BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G59090.2 Length=1537 Score E Sequences producing significant alignments: (Bits) Value Ahg486377 jgi|Araly1|486377|fgenesh2_kg.5__2369__AT3G59090.1 1868 0.0 > Ahg486377 jgi|Araly1|486377|fgenesh2_kg.5__2369__AT3G59090.1 Length=1585 Score = 1868 bits (1011), Expect = 0.0 Identities = 1155/1220 (95%), Gaps = 28/1220 (2%) Strand=Plus/Plus Query 1 GTCTCTCAGACCAGACCCAACCCATCTCCTACAACCATCTGTCTCGGTGGTGTTCTTTGA 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 GTCTCTCAGACCAGACCCAACCCATCTCCTACAACCATCTGTCTCGGTGGTGTTCTTTGA 60 Query 61 TCCTCTCTCTCTTACAAACCTAAAATCTAGGCATTCGATCTCTTGGGGAGGATCGAGAAG 120 | | |||||||||||||||||||||||| ||||||||||||| | | || || ||| Sbjct 61 T-C-CTCTCTCTTACAAACCTAAAATCTCGGCATTCGATCTC-T---G-GG---GA-AAG 109 Query 121 AAAAGAGCGGATTCACGATGAAGATC---TTAGCGACTCTTTTCGAATCAACCAAGGATA 177 ||| ||||||||||||| |||| |||||||| |||||||||||||||||||||| Sbjct 110 ---AGA--GGATTCACGATGACGATCTTATTAGCGACGCTTTTCGAATCAACCAAGGATA 164 Query 178 AATGCTATGCTCCTAGCTTCATCGCCGTCAATCTCTGTTTGGCTTTTATCGATGCCGCTC 237 |||||||||| || |||||||||||||||||||||| | ||||||||||||||||||||| Sbjct 165 AATGCTATGCCCCAAGCTTCATCGCCGTCAATCTCTCTCTGGCTTTTATCGATGCCGCTC 224 Query 238 TTGCTTTCATCGCATTCCTTCAGTTATCTCGATTTCACAGGCGGAATAAACAAGTTGGAT 297 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 225 TTGCTTTCATCGCATTCCTTCAGTTATCTCGATTTCACAGGCGGAATAAACAAGTTGGAT 284 Query 298 GGACTCGGCAAAAAGTACTTCATCTTATGATTGCTTCTTCAAACACTGGTTCTGTTATTT 357 ||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||| Sbjct 285 GGACTCGGCAAAAAGTACTTCATCTTATGATTGGTTCTTCAAACACTGGTTCTGTCGTTT 344 Query 358 ATTTCGTGGCTGCGGTTATAGCGACTTGCACAAGGTGGCATCATTGGTCCAACGCATTAG 417 |||| || |||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 345 ATTTTGTTGCTGCGATTATAGCGACTTGCACAAGGTGGCATCATTGGTCCAACGCATTAG 404 Query 418 GTTTTCTACTCATGGCCTTTCCCAAAATTCTGTTTCTGGCAACTTTTCTCCTGCTTCTCT 477 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 405 GTTTTCTACTCATGGCCTTTCCCAAAATTCTGTTTCTGGCAACTTTTCTCCTGCTTCTCT 464 Query 478 CTTTCTGGGTAGATGTTTGCCATCAGGGAAATGGAGAGGAGgatgatgatgatgatgaAG 537 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 465 CTTTCTGGGTAGATGTTTGCCATCAGGGAAATGGAGAGGAGGATGATGATGATGATGAAG 524 Query 538 AAAATAGCATCCAACAAGTGTTGCTTGAAAAAAGCAAGAGCAAGCCAGGTTCTTCGAATG 597 ||||||||||||||||||| ||||||||||||||||| | ||||||||||||||| |||| Sbjct 525 AAAATAGCATCCAACAAGTTTTGCTTGAAAAAAGCAACACCAAGCCAGGTTCTTCAAATG 584 Query 598 CAAGTGATCGTAGAAAGTGTTGCTCTTTCCATGGTATTCATGTTGGAACCCGGCAGAAGT 657 | |||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||| Sbjct 585 CTAGTGATCGTAGAAAGTGTTGCTCTTTCCATGGGATTCATGTTGGAACCCGTCAGAAGT 644 Query 658 TTGTTGTTGCGGCAATTATTCTTGTGTTCATCTTAATGATATCATTTGCAATCCTTATCT 717 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 645 TTGTTGTTGCGGTAATTATTCTTGTGTTCATCTTAATGATATCATTTGCAATCCTTATCT 704 Query 718 GGATCGCTTCCGGAAAGAATCCTATGAATTCTTCATTATTGGCTGAGGTGTATGTCGATA 777 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 705 GGATCGCTTCCGGAAAGAATCCTATGAATTCTTCATTATTGGCTGAGGTGTATGTCGATA 764 Query 778 TTTTTGCTGCAATAATCCTAATCACTGGAGGAGGAATCTGCTTCTATGGCCTGCGTCTGC 837 ||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||| Sbjct 765 TTTTTGCTGCAATAATCCTAATCACGGGAGGAGGAATATGCTTCTATGGCCTGCGTCTGC 824 Query 838 TCTTTAATCTAAGAAAGGTGCGGTCTGAACAAGTTTCATCAGAGATGCGAAAGGTATCGG 897 |||||||||||||||||||||||||||||||||||||| |||||||||| |||||||| | Sbjct 825 TCTTTAATCTAAGAAAGGTGCGGTCTGAACAAGTTTCAGCAGAGATGCGTAAGGTATCTG 884 Query 898 GTCTAGCAGGAGTCTCAGTTGTTTGCTTCACTGTTAGCTCTTTAATCGCTCTTCTCACAC 957 || ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 885 GTTTAGCAGGCGTCTCAGTTGTTTGCTTCACTGTTAGCTCTTTAATCGCTCTTCTCACAC 944 Query 958 ACATTCCACTCTTTTATCATTGGAACCCAAGCAAATTACACGGCATCAAAGCATTGGTTC 1017 ||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 945 ACATTCCACTCTTCTATCATTGGAACCCAAGCAAATTACACGGCGTCAAAGCATTGGTTC 1004 Query 1018 TTCTGATCATATACTATTTCATAGGTTCCACCGTCCCATTGGCTTTCGTTTTATGGGTTT 1077 ||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||| Sbjct 1005 TTCTGATCATATACTATTTCATAGGTTCCACTGTACCATTGGCTTTCGTTTTATGGGTTT 1064 Query 1078 TGCGGGAGTTACCCCCTCAAAACATTGTGAGTAGGCAAGAAGACACCAGAAGGATTACTT 1137 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 1065 TGCGGGAGTTACCCCCTCAAAACATTGTGAGTAGACAAGAAGACACCAGAAGGATTACTT 1124 Query 1138 ATGTCAACTATGAAACTGTTCCAAGGCAACCTCAAGGTCCTCAACAAGACTGGGCCTCCG 1197 |||||||||||||||||||| |||||||||||| | | || |||||||||||| Sbjct 1125 ATGTCAACTATGAAACTGTTGCAAGGCAACCTC-----C---A-CAGGACTGGGCCTCCA 1175 Query 1198 CCACAGTGTCGAAAAATCAG 1217 | |||||||||||||||||| Sbjct 1176 CTACAGTGTCGAAAAATCAG 1195 Score = 387 bits (209), Expect = 2e-106 Identities = 283/315 (90%), Gaps = 19/315 (6%) Strand=Plus/Plus Query 1216 AGTTACCGGGAAAAAGCCTCGTGGGATTGCAGAATGGTTCTTAGGCCCAATGTGGTGTGT 1275 |||||||||||||||||||||| ||||||| |||||||| |||||||||||||||||||| Sbjct 1277 AGTTACCGGGAAAAAGCCTCGTTGGATTGCGGAATGGTTGTTAGGCCCAATGTGGTGTGT 1336 Query 1276 TGTGGTGGAGTGAATGAAAGTGGAAACAAG--CTCGTTTTCTTCTCTCTGA-GTCGCCTT 1332 |||| |||||||||||||||||| |||||| ||||||||||||||||| | |||||||| Sbjct 1337 TGTGCTGGAGTGAATGAAAGTGGTAACAAGCTCTCGTTTTCTTCTCTCT-ATGTCGCCTT 1395 Query 1333 GGAATAC-AAAAATTTGTTTATAAGATAGAAATGGAGGTTTGAATCTGAGAAAGCTGTCT 1391 |||| || |||||||||||||||||||||||| |||||||||||||| ||||||| ||| Sbjct 1396 GGAAGACAAAAAATTTGTTTATAAGATAGAAAGGGAGGTTTGAATCTAAGAAAGC--TCT 1453 Query 1392 GTAAATATTAACTTTTGATTGCAATTTATAGTTT-AG---CATCATGTGTTGGGGGGACT 1447 ||||||||||||||||||||||| ||| |||||| || ||||||||||||| ||| Sbjct 1454 GTAAATATTAACTTTTGATTGCAGTTTTTAGTTTTAGGTGCATCATGTGTTGGA---ACT 1510 Query 1448 TGTGGATGG-ATATAAAATGTGTTCCAAGGAAGA---TATAA-TTTTGTCTTCCTTTCTA 1502 ||||||||| |||||||||||||| |||||||| ||||| ||||||||||||||||| Sbjct 1511 TGTGGATGGGATATAAAATGTGTTGTAAGGAAGAAGATATAAATTTTGTCTTCCTTTCTA 1570 Query 1503 AACAGCGTCGTTTAA 1517 ||||||||||||||| Sbjct 1571 AACAGCGTCGTTTAA 1585 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 57554360195 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5