BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G59400.1 Length=994 Score E Sequences producing significant alignments: (Bits) Value Ahg486407 jgi|Araly1|486407|fgenesh2_kg.5__2399__AT3G59400.1 1515 0.0 > Ahg486407 jgi|Araly1|486407|fgenesh2_kg.5__2399__AT3G59400.1 Length=989 Score = 1515 bits (820), Expect = 0.0 Identities = 945/1002 (94%), Gaps = 21/1002 (2%) Strand=Plus/Plus Query 1 GACGTGActcttctctctcttcct-ctccatcaatggcgaccacaaactctctccaccac 59 |||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||| Sbjct 1 GACGTGACTCTTCTCTCTCTTCTTCCTCCATCAATGGCGACCACAAACTCTCTCCACCAC 60 Query 60 caccaccactcctctccttcttacacacaccaccGCAACAATCTCCATTGCCAATCTCAC 119 |||||||||| | || |||||||||||||||||||| |||||||||||| |||||||||| Sbjct 61 CACCACCACT-C-CT-CTTCTTACACACACCACCGCCACAATCTCCATTCCCAATCTCAC 117 Query 120 TTCGGACCAACTTCTCTTTCCCTCAAACAACCCACTTCCGCCGCAACATTCTCACTAATC 179 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 118 TTCGGACCAACTTCTCTTTCCCTCAAACAACCCACTTCCGCCGCAACATTCTCACTTATC 177 Query 180 TGCTCTGCTTC-T--TCCACCTCCTCCTCCACCACCGCCG-TATCT--GCCGTTTCAACC 233 ||||||||||| | ||| ||||||||||| || |||||| | ||| |||||||||||| Sbjct 178 TGCTCTGCTTCTTCCTCCTCCTCCTCCTCCTCCTCCGCCGCTGTCTCCGCCGTTTCAACC 237 Query 234 ACAAACGCCTCCGCCACAACTGCCGAAACCGCGACCATATTCGACGTTCTGGAGAACCAT 293 |||||||||||||| |||||||||||||||||||| | |||||||||| |||||||||| Sbjct 238 ACAAACGCCTCCGCTACAACTGCCGAAACCGCGACAAAATTCGACGTTTTGGAGAACCAC 297 Query 294 CTCGTCAATCAAAACTTCAGACAAGCCGACGAGGAGACACGGAGATTACTCATTCAGATA 353 |||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||| Sbjct 298 CTCGTCAATCAAAACTTCCGACAAGCCGACGAGGAGACAAGGAGATTACTCATTCAGATA 357 Query 354 TCCGGAGAAGCCGCCGTGAAACGTGGCTACGTTTTCTTCTCCGAGGTGAAAACAATCTCC 413 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 358 GCCGGAGAAGCCGCCGTGAAACGTGGCTACGTTTTCTTCTCCGAGGTGAAAACAATCTCC 417 Query 414 CCCGAAGATCTTCAAGCTATCGACAATCTATGGATTAAACACAGTGATGGTAGATTCGGA 473 |||||||||||||| | |||||||||||||||| ||||||||| ||||| ||||||||| Sbjct 418 ACCGAAGATCTTCAAACCATCGACAATCTATGGACTAAACACAGCGATGGGAGATTCGGA 477 Query 474 TACAGCGTGCAACGCAAAATCTGGTTAAAAGTGAAGAAAGATTTCACAAGATTCTTCGTT 533 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 478 TACAGCGTGCAACGCAAAATCTGGTTAAAAGTGAAGAAAGATTTCACAAGATTCTTCGTT 537 Query 534 AAAGTTGAGTGGATGAAGCTTCTTGACACAGAGGTTGTTCAATACAATTACAGAGCGTTT 593 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 538 AAAGTTGAGTGGATGAAGCTTCTTGATACAGAGGTTGTTCAATACAATTACAGAGCGTTT 597 Query 594 CCTGACGAATTCAAGTGGGAGCTTAACGATGAAACGCCTTTAGGACACTTACCGCTCACA 653 ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 598 CCTGACGAATTCAAGTGGGAGCTTAACAATGAAACGCCTTTAGGACACTTACCGCTCACA 657 Query 654 AACGCCTTGAGAGGAACGCAGCTTCTGAAATGCGTTTTAAGCCATCCTGCGTTTGCGACA 713 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 658 AACGCGTTGAGAGGAACGCAGCTTCTGAAATGCGTTTTAAGCCATCCTGCGTTTGCGACA 717 Query 714 GCTGATGATAACAGTGGAGAAACAGAAGACGAGCTTAACAGAGGTGTTGCGGTGGCTAAG 773 ||||||||||||||||||||||||||||| ||||| |||||||||||||| ||||||||| Sbjct 718 GCTGATGATAACAGTGGAGAAACAGAAGAAGAGCTAAACAGAGGTGTTGCTGTGGCTAAG 777 Query 774 GAACAGGCAGGAGTAGGAGCAGACAAAAGAGTGTTTAAAACAAATTACAGCTTCTGATGT 833 |||||| |||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 778 GAACAGACAGGAGTAGGAGCAGACAAAAGAGTGTTTAAAACAAATTACAGCTTCTGACGT 837 Query 834 CTTTCTCCTTCttttttttttttttttAATATTGATTTTCTGATATTGTGAAAGTATAAA 893 |||||||||| ||||| |||| || ||| || | ||||||||||||||||||||| Sbjct 838 CTTTCTCCTT-TTTTTATTTTATT---AAT-TT--T---CTGATATTGTGAAAGTATAAA 887 Query 894 CAAATCTCTGTAATCATATCATTAATTAAATCGGATTTCTCTTCAATGTCAGTTCCA-TT 952 ||||||||||||||||||||||||||||||| || ||||||||||||||||||| || || Sbjct 888 CAAATCTCTGTAATCATATCATTAATTAAATTGGGTTTCTCTTCAATGTCAGTTTCAATT 947 Query 953 GTGATTATGGATGTATGAACAAAGCCAGATCATTAGTTAATG 994 |||||||||||||||||||||||| ||||||||||||||||| Sbjct 948 GTGATTATGGATGTATGAACAAAGTCAGATCATTAGTTAATG 989 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 36941106573 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5