BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G59060.2 Length=1879 Score E Sequences producing significant alignments: (Bits) Value Ahg938917 jgi|Araly1|938917|scaffold_503108.1 1999 0.0 > Ahg938917 jgi|Araly1|938917|scaffold_503108.1 Length=1360 Score = 1999 bits (1082), Expect = 0.0 Identities = 1276/1367 (93%), Gaps = 23/1367 (2%) Strand=Plus/Plus Query 326 GATCTGACATGGAACAAGTGTTTGCTGATTGGAATTTTGAAGATAATTTTCACATGTCCA 385 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 13 GATCTGACATGGAACAAGTGTTTGCTGATTGGAATTTTGAAGATAATTTTCACATGTCCA 72 Query 386 CTAATAAAAGATCAATCAGACCAGAAGATGAATTAGTGGAGCTATTGTGGAGAGATGGTC 445 |||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||| Sbjct 73 CTAATAAAAGATCAATCAGACCAGAAGATGAACTAGTGGAGCTACTGTGGAGAGATGGTA 132 Query 446 AAGTGGTTTTACAAAGCCAAGCTCGTAGAGAACCGTCAGTCCAAGTCCAAACCCACAAAC 505 ||||||||||||||||||||| |||||||||||||||||| || |||||||||||| Sbjct 133 AAGTGGTTTTACAAAGCCAAGGTCGTAGAGAACCGTCAGT-----TC-AAACCCACAAAC 186 Query 506 AAGAAACCCTAAGAAAACCCAACAATATTTTTCTTGACAACCAAGAAACAGTACAAAAGC 565 ||||| ||||||||||||||||||| ||||||||||| |||||||||||||||||||||| Sbjct 187 AAGAATCCCTAAGAAAACCCAACAACATTTTTCTTGATAACCAAGAAACAGTACAAAAGC 246 Query 566 CTAACTACGCTGCTCTAGATGATCAAGAAACCGTCTCCTGGATACAAT-ACCCTCCGGAT 624 || | || ||| ||| | ||||||||||||||||||||||| |||| ||||||| ||| Sbjct 247 TTAGCAACTCTGTTCTTCAGGATCAAGAAACCGTCTCCTGGAT-CAATTACCCTCCCGAT 305 Query 625 GACGTCATCGACCCTTTCGAATCCGAGTTCTCCTCTCATTTCTTCTCTTCGATCGATCAC 684 |||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 306 GACGTCATGGACCCTTTTGAATCCGAGTTCTCCTCTCATTTCTTCTCTTCGATCGATCAC 365 Query 685 CTCGGA-GGTCCTGAGAAGCCACGAACGATCGAAGAGACAGTTAAGCATGAGGCTCAAGC 743 || | ||||| ||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 366 GTCC-ACGGTCCAGAGAAACCACGAACGATCGAAGAGACAGTTAAGCATGAGGCTCAAGC 424 Query 744 CATGGCTCCTCCTAAGTTTAGATCCTCGGTTATAACAGTCGGACCGAGTCATTGCGGCAG 803 |||||||||||||||||| ||||||| ||||||||||||||||| || |||||||| || Sbjct 425 CATGGCTCCTCCTAAGTTGCGATCCTCTGTTATAACAGTCGGACCAAGCCATTGCGGTAG 484 Query 804 CAACCAGTCAACAAATATTCATCAGGCCACTACACTTCCGGTTTCTATGAGTGATAGAAG 863 ||||||||| || ||||||||||| | |||||||||||||| |||||||||||||||| Sbjct 485 CAACCAGTCTACCAATATTCATCAAGTGACTACACTTCCGGTATCTATGAGTGATAGAAC 544 Query 864 CAAGAACGTCGAAGAAAGACTTGACACTTCGTCAGGTGGCTCCTCCGGTTGCAGCTATGG 923 ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| || Sbjct 545 CAAGAACGTCGAAGAAAGACTTGACACTTCGTCCGGTGGCTCCTCCGGTTGCAGCTACGG 604 Query 924 AAGGAACAACAAAGAAACCGTTAGTGGAACAAGTGTAACCATTGACCGTAAAAGAAAACA 983 ||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||| Sbjct 605 AAGGAACAACAAAGAAACCGTTAGTGGAAGAAGCGTAACCATTGACCGTAAAAGAAAACA 664 Query 984 TGTTATGGATGCTGATCAAGAATCTGTGTCTCAATCAGATATAGGTTTGACCTCAACCGA 1043 ||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 665 TGTAATGGATGCTGATCAGGAATCTGTGTCTCAATCAGATATAGGTTTGACCTCAACCGA 724 Query 1044 TGATCAAACCATGGGTAACAAATCGAGCCAACGGTCAGGATCTACTCGAAGAAGCCGTGC 1103 ||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 725 TGATCAAGCCATGGGTAACAAATCGAGCCAGCGGTCAGGATCTACTCGAAGAAGCCGTGC 784 Query 1104 AGCTGAAGTTCATAATCTCTCAGAAAGGAGGAGGAGAGATCGGATCAATGAAAGAATGAA 1163 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 785 AGCTGAAGTTCATAATCTCTCAGAAAGGAGGAGGAGAGACCGGATCAATGAAAGAATGAA 844 Query 1164 AGCTCTTCAAGAACTCATACCTCACTGCAGCA-GAACAGATAAAGCTTCGATATTGGATG 1222 |||||||||||||||||||||||||||||||| || |||||||||||||||||||||||| Sbjct 845 AGCTCTTCAAGAACTCATACCTCACTGCAGCAAGA-CAGATAAAGCTTCGATATTGGATG 903 Query 1223 AAGCAATTGATTACTTAAAATCACTTCAAATGCAACTCCAAGTGATGTGGATGGGAAGTG 1282 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 904 AAGCAATTGATTACTTGAAATCACTTCAAATGCAACTCCAAGTGATGTGGATGGGAAGTG 963 Query 1283 GAATGGCGGCGGCGGCAGCAGCAGCAGCAAGTCCGATGATGTTTCCCGGGGTACAATCAT 1342 |||||||||| ||||| ||||||||| | | ||||||||||||||| || |||||||||| Sbjct 964 GAATGGCGGCAGCGGCTGCAGCAGCAACTACTCCGATGATGTTTCCTGGCGTACAATCAT 1023 Query 1343 CTCCATACATTAATCAGATGGCTATGCAAAGTCAGATGCAATTGTCTCAATTCCCGGTTA 1402 |||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||| Sbjct 1024 CTCCATACATTAATCAGATGGCTATGCAGAGTCAGATGCAATTGCCTCAATTCCCGGTTA 1083 Query 1403 TGAACCGGTCCGCTCCGCAGAACCATCCCGGTTTAGTATGTCAAAACCCGGTACAGTTGC 1462 |||||||||||||||| ||||| |||||||||||||||| ||||||||||||||||| | Sbjct 1084 TGAACCGGTCCGCTCCACAGAATAATCCCGGTTTAGTATGCCAAAACCCGGTACAGTTTC 1143 Query 1463 AGCTCCAAGCACAGAACCAAATCTTATCGGAGCAGCTCGCTAGGTACATGGGCGGGATTC 1522 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 1144 AGCTCCAAGCACATAACCAAATCTTATCGGAGCAGCTCGCTAGGTACATGGGCGGGTTTC 1203 Query 1523 CCCAGATGCCGCCGGCGG-GAAATCAGATGCAGACCGTGCAACAACAACCAGCGGACATG 1581 |||||||||||||||||| ||| |||| || | |||||||| | | ||| ||||| Sbjct 1204 CCCAGATGCCGCCGGCGGCGAA-TCAG--GC---C-GTGCAACAGC--C-AGCAGACATA 1253 Query 1582 TTGGGATTTGGATCTCCGGCGGGACCGCAAAGTCAACTGTCGGCACCGGCGACCACCGAC 1641 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1254 TTGGGATTTGGATCTCCGGCGGGACCGCAAAGTCAACTGTCGGCACCGGCGACCACCGAC 1313 Query 1642 AGTCTTCATATGGGTAAAATAGGCTGACTTGGCATATAGTTTTCCTC 1688 ||||||||||| |||||||||| ||||| ||||||||| |||||||| Sbjct 1314 AGTCTTCATATTGGTAAAATAGCCTGACGTGGCATATAATTTTCCTC 1360 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 70581223985 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5