BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G59780.1 Length=2504 Score E Sequences producing significant alignments: (Bits) Value Ahg898931 jgi|Araly1|898931|Al_scaffold_0005_2897 1363 0.0 > Ahg898931 jgi|Araly1|898931|Al_scaffold_0005_2897 Length=2073 Score = 1363 bits (738), Expect = 0.0 Identities = 816/854 (96%), Gaps = 3/854 (0%) Strand=Plus/Plus Query 915 TCACTTCCTGATGCGAAAGCTAGCGTTGATGACTTTTCTTCTGGGGTCAAGGAGTCCTTC 974 |||||||||||| | ||||||||| |||||||||||||||||||| |||||||||||||| Sbjct 580 TCACTTCCTGATCCTAAAGCTAGCTTTGATGACTTTTCTTCTGGGCTCAAGGAGTCCTTC 639 Query 975 AGCTCTTCACTTAACCAAGGAGAAAATGCTGTAAAGAACACTTTGGAGTCCTTCTCCTCG 1034 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 640 AGCTCTTCACTTAACCAAGGAGAAAATGCTGTAAAGAACACTTTGGAGTCCTTCTCCTCT 699 Query 1035 TCTGTGACATCCATTACAAAGAATGCTTCTGAAGTTGTAGATAG-TGCAGTTAACAGAGC 1093 ||||||||||| |||||||||||||||||||||||||||||| | |||| |||||||||| Sbjct 700 TCTGTGACATCTATTACAAAGAATGCTTCTGAAGTTGTAGAT-GATGCATTTAACAGAGC 758 Query 1094 GTTTTCTACGCTAGACCAAACGGGAGATGTAGCTGGAGACAAGTTTTCGAGTTTTTCTAC 1153 ||||||| || | |||||||| |||||| ||||||||||||||||||| ||||||||||| Sbjct 759 GTTTTCTGCGGTCGACCAAACAGGAGATATAGCTGGAGACAAGTTTTCAAGTTTTTCTAC 818 Query 1154 TGGCTTGAAGGAAGCTTCAAACAGAGCAGCTGTTATTGCCATTGATCTGCTGAGGCAATC 1213 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 819 TGGCTTGAAGGAAGCTTCAAACAGAGCAGCTGTTATTGCCATTGATCTGTTGAGGCAATC 878 Query 1214 AGTTAGTCTTGGAGAGAGATCTGTAACAAATGGAGTTTCTTTTGTTGTGTACTCTTATGG 1273 ||||||| ||| ||| || ||||| ||||||||||||||||||||||| ||||||||||| Sbjct 879 AGTTAGTATTGCAGAAAGTTCTGTTACAAATGGAGTTTCTTTTGTTGTTTACTCTTATGG 938 Query 1274 ATCAGCAAAAGAATTACTTCCTCCAGATGTAAAGAGTGCCCTTAACTCGTCAGAAGATGT 1333 ||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 939 GTCAGCAAAAGATTTACTTCCTCCAGATGTTAAGAGTGCCCTTAACTCGTCAGAAGATGT 998 Query 1334 TGCTCTAAAAGTATTGAGTCCCGTGGGAGCTGTATTGCAGCAGGTATCTGTTGCCATTGG 1393 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 999 TGCTCTAAAAGTATTGAGTCCCGTGGGAGCTGTGTTGCAGCAGGTATCTGTTGCCATTGG 1058 Query 1394 AGGTTTGGAGAGAAATATCGGTTTGGATCCAGATGACCCAATCCTTCACCTTTTTCTCTT 1453 |||||||||||||||| |||||||||||||||||||||||||| ||||||||||||| || Sbjct 1059 AGGTTTGGAGAGAAATTTCGGTTTGGATCCAGATGACCCAATCATTCACCTTTTTCTATT 1118 Query 1454 CGTAGGCACCACAGGAACCTTTTGGGTTCTATATCGGGTTTGGACATATGGTGGATATGC 1513 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1119 CGTAGGCACCACAGGAACCTTTTGGGTTCTATATCGGGTTTGGACATATGGTGGATATGC 1178 Query 1514 TGGAGATTTGTCTCCCAAGTCAACTCTGGACCTTTTAAAATCAAGAGACAAGTCAGTGCT 1573 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 1179 TGGAGATTTGTCTCCCAAGTCAACTCTGGACCTTTTAAAATCAAGAGAAAAGTCAGTGCT 1238 Query 1574 CATAGATGTCAGGCCTGAAGCCTTGAGAGAGAAAGATGGAATACCTGATCTGCGGAGATC 1633 |||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 1239 CATAGACGTCAGGCCTGAAGCCTTGAGAGAGAAAGATGGAATCCCTGATCTGCGGAGATC 1298 Query 1634 AGCTCGATTTCGATATTCTAGCGTGACACTGCCTGAGGTTGACGGTGATGTCAAACGGCT 1693 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 1299 AGCTCGATTTCGATATTCTAGCGTGACACTGCCTGAGGTTGACGGTGCTGTCAAACGGCT 1358 Query 1694 ACTGAAAGGTGGAAGTGAAGTAGATGATATCTTGACAGCAGTAATCATCAAGAACTTGAA 1753 |||||||||||||||||| || |||||||| ||||||||||||||||||||||||||||| Sbjct 1359 ACTGAAAGGTGGAAGTGAGGTTGATGATATTTTGACAGCAGTAATCATCAAGAACTTGAA 1418 Query 1754 AATAGTTCAG-GAC 1766 || ||||||| ||| Sbjct 1419 AACAGTTCAGAGAC 1432 Score = 562 bits (304), Expect = 4e-159 Identities = 385/423 (91%), Gaps = 9/423 (2%) Strand=Plus/Plus Query 324 ATGTTTCCCCTGTGCTCGGCCACAAGCTGCCGTTACCATTCTCAGATTTTATTTCCTGGC 383 ||||||||||||||||| ||| ||||||||| ||||||||||||||||||||||||| || Sbjct 1 ATGTTTCCCCTGTGCTCAGCCGCAAGCTGCCATTACCATTCTCAGATTTTATTTCCTAGC 60 Query 384 AATTGGCGAGGCTGTTCTTCCTTCAGGAGAGAGTTGATTCACAGATACAGTTCAGGTGAC 443 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 61 AATTGGCGAGGCTGTTCTTCCTTCAGGAGAGAGTTGATTCACAGATACAGTTCTGGTGAC 120 Query 444 AATGCCTTCTTTGGTATCTCTAATGGAACACGCCTGCAGAAGAGTTTCGTACCTCAAGCC 503 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 121 AATGCCTTCTTTGGTATCTCTAATGGAACACGCCTGCAGAAGAGTTTCTTACCTCAAGCC 180 Query 504 ACTGGGAGTTTCTTGACCGGTACTATCGAAAAAACAGAACAACCAGTATCAACATTCGGA 563 |||||||||||||| |||||||||||||||||| ||| |||||||||||||||||| || Sbjct 181 ACTGGGAGTTTCTTCACCGGTACTATCGAAAAAGTAGAGCAACCAGTATCAACATTCAGA 240 Query 564 AGTTTGTGCCAGAATGAGTTGGACAGAATAAACTACATGGTTTATAACATGAGTGAAGCT 623 |||||||||||||||||||||||||||||| || | ||||| || ||||||||||| Sbjct 241 AGTTTGTGCCAGAATGAGTTGGACAGAATAGAC-----G-TTTATGACTTGAGTGAAGCT 294 Query 624 TTTGTAGCGAGTGATGAGGGACTGACATATGTAGAAAATGGAGAAGATGTGTTCCCTGTT 683 |||||||| |||||| ||||||| |||||||||| |||||||||||| ||||||||| Sbjct 295 ATTGTAGCGGGTGATGGGGGACTGGCATATGTAGA---TGGAGAAGATGTTTTCCCTGTT 351 Query 684 GAAGCTGTTGCAGCAGATGTTTCTCCTGTTGAAGCTGTTGTACCAGATGTTTCCCCCATT 743 || |||| || |||||||||||| |||||||| |||| |||| |||||||||| || || Sbjct 352 GACGCTGCTGTAGCAGATGTTTCCCCTGTTGACGCTGCTGTAGCAGATGTTTCTCCTGTT 411 Query 744 GAA 746 ||| Sbjct 412 GAA 414 Score = 532 bits (288), Expect = 3e-150 Identities = 326/345 (94%), Gaps = 0/345 (0%) Strand=Plus/Plus Query 2040 GAGTGGGAGAAAACACTGCAACTCATAGCTGTCATCGGCCTTAGTCTGACTATATACCTA 2099 ||||||||||||||||||||||||||||||||| | ||||| ||||||||||||||| | Sbjct 1729 GAGTGGGAGAAAACACTGCAACTCATAGCTGTCGTTGGCCTCGGTCTGACTATATACCAA 1788 Query 2100 CGACTTTCTTCATATGATGACTCCGAAGACTTCAAACAAGACGTCAGGCTGTTGCTTGCA 2159 ||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| Sbjct 1789 CGACTTTCTTCATATGATGACTCTGAAGACTTCAAGGAAGACGTCAGGCTGTTGCTTGCA 1848 Query 2160 CCTGTGAAACTCGGAGCTCAGGCTTTCTCGTGGGCTGCAGGAAAACTAGAAACAAATGGT 2219 ||||||| ||||||||||||||||||||| ||||||||||||||||| |||||||||||| Sbjct 1849 CCTGTGAGACTCGGAGCTCAGGCTTTCTCATGGGCTGCAGGAAAACTCGAAACAAATGGT 1908 Query 2220 GTTGGCCTCCCAACTTCGCCTTCTTCTTCAGATGTTCGAAGCCGGGTTTTGCAAGCTGCT 2279 ||||| |||||||| || ||||| |||||||||||| ||||||||||||||||||||||| Sbjct 1909 GTTGGGCTCCCAACATCACCTTCGTCTTCAGATGTTAGAAGCCGGGTTTTGCAAGCTGCT 1968 Query 2280 GCTAAGCATGAATCGAAACCCTCTGATGAAACTTCTGAAAGTCTCCAAGATGCATCATCG 2339 |||||||||||||| || |||||||||||||| ||||||||||||||||||||||||||| Sbjct 1969 GCTAAGCATGAATCTAAGCCCTCTGATGAAACATCTGAAAGTCTCCAAGATGCATCATCG 2028 Query 2340 TCACCAGAAGAAGCTTTGAACAACGTTGATGTCTCCGAAGCGTAA 2384 ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2029 TCACCAGAAGAAGCTTTGAACAACGTTGATGTCTCCGAAGCGTAA 2073 Score = 294 bits (159), Expect = 2e-78 Identities = 187/200 (94%), Gaps = 3/200 (2%) Strand=Plus/Plus Query 1846 AGAGGCCATACTTGATGCAAGGTGGGTATAGATCATGGG-TACAGGAAGGTCTTCGTGTG 1904 |||| ||||||||| ||||||| || | ||||||||||| || ||||||||||||||||| Sbjct 1427 AGAGACCATACTTGGTGCAAGGAGGCTTTAGATCATGGGTTA-AGGAAGGTCTTCGTGTG 1485 Query 1905 AAAGAGCCAAAACCTGAGACAACACTTACCATCCTCAACGAGGAAGCTGAGGCGATTTTT 1964 |||||||| |||||||||||||||||||||||||||||||| ||||||||||||||| || Sbjct 1486 AAAGAGCCGAAACCTGAGACAACACTTACCATCCTCAACGAAGAAGCTGAGGCGATTCTT 1545 Query 1965 GAGGACATAAATCCCTCTCCATTGCAACTATTTGGAGTTGGTGTGGGTTTTTTCGCAGCA 2024 |||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 1546 GAGGACATAAATCCTTCTCCATTGCAACTAGTTGGAGTTGGTGTGGGTTTTTTCGCAGCA 1605 Query 2025 TTGTATGCTTTGTCTGAGTG 2044 |||||||||||||||| ||| Sbjct 1606 TTGTATGCTTTGTCTG-GTG 1624 Score = 117 bits (63), Expect = 4e-25 Identities = 69/72 (96%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 849 TCACTTCCTGATGCGAAAGCTAGCTTTGATGACTTTTCTTCTGGGCTCAAGCAGTCCTTC 908 |||||||||||| | |||||||||||||||||||||||||||||||||||| |||||||| Sbjct 580 TCACTTCCTGATCCTAAAGCTAGCTTTGATGACTTTTCTTCTGGGCTCAAGGAGTCCTTC 639 Query 909 AGCTCTTCACTT 920 |||||||||||| Sbjct 640 AGCTCTTCACTT 651 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 94387627110 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5