BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G59970.3
Length=2047
Score E
Sequences producing significant alignments: (Bits) Value
Ahg486463 jgi|Araly1|486463|fgenesh2_kg.5__2455__AT3G59970.3 3295 0.0
Ahg483539 jgi|Araly1|483539|fgenesh2_kg.4__2599__AT2G44160.1 1906 0.0
Ahg346222 jgi|Araly1|346222|fgenesh1_pg.C_scaffold_4002564 726 0.0
Ahg942778 jgi|Araly1|942778|scaffold_603322.1 407 2e-112
> Ahg486463 jgi|Araly1|486463|fgenesh2_kg.5__2455__AT3G59970.3
Length=2031
Score = 3295 bits (1784), Expect = 0.0
Identities = 1964/2049 (96%), Gaps = 20/2049 (1%)
Strand=Plus/Plus
Query 1 GAGTGAGTAAACAAACCAGAGAGACCAAACTTGCCTCTCCACCACCACTTCCTCTACCTA 60
||||||||||| ||||||||||||||||||||||||| ||| | | ||| |
Sbjct 1 GAGTGAGTAAAGGAACCAGAGAGACCAAACTTGCCTCT------CCA----C-C-ACC-A 47
Query 61 TCTAATTCCGAATCTGGATTTGGATTTGGATCTCATTTCGATTCAACGATGAAGGTGGTT 120
|| ||||||||||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct 48 -CT--TTCCGAATCTGGATTTGGATTTGGATCTCATTTCGATTCGACAATGAAGGTGGTT 104
Query 121 GATAAGATCAAATCCGTGACGGAGCAAGGCCAAACAGCTTTCTCCTTCGAGTTTTTCCCA 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 105 GATAAGATCAAATCCGTGACGGAGCAAGGCCAAACAGCTTTCTCCTTCGAGTTTTTCCCA 164
Query 181 CCGAAGACAGAAGATGGCGTCGAGAATCTCTTTGAACGAATGGATCGATTGGTCTCTTAT 240
|| ||||| || ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 165 CCCAAGACGGAGGATGGCGTCGAGAATCTCTTTGAACGAATGGATCGATTGGTCTCTTAT 224
Query 241 GGACCTACCTTCTGCGATATCACTTGGGGTGCTGGTGGATCCACAGCTGATCTCACTCTC 300
|||||||||||||||||||||||||||||||| || |||||||| || ||||||||||||
Sbjct 225 GGACCTACCTTCTGCGATATCACTTGGGGTGCCGGAGGATCCACCGCCGATCTCACTCTC 284
Query 301 GAGATTGCTTCTAGGATGCAGAATGTTATCTGCGTCGAGACTATGATGCATCTCACTTGT 360
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 285 GAGATCGCTTCTAGGATGCAGAATGTTATCTGCGTCGAGACTATGATGCATCTCACTTGT 344
Query 361 ACCAACATGCCGATTGAGAAGATTGATCACGCGCTTGAGACGATTAGATCTAATGGAATT 420
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 345 ACCAACATGCCGATTGAGAAGATTGACCACGCGCTTGAGACGATTAGATCTAATGGAATT 404
Query 421 CAGAATGTGCTTGCTCTTAGAGGAGATCCTCCTCATGGACAAGATAAGTTTGTTCAGGTT 480
|||||||||||||| |||||||||||||| ||||||||||| |||||||| |||||||||
Sbjct 405 CAGAATGTGCTTGCGCTTAGAGGAGATCCGCCTCATGGACAGGATAAGTTCGTTCAGGTT 464
Query 481 GAAGGAGGATTTGCTTGTGCTTTGGATCTGGTGAATCACATTCGTAGCAAGTATGGTGAT 540
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 465 GAAGGAGGATTTGCTTGTGCTTTGGATCTGGTGAATCACATTCGAAGCAAGTATGGTGAT 524
Query 541 TACTTTGGAATCACTGTTGCTGGTTATCCTGAGGCTCATCCGGATGTTATTGAAGCTGAT 600
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 525 TACTTTGGAATCACTGTTGCTGGTTATCCTGAGGCTCATCCTGATGTTATTGAAGCTGAT 584
Query 601 GGACTTGCTACTCCTGAATCTTATCAGAGTGATCTTGCTTACTTGAAGAAAAAGGTTGAT 660
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 585 GGACTTGCTACTCCTGAATCTTATCAGAGTGATCTTGCTTACCTGAAGAAAAAGGTTGAT 644
Query 661 GCTGGAGCAGATTTGATTGTGACTCAGCTTTTCTATGATACTGATATATTCCTCAAGTTT 720
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 645 GCTGGAGCAGATTTGATTGTGACTCAGCTTTTCTATGATACTGATATATTCCTCAAATTT 704
Query 721 GTGAATGATTGTCGGCAAATCGGGATTAATTGTCCCATTGTTCCTGGAATTATGCCTATT 780
|||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| |||
Sbjct 705 GTGAATGATTGTCGCCAAATCGGGATAAATTGTCCCATTGTTCCTGGAATTATGCCCATT 764
Query 781 TCCAACTACAAGGGGTTCTTGCGTATGGCTGGTTTCTGTAAGACCAAGATACCCGCTGAG 840
|||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct 765 TCCAACTACAAGGGGTTCTTGCGTATGGCTGGTTTCTGCAAGACCAAGATACCTGCTGAG 824
Query 841 CTCACTGCTGCCTTAGAGCCTATTAAGGATAATGACGAGGCTGTTAAAGCCTATGGAATT 900
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct 825 CTCACTGCTGCCTTAGAGCCTATTAAGGATAATGACGAGGCTGTCAAAGCCTATGGTATT 884
Query 901 CACTTTGCAACAGAAATGTGCAAAAAGATTTTGGCCCATGGAATCACTTCCCTTCATCTC 960
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
Sbjct 885 CACTTTGCAACAGAAATGTGCAAAAAGATTTTGGCCCATGGAATCACTACCCTTCATATT 944
Query 961 TACACATTGAACGTGGACAAATCAGCTATTGGGATATTAATGAACCTTGGTCTGATTGAT 1020
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 945 TACACATTGAACGTGGACAAATCAGCTATTGGGATATTAATGAACCTTGGTTTGATTGAT 1004
Query 1021 GAGTCAAAAATTTCTCGTTCTCTACCTTGGAGACGCCCTGCAAATGTTTTCCGTACTAAG 1080
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1005 GAGTCAAAAATTTCTCGTTCTCTACCTTGGAGACGCCCTGCAAATGTTTTCCGTACTAAG 1064
Query 1081 GAAGATGTTCGCCCAATTTTCTGGGCAAACCGTCCAAAGAGCTACATATCTAGAACAAAG 1140
||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct 1065 GAAGATGTTCGCCCAATTTTCTGGGCAAATCGTCCAAAGAGCTATATATCTAGAACAAAG 1124
Query 1141 GGCTGGAATGACTTCCCACATGGACGTTGGGGTGATTCACACAGTGCAGCATACAGTACA 1200
|||||||||||||||||||||||||||||||||||| ||| ||||||| |||| ||||||
Sbjct 1125 GGCTGGAATGACTTCCCACATGGACGTTGGGGTGATACACGCAGTGCATCATATAGTACA 1184
Query 1201 CTTTCGGATTATCAGTTTGCGCGCCCAAAAGGACGTGACAAGAAGCTTCAGCAAGAATGG 1260
||||| ||||||||||| | |||||||||| ||||||||||||||||||||||||||||
Sbjct 1185 CTTTCAGATTATCAGTTCACACGCCCAAAAGCACGTGACAAGAAGCTTCAGCAAGAATGG 1244
Query 1261 GTCGTCCCACTGAAAAGCATTGAAGATGTTCAAGAGAAATTCAAAGAGCTCTGCATTGGA 1320
|| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1245 GTTGTCCCATTGAAAAGCATTGAAGATGTTCAAGAGAAATTCAAAGAGCTCTGCATTGGA 1304
Query 1321 AACTTAAAAAGCAGCCCATGGTCTGAATTAGATGGACTCCAGCCAGAGACAAAGATCATA 1380
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1305 AACTTAAAAAGCAGTCCATGGTCTGAATTAGATGGACTCCAGCCAGAGACAAAGATCATA 1364
Query 1381 AATGAGCAACTCGGAAAAATCAACTCCAACGGTTTCCTGACCATTAATAGCCAACCATCA 1440
|| ||||||||||| |||||||||||||| |||||||||||||| |||||||||||||||
Sbjct 1365 AACGAGCAACTCGGGAAAATCAACTCCAATGGTTTCCTGACCATCAATAGCCAACCATCA 1424
Query 1441 GTCAATGCAGCCAAATCCGATTCTCCAGCTATTGGATGGGGTGGTCCTGGTGGTTACGTC 1500
||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1425 GTCAATGCAGCTAAATCCGATTCCCCAGCTATTGGATGGGGTGGTCCTGGTGGTTACGTC 1484
Query 1501 TACCAGAAAGCTTATCTGGAGTTCTTCTGTTCAAAGGATAAGTTAGACACACTTGTGGAG 1560
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1485 TACCAGAAAGCTTATCTGGAGTTCTTCTGTTCAAAGGATAAGTTAGACACACTTGTGGAG 1544
Query 1561 AAATCCAAAGCTTTTCCTTC-TATCACCTACATGGCCGTGAACAAATCAGAGAATTGGGT 1619
||||||||||||||||| || ||||||||||||||||||||||||| |||||||||||||
Sbjct 1545 AAATCCAAAGCTTTTCC-TCTTATCACCTACATGGCCGTGAACAAAGCAGAGAATTGGGT 1603
Query 1620 ATCAAACACCGGTGAGTCCGATGTGAATGCAGTTACTTGGGGAGTGTTCCCAGCTAAGGA 1679
||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1604 ATCAAACACCGATGAGTGCGATGTGAATGCAGTTACTTGGGGAGTGTTCCCAGCTAAGGA 1663
Query 1680 GGTTATTCAACCGACGATCGTGGATCCAGCCAGTTTCAAAGTCTGGAAAGACGAAGCGTT 1739
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1664 GGTTATTCAACCGACGATCGTGGATCCAGCCAGTTTCAAAGTCTGGAAAGACGAAGCGTT 1723
Query 1740 TGAGATTTGGTCAAGAAGCTGGGCTAACTTGTACCCAGAAGATGACCCTTCTAGAAAGTT 1799
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||
Sbjct 1724 TGAGATTTGGTCAAGAAGCTGGGCTAATTTGTACCCAGAAGATGACCCTTCTAGAAAATT 1783
Query 1800 GCTCGAGGAGGTGAAGAACAGCTACTATTTGGTAAGCTTAGTGGACAACAATTACATCAA 1859
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1784 GCTCGAGGAGGTGAAGAACAGCTACTATTTGGTAAGCTTAGTGGACAACGATTACATCAA 1843
Query 1860 TGGTGATATCTTCT-CTGTCTTTGCTTGATCTCCGAGAAAACCACCGGCGAAGAGGAAAC 1918
||||||||| || | ||||||||||||||||||||||||||||| |||| ||||||||||
Sbjct 1844 TGGTGATATATT-TGCTGTCTTTGCTTGATCTCCGAGAAAACCAACGGCAAAGAGGAAAC 1902
Query 1919 ATTCGATTTCGAGATTTGTTTTGTACCTTTTAAAGTTATTTTTGATTCGTAATAACCTTA 1978
||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1903 ATTCGATTTCGCGATTTGTTTTGTACCTTTTAAAGTTACTTTTGATTCGTAATAACCTTA 1962
Query 1979 CTTTGATGAATCAACAAAAACATCAGTTTGATTGCAATGaaaaaaaTCGCCTTAGCGGTT 2038
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1963 TTTTGATGAATCAACAAAAACATCAGTTTGATTGCAATGAAAAAAATCGCCTTAGCGGTC 2022
Query 2039 TGTTCTTTC 2047
|||||||||
Sbjct 2023 TGTTCTTTC 2031
> Ahg483539 jgi|Araly1|483539|fgenesh2_kg.4__2599__AT2G44160.1
Length=1953
Score = 1906 bits (1032), Expect = 0.0
Identities = 1555/1808 (86%), Gaps = 33/1808 (2%)
Strand=Plus/Plus
Query 108 GATGAAGGTGGTTGATAAGATCAAATCCGTGACGGAGC-AAGGCCAAACAGC-TTTCTCC 165
|||||||||| | ||||||||| | || || | || | ||||| ||||||| ||| |||
Sbjct 23 GATGAAGGTGATAGATAAGATCCAGTCATTGGCCGA-CGAAGGCAAAACAGCGTTT-TCC 80
Query 166 TTCGAGTTTTTCCCACCGAAGACAGAAGATGGCGTCGAGAATCTCTTTGA-ACGAATGGA 224
||||| || |||||||| || ||||||||||| ||||| ||||||||||| | |||||||
Sbjct 81 TTCGAATTCTTCCCACCAAAAACAGAAGATGGAGTCGACAATCTCTTTGAGA-GAATGGA 139
Query 225 TCGATTGGTCTCTTATGGACCTACCTTCTGCGATATCACTTGGGGTGCTGGTGGATCCAC 284
|||| |||| ||||||| || || || ||||||||||| ||||| ||||||||||| ||
Sbjct 140 TCGAATGGTGGCTTATGGTCCAACGTTTTGCGATATCACATGGGGAGCTGGTGGATCTAC 199
Query 285 AGCTGATCTCACTCTCGAGATTGCTTCTAGGATGCAGAATGTTATCTGCGTCGAGACTAT 344
|| ||||| || || || || ||||| |||||||| || ||| | || || |||| |||
Sbjct 200 CGCAGATCTAACGCTTGATATAGCTTCGAGGATGCAAAACGTTGTTTGTGTTGAGAGTAT 259
Query 345 GATGCATCTCACTTGTACCAACATGCC-GATTGAGAAGATTGATCACGCGCTTGAGACGA 403
||||||||| || ||||| |||||||| | |||||||||||||||| || |||||||| |
Sbjct 260 GATGCATCTTACATGTACTAACATGCCTG-TTGAGAAGATTGATCATGCTCTTGAGACCA 318
Query 404 TTAGATCTAATGGAATTCAGAATGTGCTTGCTCTTAGAGGAGATCCTCCTCATGGACAAG 463
||||||||||||| |||||||||||||||||||||||||| |||||||||||||| ||||
Sbjct 319 TTAGATCTAATGGTATTCAGAATGTGCTTGCTCTTAGAGGTGATCCTCCTCATGGTCAAG 378
Query 464 ATAAGTTTGTTCAGGTTGAAGGAGGATTTGCTTGTGCTTTGGATCTGGTGAATCACATTC 523
|||||||||||||||||||||| || |||| ||||||||||||||| || ||||||||||
Sbjct 379 ATAAGTTTGTTCAGGTTGAAGGTGGTTTTGATTGTGCTTTGGATCTCGTTAATCACATTC 438
Query 524 GTAGCAAGTATGGTGATTACTTTGGAATCACTGTTGCTGGTTATCCTGAGGCTCATCCGG 583
| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
Sbjct 439 GAAGCAAGTATGGTGATTACTTTGGTATCACTGTTGCTGGTTATCCTGAGGCTCATCCTG 498
Query 584 ATGTTATTGAAGCTG-ATGGACTTGC-TACTCCTGAATCTTATCAGAGTGATCTTGCTTA 641
||||||||| | | |||| ||||| | || |||| |||||||||||||||||| ||
Sbjct 499 ATGTTATTGGTG-AGAATGGTCTTGCGT-CTAATGAAGCTTATCAGAGTGATCTTGAGTA 556
Query 642 CT-TGAAGAAAAAGGTTGATGCTGGAGCAGATTTGATTGTGACTCAGCTTTTCTATGATA 700
| | ||||||||| ||||||||||||| ||| ||||||| |||||||||||||||||||
Sbjct 557 -TCTCAAGAAAAAGATTGATGCTGGAGCTGATCTGATTGTTACTCAGCTTTTCTATGATA 615
Query 701 CTGATATATTCCTCAAGTTTGTGAATGATTGTCGGCAAATCGGGATTAATTGTCCCATTG 760
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 616 CTGATATATTCCTCAAGTTTGTGAATGATTGTCGGCAAATTGGGATTAATTGTCCCATTG 675
Query 761 TTCCTGGAATTATGCCTATTTCCAACTACA-AGGGGTTCTTGCGTATGGCTGGTTTCTGT 819
|||||||||||||||||||| ||||||| |||| |||||||||||| ||||||||||
Sbjct 676 TTCCTGGAATTATGCCTATTAATAACTACAGAGGG-TTCTTGCGTATGACTGGTTTCTGC 734
Query 820 AAGACCAAGATACCCGCTGAGCTCACTG-CTGCCTTAGAGCCTATTAAGGATAATGACGA 878
||||| |||||||| | |||| ||| || | ||||| |||||||| ||||||||||| ||
Sbjct 735 AAGACTAAGATACCAGTTGAGGTCA-TGGCGGCCTTGGAGCCTATCAAGGATAATGAAGA 793
Query 879 GGCTGTTAAAGCCTATGGAATTCACTTTGCAACAGAAATGTGCAAAAAGATTTTGGCCCA 938
||||| ||||||||||| |||||| ||| |||||| ||||| |||||||| ||||| ||
Sbjct 794 AGCTGTGAAAGCCTATGGTATTCACCTTGGAACAGAGATGTGTAAAAAGATGTTGGCTCA 853
Query 939 TGGAATCACTTCCCTTCATCTCTACACATTGAACGTGGACAAATCAGCTATTGGGATATT 998
|||| ||| || ||||||||||||||||||||| |||| ||||||||| ||| |||||
Sbjct 854 TGGAGTCAAGTCTCTTCATCTCTACACATTGAACATGGAGAAATCAGCTCTTGCAATATT 913
Query 999 AATGAACCTTGGTCTGATTGATGAGTCAAAAATTTCTCGTTCTCTACCTTGGAGACGCCC 1058
||||| |||||| ||||||| ||||| ||||||||||||||| |||| |||||||||||
Sbjct 914 GATGAATCTTGGTATGATTGACGAGTCCAAAATTTCTCGTTCTTTACCATGGAGACGCCC 973
Query 1059 TGCAAATGTTTTCCGTACTAAGGAAGATGTTCGCCCAATTTTCTGGGCAAACCGTCCAAA 1118
||||||||||||||||| |||||||||||| ||||| |||||||||||||||||||||||
Sbjct 974 TGCAAATGTTTTCCGTAATAAGGAAGATGTGCGCCCCATTTTCTGGGCAAACCGTCCAAA 1033
Query 1119 GAGCTACATATCTAGAACAAAGGGCTGG-AATGACTTCCCACATGGACGTTGGGGTGATT 1177
||||||||| |||||||| ||||||||| || ||||||||||| || || ||||||||||
Sbjct 1034 GAGCTACATTTCTAGAACCAAGGGCTGGGAA-GACTTCCCACAAGGCCGGTGGGGTGATT 1092
Query 1178 CACACAGTGCAGCATACAGTACACTTTCGGATTATCAGTT-TGCGCGCCCAAAAGGACGT 1236
||| |||||| |||| || |||| |||||| ||||||| | | || ||| || |||
Sbjct 1093 CACGCAGTGCTTCATATGGTGCACTCTCGGATCATCAGTTCT-CACGTCCACGAGCACGA 1151
Query 1237 GACAAGAAGCTTCAGCAAGAATGGGTCGTCCCACTGAAAAGCATTGAAGATGTTCAAGAG 1296
|||||||||||| | ||||||||||| |||||||||||||| |||||||| |||| |||
Sbjct 1152 GACAAGAAGCTTGAACAAGAATGGGTTGTCCCACTGAAAAGTGTTGAAGATATTCAGGAG 1211
Query 1297 AAATTCAAAGAGCTCTGCATTGGAAAC-TTAAAAAGCAG-CCCATGGTCTGAATTAGATG 1354
|||||||| ||||||||| |||||||| |||||| |||| ||| ||||||||||||||||
Sbjct 1212 AAATTCAAGGAGCTCTGCCTTGGAAACCTTAAAA-GCAGTCCC-TGGTCTGAATTAGATG 1269
Query 1355 GACTCCAGCCAGAGACAAAGATCATAAATGAGCAACTCGG-AAAAATCAACTCCAACGGT 1413
|||||||||||||||||||||| ||||| |||||||| || ||||||||||||||| ||
Sbjct 1270 GACTCCAGCCAGAGACAAAGATAATAAACGAGCAACT-GGTAAAAATCAACTCCAAAGGC 1328
Query 1414 TTCCTGACCATTAATAGCCAACCATCAGTCAATGCAGCCAAATCCGATTCTCCAGCTATT 1473
||| ||||||| |||||||||||||||||||| || | | ||| ||||| ||| || ||
Sbjct 1329 TTCTTGACCATCAATAGCCAACCATCAGTCAACGCCGAGAGATCTGATTCCCCAACTGTT 1388
Query 1474 GGATGGGGTGGTCCTGGTGGTTACGTCTACCAGAAAG-CTTATCTGGAGTTCTTCTGTTC 1532
|||||||| ||||||| ||| || || ||||| |||| ||||||| ||||||||||| ||
Sbjct 1389 GGATGGGGAGGTCCTGTTGGATATGTATACCA-AAAGGCTTATCTAGAGTTCTTCTGCTC 1447
Query 1533 AAAGGATAAGTTAGACACACTTGTGGAGAAATCCAAAGCTTTTCCTTCTATCACCTACAT 1592
|||||| || ||||| || | || ||||||| ||||||||| || || || || |||||
Sbjct 1448 AAAGGAGAAATTAGATGCAGTGGTCGAGAAATGCAAAGCTTTGCCATCGATTACTTACAT 1507
Query 1593 GGCCGTGAACAAATCAGAGAATTGGGTATCAAACACCGGTGA-GTCCGATGTGAATGCAG 1651
| | ||||||||| ||| || |||||||| ||||| | | | | ||||||||||| |
Sbjct 1508 GTCTGTGAACAAAGGAGAAAACTGGGTATCGAACACTGCCCAAG-CTGATGTGAATGCTG 1566
Query 1652 TTACTTGGGGAGTGTTCCCAGCTAAGGAGGTTATTCAACCGACGATCGTGGATCCAGCCA 1711
||||||||||||| ||||| |||||||| | |||||||| || || || ||||| || |
Sbjct 1567 TTACTTGGGGAGTTTTCCCGGCTAAGGAAATCATTCAACCAACCATTGTCGATCCCGCTA 1626
Query 1712 GTTTCAAAGTCTGGAAAGACGAAGCGTTTGAGATTTGGTCAAGAAGCTGGGCTAACTTGT 1771
| |||||||||||||| || ||||| ||||||| ||||||||||||||||||||||||||
Sbjct 1627 GCTTCAAAGTCTGGAAGGATGAAGCATTTGAGACTTGGTCAAGAAGCTGGGCTAACTTGT 1686
Query 1772 ACCCAGAAGATGACCCTTCTAGAAAGTTGCTCGAGGAGGTGAAGAACAGCTACTATTTGG 1831
| ||||||| ||||||||| ||||| ||||||||||||||||||||||||||||||||||
Sbjct 1687 ATCCAGAAGCTGACCCTTCCAGAAACTTGCTCGAGGAGGTGAAGAACAGCTACTATTTGG 1746
Query 1832 TAAGCTTAGTGGACAACAATTACATCAATGGTGATATCTTCTCTGTCTTTGCTTGATCTC 1891
||||||| ||||| ||| |||||||||||||| | || ||| | ||||||||| ||| |
Sbjct 1747 TAAGCTTGGTGGAGAACGATTACATCAATGGTAACATATTCGCGGTCTTTGCT-GATATT 1805
Query 1892 CGAGAAAA 1899
|||||||
Sbjct 1806 TGAGAAAA 1813
> Ahg346222 jgi|Araly1|346222|fgenesh1_pg.C_scaffold_4002564
Length=1068
Score = 726 bits (393), Expect = 0.0
Identities = 616/724 (85%), Gaps = 14/724 (2%)
Strand=Plus/Plus
Query 1074 TACTAAGGAAGATGTTCGCCCAATTTTCTGGGCAAACCGTCCAAAGAGCTACATATCTAG 1133
||||||||||||||| ||||| |||||||||||||||||||||||||||||||| |||||
Sbjct 279 TACTAAGGAAGATGTGCGCCCCATTTTCTGGGCAAACCGTCCAAAGAGCTACATTTCTAG 338
Query 1134 AACAAAGGGCT-GGAATGACTTCCCACATGGACGTTGGGGTGATTCACACAGTGCAGCAT 1192
||| ||||||| |||| ||||||||||| || || ||||||||||||| |||||| |||
Sbjct 339 AACCAAGGGCTGGGAA-GACTTCCCACAAGGCCGGTGGGGTGATTCACGCAGTGCTTCAT 397
Query 1193 ACAGTACACTTTCGGATTATCAGTT-TGCGCGCCCAAAAGGACGTGACAAGAAGCTTCAG 1251
| || |||| |||||| ||||||| | | || ||| || ||||||||||||||||||
Sbjct 398 ATGGTGCACTCTCGGATCATCAGTTCT-CACGTCCACGAGCACGTGACAAGAAGCTTCAA 456
Query 1252 CAAGAATGGGTCGTCCCACTGAAAAGCATTGAAGATGTTCAAGAGAAATTCAAAGAGCTC 1311
||||||||||| |||||||||||||| |||||||| |||| ||||||||||| ||||||
Sbjct 457 CAAGAATGGGTTGTCCCACTGAAAAGTGTTGAAGATATTCAGGAGAAATTCAAGGAGCTC 516
Query 1312 TGCATTGGAAA-CTTAAAAAGCAG-CCCATGGTCTGAATTAGATGGACTCCAGCCAGAGA 1369
||| ||||||| ||| |||||||| ||| |||||||||||||||||||||||||||||||
Sbjct 517 TGCCTTGGAAACCTT-AAAAGCAGTCCC-TGGTCTGAATTAGATGGACTCCAGCCAGAGA 574
Query 1370 CAAAGATCATAAATGAGCAACTCGG-AAAAATCAACTCCAACGGTTTCCTGACCATTAAT 1428
||||||| ||||| |||||||| || ||||||||||||||| || ||| ||||||| |||
Sbjct 575 CAAAGATAATAAACGAGCAACT-GGTAAAAATCAACTCCAAAGGCTTCTTGACCATCAAT 633
Query 1429 AGCCAACCATCAGTCAATGCAGCCAAATCCGATTCTCCAGCTATTGGATGGGGTGGTCCT 1488
||||||||||||||||| || | | ||| ||||| ||| || |||||||||| ||||||
Sbjct 634 AGCCAACCATCAGTCAACGCCGAGAGATCTGATTCCCCAACTGTTGGATGGGGAGGTCCT 693
Query 1489 GGTGGTTACGTCTACCAGAAAG-CTTATCTGGAGTTCTTCTGTTCAAAGGATAAGTTAGA 1547
| ||| || || ||||| |||| ||||||| ||||||||||| |||||||| || |||||
Sbjct 694 GTTGGATATGTATACCA-AAAGGCTTATCTAGAGTTCTTCTGCTCAAAGGAGAAATTAGA 752
Query 1548 CACACTTGTGGAGAAATCCAAAGCTTTTCCTTCTATCACCTACATGGCCGTGAACAAATC 1607
|| | || ||||||| ||||||||| || || || || |||||| | |||||||||
Sbjct 753 TGCAGTGGTCGAGAAATGCAAAGCTTTGCCATCGATTACTTACATGTCTGTGAACAAAGG 812
Query 1608 AGAGAATTGGGTATCAAACACCGGTGA-GTCCGATGTGAATGCAGTTACTTGGGGAGTGT 1666
||| || |||||||| ||||| | | | | ||||||||||| |||||||||||||| |
Sbjct 813 AGAAAACTGGGTATCGAACACTGCCCAAG-CTGATGTGAATGCTGTTACTTGGGGAGTTT 871
Query 1667 TCCCAGCTAAGGAGGTTATTCAACCGACGATCGTGGATCCAGCCAGTTTCAAAGTCTGGA 1726
|||| |||||||| | |||||||| || || || ||||| || || |||||||||||||
Sbjct 872 TCCCGGCTAAGGAAATCATTCAACCAACCATTGTCGATCCCGCTAGCTTCAAAGTCTGGA 931
Query 1727 AAGACGAAGCGTTTGAGATTTGGTCAAGAAGCTGGGCTAACTTGTACCCAGAAGATGACC 1786
| || ||||| ||||||| ||||||||||||||||||||||||||||| ||||| |||||
Sbjct 932 AGGATGAAGCATTTGAGACTTGGTCAAGAAGCTGGGCTAACTTGTACCAAGAAGCTGACC 991
Query 1787 CTTC 1790
||||
Sbjct 992 CTTC 995
> Ahg942778 jgi|Araly1|942778|scaffold_603322.1
Length=531
Score = 407 bits (220), Expect = 2e-112
Identities = 384/463 (83%), Gaps = 12/463 (3%)
Strand=Plus/Plus
Query 1316 TTGGAAA-CTTAAAAAGCAG-CCCATGGTCTGAATTAGATGGACTCCAGCCAGAGACAAA 1373
||||||| ||| |||||||| ||| |||||||||||||||||||||||||||||||||||
Sbjct 75 TTGGAAACCTT-AAAAGCAGTCCC-TGGTCTGAATTAGATGGACTCCAGCCAGAGACAAA 132
Query 1374 GATCATAAATGAGCAACTCGG-AAAAATCAACTCCAACGGTTTCCTGACCATTAATAGCC 1432
||| ||||| |||||||| || ||||||||||||||| || ||| ||||||| || ||||
Sbjct 133 GATAATAAACGAGCAACT-GGTAAAAATCAACTCCAAAGGCTTCTTGACCATCAACAGCC 191
Query 1433 AACCATCAGTCAATGCAGCCAAATCCGATTCTCC-AGCTATTGGATGGGGTGGTCCTGGT 1491
||||||||||||| || | | ||| ||||| || | || |||| ||||| ||||||| |
Sbjct 192 AACCATCAGTCAACGCCGAGAGATCTGATTC-CCTAACTGTTGGGTGGGGAGGTCCTGTT 250
Query 1492 GGTTACGTCTACCAGAAAG-CTTATCTGGAGTTCTTCTGTTCAAAGGATAAGTTAGACAC 1550
|| || || ||||| |||| ||||||| ||||||||||| |||||||| || ||||| |
Sbjct 251 GGATATGTATACCA-AAAGGCTTATCTAGAGTTCTTCTGCTCAAAGGAGAAATTAGATGC 309
Query 1551 ACTTGTGGAGAAATCCAAAGCTTTTCCTTCTATCACCTACATGGCCGTGAACAAATCAGA 1610
| | |||||||||| ||||||||| || || || || |||||||| ||||||||| |||
Sbjct 310 AGTGGTGGAGAAATGCAAAGCTTTGCCATCGATTACTTACATGGCTGTGAACAAAGGAGA 369
Query 1611 GAATTGGGTATCAAACACCGGTGAGTCCGATGTGAATGCAGTTACTTGGGGAGTGTTCCC 1670
|| |||||||| ||||| | | || ||||||||||| ||||| |||||||| |||||
Sbjct 370 AAACTGGGTATCGAACACTGCCCAATCTGATGTGAATGCTGTTACATGGGGAGTTTTCCC 429
Query 1671 AGCTAAGGAGGTTATTCAACCGACGATCGTGGATCCAGCCAGTTTCAAAGTCTGGAAAGA 1730
|||||||| | |||||||| || || || ||||| || || |||||||||||||| ||
Sbjct 430 GGCTAAGGAAATCATTCAACCAACCATTGTCGATCCCGCTAGCTTCAAAGTCTGGAAGGA 489
Query 1731 CGAAGCGTTTGAG-ATTTGGTCAAGAAGCTGGGCTAACTTGTA 1772
||||| ||| || | ||||| |||| ||||||||||||||||
Sbjct 490 TGAAGCATTT-AGGACTTGGTGAAGATGCTGGGCTAACTTGTA 531
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 76980385145
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5