BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G59220.1 Length=1057 Score E Sequences producing significant alignments: (Bits) Value Ahg486390 jgi|Araly1|486390|fgenesh2_kg.5__2382__AT3G59220.1 1487 0.0 Ahg324401 jgi|Araly1|324401|fgenesh1_pm.C_scaffold_5001945 730 0.0 > Ahg486390 jgi|Araly1|486390|fgenesh2_kg.5__2382__AT3G59220.1 Length=991 Score = 1487 bits (805), Expect = 0.0 Identities = 919/975 (94%), Gaps = 4/975 (0%) Strand=Plus/Plus Query 84 AACAATAGTGTACCAAGAATTGTAATCAAGAAAGTTCTAGCAAAGCTTGAGAAGGAAGGT 143 |||||||| ||||||||| ||||||||||||||||||||||||||||| ||||||||||| Sbjct 19 AACAATAGCGTACCAAGACTTGTAATCAAGAAAGTTCTAGCAAAGCTTCAGAAGGAAGGT 78 Query 144 GAAGGAGCTGTCGTTAGAAATGGCATCACAAAGATTGACCAGAAGTTATTGGACCCGTTC 203 ||||| |||||||||||||| ||||||||| ||||||||||||||||||||||||||||| Sbjct 79 GAAGGCGCTGTCGTTAGAAACGGCATCACAGAGATTGACCAGAAGTTATTGGACCCGTTC 138 Query 204 GTGTTGCTAGTTGAATTTTCCTTTTCACTCTCAGCTGGATTCCCAGATCATCCTCACAGA 263 ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 139 GTGTTGCTAGTTGAATTTTCCCTTTCACTCTCAGCTGGATTCCCAGATCATCCTCACAGA 198 Query 264 GGTTTTGAAAGTGTTACATACATGCTACAGGGAGGTATCATTCACAAAGATCCTAAAGGT 323 ||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||| Sbjct 199 GGTTTTGAAAGTGTTACATACATGCTACAAGGAGGTATCATTCACAAAGATCCCAAAGGT 258 Query 324 CATAAAGGTACAATTCAAGCCGGAGATGTTCAGTGGATGACAGCAGGAAGAGGAATCATT 383 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 259 CATAAAGGTACAATCCAAGCCGGAGATGTTCAGTGGATGACAGCAGGAAGAGGAATCATT 318 Query 384 CATTCCGAATTTCCGGAAGAAGAAGTAAACAATGGTTTACAGCTTTGGATCAATCTCCCT 443 ||||| |||||||||||||||||||| |||| |||||||||||||||||||||||||||| Sbjct 319 CATTCTGAATTTCCGGAAGAAGAAGTCAACACTGGTTTACAGCTTTGGATCAATCTCCCT 378 Query 444 TCCACTGAAAAAATGACTGAACCAAAATATAAGGAACTATCGAGTTTAGACATTCCTCGA 503 |||||||| ||||||| ||||||||||||||| ||||| || |||| | |||| || ||| Sbjct 379 TCCACTGACAAAATGATTGAACCAAAATATAAAGAACTCTCAAGTTCAAACATCCCGCGA 438 Query 504 GCAGAAGAAAACGGAGTTGAGGTCAAAGTCATAGCCGGAGATTCAATGGGAATCAAATCT 563 ||||||||||| ||||| || ||||||||| ||||||||||||||||||||||||||||| Sbjct 439 GCAGAAGAAAAAGGAGTAGAAGTCAAAGTCCTAGCCGGAGATTCAATGGGAATCAAATCT 498 Query 564 CCAGTCTACACAAGAACACCAACAATGTTCCTTGACTTTACCCTCAAGCCAGGATCTCAA 623 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 499 CCAGTCTACACAAGAACACCAACAATGTTCCTTGACTTTACCCTCAAGCCAGGATCTCAA 558 Query 624 ACCCACCAAACCGTTCCAGAATCATGGACCGCTTTCGCTTACATTATAGAAGGCGATGAA 683 |||||||| |||||||||||||| ||||||||||| || |||||||||||||||||||| Sbjct 559 ACCCACCAGACCGTTCCAGAATCTTGGACCGCTTTTGCCTACATTATAGAAGGCGATGAG 618 Query 684 GGTGTTTTCGGTTCCTTGAACTCTTCCGCAATATCGGCCCACCATGTTGTTGTGTTTGGG 743 ||||| |||||||| |||||||||||||| ||||| || || ||||||||||||||||| Sbjct 619 GGTGTGTTCGGTTCGTTGAACTCTTCCGCTATATCCGCGCATCATGTTGTTGTGTTTGGA 678 Query 744 CCAGGGGATTTAGTTAGCGTGTGGAACAAGTCAACTTCGAGGTCATTGAGGTTTTTGTTG 803 |||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||| Sbjct 679 CCAGGGGATTTAGTTAGCGTGTGGAACAAGTCAACTTCGAGGTCGTTGAGGTTTCTGTTG 738 Query 804 ATTGCAGGGGAACCTATCGGCGAGCCTGTGGTTCAGTGTGGTCCCTTTGTGATGAATTCA 863 |||||||||||||| ||||| ||||||||||||||||||||||| |||||||||||||| Sbjct 739 ATTGCAGGGGAACCGATCGGTGAGCCTGTGGTTCAGTGTGGTCCGTTTGTGATGAATTCG 798 Query 864 CAGGCGGAGATCGATATGGCTTTTGATGACTATCAGAATGCTAAGAACGGGTTTGAAATG 923 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 799 CAGGCGGAGATCGATATGGCTTTTGATGACTATCAGAATGCTAAGAACGGGTTTGAAATG 858 Query 924 GCCAAGTGTTAGAGGTTACAGTGAAAAGAGTTTGTAAACAAAAACCAT-TCTGATTATTT 982 |||||||||||||||| ||||||||||||||||||||||||||||||| | | || ||| Sbjct 859 GCCAAGTGTTAGAGGTCACAGTGAAAAGAGTTTGTAAACAAAAACCATATAGG-TTCTTT 917 Query 983 TGGATTTTGTTGTCTTTATTCCACATTCAAGATGAGATCAATGTTAGGGGCTATAATATC 1042 ||| ||||||| |||||||| ||||||||||||||||||||||||||||||||||||| | Sbjct 918 TGGGTTTTGTTTTCTTTATTTCACATTCAAGATGAGATCAATGTTAGGGGCTATAATAAC 977 Query 1043 AA-CCATCTCTTTCA 1056 || || ||||||||| Sbjct 978 AATCC-TCTCTTTCA 991 > Ahg324401 jgi|Araly1|324401|fgenesh1_pm.C_scaffold_5001945 Length=858 Score = 730 bits (395), Expect = 0.0 Identities = 693/834 (83%), Gaps = 32/834 (4%) Strand=Plus/Plus Query 130 TTGAGAAGGAAGGTGAAGGAGCTGTCGTTAGA-AATGGCATCACAAAGATTGACC-AGAA 187 ||||||| |||||||| || ||||| |||||| | |||||||| |||| ||||| || | Sbjct 41 TTGAGAATGAAGGTGATGGTGCTGTTGTTAGACGA-GGCATCACCAAGAGTGACCAAG-A 98 Query 188 GTTATTGGACCCGTTCGTGTTGCTAGTTGAATTTTCCTTTTCA-CTCTCAGCTGGATTCC 246 ||| |||||||||||||| | |||||||||||||||| ||||| ||| | | ||||||| Sbjct 99 GTTGTTGGACCCGTTCGTCTCGCTAGTTGAATTTTCCGTTTCACCTC-CTGGTGGATTCA 157 Query 247 CAGATCATCCTCACAGAGGTTTTGAAAGTGTTACATACATGCTACAGGGAGGTATCATTC 306 |||||||||||||||||||||||||||||| ||||||||| | || ||||| ||||||| Sbjct 158 AAGATCATCCTCACAGAGGTTTTGAAAGTGTCACATACATGTTGCAAGGAGGCATCATTC 217 Query 307 ACAAAGATC-CTAAAGGTCATAAAGGTACAATTCAAGCCGGAGATGTTCAGTGGATGACA 365 || |||| | ||| ||| ||||||||||||| || | ||||||||||||||||||||| Sbjct 218 ACCAAGA-CTTTAATGGTAATAAAGGTACAATCCATGAAGGAGATGTTCAGTGGATGACA 276 Query 366 GCAGGAAGAGGAATCATTCATTCCGAATTTCCGGAAGAAGAAGTAAACAATGGTTTACAG 425 ||||||||||||||||||||||| ||| | || |||||| |||| ||||| || |||||| Sbjct 277 GCAGGAAGAGGAATCATTCATTCTGAAATGCCTGAAGAACAAGTCAACAAGGGGTTACAG 336 Query 426 CTTTGGATCAATCTCCCTTCCACTGAAAAAATGACTGAA-CC-AAAA-TATAAGGA-ACT 481 ||||||||||| |||||||||| ||| ||||||| || | || |||| | || | | | | Sbjct 337 CTTTGGATCAACCTCCCTTCCAGTGACAAAATGA-TGGAGCCTAAAAATCTA-G-ATA-T 392 Query 482 ATCGAGTTTAGACATTCCTCGAGCAGAAGAAAACGGAGTTGAGGTCAAAGTCATAGCCGG 541 ||||||| ||| |||||| ||||||| ||| | ||||| ||||||||||||||||| || Sbjct 393 GTCGAGTTCAGAGATTCCTAGAGCAGATGAATATGGAGTAGAGGTCAAAGTCATAGCTGG 452 Query 542 AGATTCAATGGGAATCAAATCTCCAGTCTACACAAGAACACCAA-CAATGTTCCTTGACT 600 ||| ||||||||| |||||||||| ||||||||| ||||||| || ||||||| |||| Sbjct 453 AGAGTCAATGGGAGTCAAATCTCCTTTCTACACAAAAACACCAGTCA-TGTTCCTGGACT 511 Query 601 TTACCCTCAAGCCAGGA-TCTCAAACCCACCAAACCGTTCCAGAATCATGGACCGC-TTT 658 |||| ||| | ||| || | |||||||||||| ||||||||||| ||||||||||| ||| Sbjct 512 TTACTCTCGATCCAAGAGT-TCAAACCCACCAGACCGTTCCAGAGTCATGGACCGCCTTT 570 Query 659 CGCTTACATTATAGAAGGCGATGAAGGTGT-TTTCGGTTCCTTGAACTCTTCCGCAATAT 717 || ||||||||||||||||||||||| || ||| | | ||| | |||||||| || || Sbjct 571 -GCCTACATTATAGAAGGCGATGAAGGCGTGTTTAGCT-CCTCGGACTCTTCCACAGTA- 627 Query 718 CG-GCCCACCATGTTGTTGTGTTTGGGCCAGGGGATTTAGTTAGCGTGTGGAACAAGTCA 776 | || || ||||||| |||||||| ||||||| ||||||||||||||||| |||| Sbjct 628 CAAGCACATAATGTTGTGGTGTTTGGAACAGGGGACGAAGTTAGCGTGTGGAACACGTCA 687 Query 777 A-CTTCGAGGTCATTGAGGTTTTTGTTGATTGCAGGGGAACCTATCGGCGAGCCTGTGGT 835 | || | || || |||||||| |||||||||||||||||||| || |||||||||||||| Sbjct 688 AGCT-CTAGATCGTTGAGGTTCTTGTTGATTGCAGGGGAACCGATTGGCGAGCCTGTGGT 746 Query 836 TCAGTGTGGTCCCTTTGTGATGAATTCACAGGCGGAGATCGATATGGCTTTTGATG-ACT 894 | || |||| || ||||||||||| ||||| || ||||| |||||| | || | | ||| Sbjct 747 TGAGCGTGGGCCATTTGTGATGAACTCACAAGCTGAGATTGATATGACGATT-AGGGACT 805 Query 895 ATCAG-AATGCTAAGAACGGGTTTGAAATGGCCAAGTGTTAGAGGTTACAGTGA 947 ||| | ||||| |||| || ||||||||||||||| || ||||| | ||||| Sbjct 806 ATC-GTAATGCCCAGAATGGCTTTGAAATGGCCAAGCATTGGAGGTCAGAGTGA 858 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 39342850344 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5