BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G59940.1 Length=1540 Score E Sequences producing significant alignments: (Bits) Value Ahg486458 jgi|Araly1|486458|fgenesh2_kg.5__2450__AT3G59940.1 1916 0.0 Ahg483537 jgi|Araly1|483537|fgenesh2_kg.4__2597__AT2G44130.1 309 4e-83 > Ahg486458 jgi|Araly1|486458|fgenesh2_kg.5__2450__AT3G59940.1 Length=1394 Score = 1916 bits (1037), Expect = 0.0 Identities = 1200/1278 (94%), Gaps = 14/1278 (1%) Strand=Plus/Plus Query 100 GTAATAACTAATGGGAGTGTCAAAGAAGAAATCAGGTGAGATTAGAGGAGATTTAATCCC 159 ||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 1 GTAATAATTAATGGGAGTGTCAAAGAAGAAATCAGGTGAGATTAGGGGAGATTTAATCCC 60 Query 160 AGGGTTACCAGAGGAATTAGCAATTGAGTGTTTGGTTAGAGTTCCTTTTCAGTTTCATTC 219 ||| |||||||||||||||||||| ||||||||||||||||||||||||| ||||||||| Sbjct 61 AGGATTACCAGAGGAATTAGCAATAGAGTGTTTGGTTAGAGTTCCTTTTCTGTTTCATTC 120 Query 220 TTCCATCAAATCTGTTTGCCGATCATGGAAATGCGTTATCTCCAGTCGTTCTTTTATCAA 279 |||||| || |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 121 TTCCATGAATTCTGTTTGCCGATCATGGAAATGCGTTATCTCCAGTCGTTCTTTTATCAA 180 Query 280 GGAACGGATAGGTTTTGGTAAAGCTGAATCTCTTCTCTGCCTTGTTCAACCTCTGACTTC 339 |||||||||| |||||||||||||||||||||| ||||| |||||||||||||||||||| Sbjct 181 GGAACGGATAAGTTTTGGTAAAGCTGAATCTCTACTCTGTCTTGTTCAACCTCTGACTTC 240 Query 340 ACCACCGTCTCCGGCGATGATGGAAGGTGGTGAGATGAGTCag-a--agaagaaagagga 396 |||||||||||||| |||||| || ||||||||||||||| || | ||||||||| ||| Sbjct 241 ACCACCGTCTCCGGTGATGATTGACGGTGGTGAGATGAGTGAGAAGCAGAAGAAAGTGGA 300 Query 397 agaagaagGCGAGTCTCAGATGACGCAGCAGCTGCTACAACCGCGTATTACTGGAACGCC 456 |||||||||||||||||||||||||||||| | |||||| ||||||||||||| Sbjct 301 AGAAGAAGGCGAGTCTCAGATGACGCAGCA---G------CCGCGTGTTACTGGAACGCC 351 Query 457 ACTTTACGGTTTAAGCGTTTATAACGCAACGCTGGACACGTGGCACCGAGTCGCGATTCC 516 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 352 ACTTTACGGTTTGAGCGTTTATAACGCAACGCTGGACACGTGGCACCGAGTCGCGATTCC 411 Query 517 TGAACGGATTCCTTTGTTCTGCGAATGCGTTGCGATTCAGGACGCGGGGAAAGTGTTGTT 576 |||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||| Sbjct 412 TGAACGGATTCCTTTGTTCTGCGAGTGCGTTGCGATTCAGGACGCTGGGAAAGTGTTGTT 471 Query 577 AATCGGCGGTTGGGATCCGGAGACGTTGCAGCCTGTGCGAGATGTTTTTGTTCTGGATTT 636 ||||||||||||||||||||||||||||||||||||| ||||||| |||||| ||||||| Sbjct 472 AATCGGCGGTTGGGATCCGGAGACGTTGCAGCCTGTGAGAGATGTGTTTGTTTTGGATTT 531 Query 637 CTTCGCCGGAGAAGGAAGCGGAAGAAGGTTCAGAAGAGGCAGGCCGATGTCGGCGGCGAG 696 |||||||||||||||||||||| | |||| |||||||| | ||||||||||||||||| Sbjct 532 CTTCGCCGGAGAAGGAAGCGGACGGAGGTGGAGAAGAGGGAAACCGATGTCGGCGGCGAG 591 Query 697 ATCGTTTTTCGCCTGTGCTTCTGTTGGTTCGACGAAGGTTTACGTCGCCGGAGGACATGA 756 ||||||||| || || || ||||||||||||||||||||||||||||||||||| ||||| Sbjct 592 ATCGTTTTTTGCTTGCGCGTCTGTTGGTTCGACGAAGGTTTACGTCGCCGGAGGTCATGA 651 Query 757 TGATCAGAAGAACGCTCTCCGATCGGCGGAAGTGTACGATGTAGAGAAAGACGAGTGGTC 816 |||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||| Sbjct 652 TGATCAGAAGAACGCTCTCCGATCGGCGGAAGTGTACGATGTGGAGAAAGATGAGTGGTC 711 Query 817 GATGCTTCCTCCGATGACGGAAGGAAGAGACGAGTGTCACGGATTCTCGATGGCGACGGA 876 || | ||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 712 GACGATTCCTCCGATGACGGAAGGTAGAGACGAGTGTCACGGATTCTCGATGGCGACGGA 771 Query 877 TCCTGGATTTTGTGTTTTGAGCGGTTATGGAACGGAGACGCAAGGCCAATTCCGATCTGA 936 | |||||||||||| ||||||||||| |||||||||||||| ||||||||||||||||| Sbjct 772 TTTTGGATTTTGTGTGTTGAGCGGTTACGGAACGGAGACGCAGGGCCAATTCCGATCTGA 831 Query 937 CGGCGAGATTTACGATCCGATTACGAATTCATGGTCGACAATCGAGAATGTCTGGCCGTT 996 ||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| Sbjct 832 CGGCGAGATTTACGATCCGATTACGAATTCATGGTCGACAATCGAAAATGTATGGCCGTT 891 Query 997 TCCCGATTTGAGTCCGAGAGGTCGCACCGCCGCGGCTGCTGCTGAATTCC-CCGGAGATT 1055 ||| ||||| |||||||||||||||||||||||||||||||||||| ||| ||||||||| Sbjct 892 TCCTGATTTAAGTCCGAGAGGTCGCACCGCCGCGGCTGCTGCTGAA-TCCGCCGGAGATT 950 Query 1056 TTAGAGGTTGTCGGTTATGGTGTTTTATTGATAGCGAGAGACAGAGTCAGCCTCATTGGG 1115 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 951 TTAGAGGTTGTCGGTTATGGTGTTTTATTGATAGCGAGAGACAGAGTCAGCCTCGTTGGG 1010 Query 1116 AAGTTGAAGACGATTCGATGAAATGGAAGGTAATTATGGATACGATTCGGCTTCCGGTGA 1175 || |||| |||||||||||||||||||||||| ||||||| ||||||||||| ||||||| Sbjct 1011 AAATTGAGGACGATTCGATGAAATGGAAGGTAGTTATGGAGACGATTCGGCTCCCGGTGA 1070 Query 1176 CGACGATGACTTCGGTTTTTGCTGGAAGTTTGAGTGGCCAAGCGGTGGCAATGATTGGCG 1235 |||||||||| |||||||| || ||||| ||||||||||||||||||||||||||||||| Sbjct 1071 CGACGATGACGTCGGTTTTCGCAGGAAGCTTGAGTGGCCAAGCGGTGGCAATGATTGGCG 1130 Query 1236 GTGGTGGTGAAGAAAGTGGAACGATGATGGTGAAGACGACGGCGGAGAAGAATGGCGGGA 1295 |||| |||||||||||||| ||||||||| |||||||||||||||| || |||||||||| Sbjct 1131 GTGGCGGTGAAGAAAGTGGGACGATGATGATGAAGACGACGGCGGAAAATAATGGCGGGA 1190 Query 1296 AGTGGAGCCACGTCAACACTCCCTCTGGTTTTTCGAGTCTTCCTTTCTCGTGTTCTTCAA 1355 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1191 AGTGGAGCCACGTCAACACTCCCTCTGGTTTTTCGAGTCTTCCTTTCTCGTGTTCTTCAA 1250 Query 1356 TCTACGTTTGAAGAATCT 1373 |||||||||||||| ||| Sbjct 1251 TCTACGTTTGAAGATTCT 1268 > Ahg483537 jgi|Araly1|483537|fgenesh2_kg.4__2597__AT2G44130.1 Length=1383 Score = 309 bits (167), Expect = 4e-83 Identities = 447/575 (78%), Gaps = 47/575 (8%) Strand=Plus/Plus Query 470 AGCGTTTATAACGCAACGCTGGACACGTGGCACCG-AGTCGCGATT-CC--TGA--A-CG 522 |||||||| ||| | ||||| |||||||||||| | ||||| || || || | | Sbjct 429 AGCGTTTACAACTCCGCGCTGTCCACGTGGCACCGCA-TCGCGTTTCCCGAGGAGGAGCA 487 Query 523 GATTCC-TTTGTTCTGCGAATGCGTTGCGATTCAGGACGCGGGGAA-AGTGTTGTTAATC 580 ||| || || |||||||| ||||| | | |||||||||| ||||| | | || | ||| Sbjct 488 GATCCCGCTT-TTCTGCGAGTGCGTCGTGCTTCAGGACGCCGGGAAGATTCTT-CTCATC 545 Query 581 GGCGGTTGGGATCCGGAGACGTTGCAGCCTG-TGCGAGATGTTTTTGTTCTGGATTTCTT 639 ||||||||||||||||||||||| ||||| | | |||| ||| |||||||| || Sbjct 546 GGCGGTTGGGATCCGGAGACGTTACAGCC-GACGAGAGACGTTCACGTTCTGGA---ATT 601 Query 640 CGCCGGAGAAGGAAGCGGAAGAAGGTTCAGAAGAG-GCAGGCCGATGTCGGCGGCGAGAT 698 |||| | |||||||| || || | | | || | || ||||||| || || ||| Sbjct 602 CGCC-G-GAAGGAAGTGG-AG-A----C-G-AG-GTGC--GCCGATGAAGGAATCGCGAT 648 Query 699 CGTTTTTCGCCTGTGCTTCTGTTGGTTCGACGAAGGTTTACGTCGCCGGAGGACATGATG 758 |||| ||||| || || || || ||||| || ||||| |||||||||||||| || || | Sbjct 649 CGTTCTTCGCTTGCGCCTCCGTCGGTTCAACTAAGGTATACGTCGCCGGAGGTCACGACG 708 Query 759 ATCAGAAGAACGCTCTCCGATCGGCGGAAGTGTACGATGTAGAGAAAGACGAGTGGTCGA 818 ||||||| |||||| | || |||||||| |||||||| || ||||||||||||||||||| Sbjct 709 ATCAGAAAAACGCTTTACGCTCGGCGGAGGTGTACGACGTCGAGAAAGACGAGTGGTCGA 768 Query 819 TGCTTCCTCCGATGACGGAAGGAAGAGACGAGTGTCACGGATTCTCGAT-GGCGACGGAT 877 | |||||||||||||||||||||||||||| ||||| |||||| | || || |||||| Sbjct 769 CGGTTCCTCCGATGACGGAAGGAAGAGACGAATGTCAAGGATTCGCCATTGGT-ACGGAT 827 Query 878 CCT--GGATTTTGTGTTTTGAGCGGTTATGGAACGGAGA-CGCAAGGCCA-ATTCCGATC 933 | | || ||||| || ||||| ||||| |||||||| | | ||||| | ||||||||| Sbjct 828 C-TAAGG-TTTTGCGTATTGAGTGGTTACGGAACGGA-ATCTCAAGGA-AGATTCCGATC 883 Query 934 TGACGGCGAGATTTACGATCC-GATTACGAATTCATGGTCGACAATCGAGAATGTCTGGC 992 |||||| ||||||||||| || | | || ||||| ||||| | |||||| || ||||| Sbjct 884 TGACGGAGAGATTTACGAGCCAGCT-ACAAATTCCTGGTCCAAAATCGAAAACATCTGGA 942 Query 993 CG-TTTCCCGATT-TGAGTCCGAGAGGTCGCACCG 1025 | ||||| ||| | || |||||||||||||||| Sbjct 943 -GATTTCCAGATACT-AGCCCGAGAGGTCGCACCG 975 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 57668630930 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5