BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G59990.1
Length=1621
Score E
Sequences producing significant alignments: (Bits) Value
Ahg486467 jgi|Araly1|486467|fgenesh2_kg.5__2459__AT3G59990.3 2484 0.0
Ahg483541 jgi|Araly1|483541|fgenesh2_kg.4__2601__AT2G44180.1 1293 0.0
Ahg346227 jgi|Araly1|346227|fgenesh1_pg.C_scaffold_4002569 1216 0.0
Ahg924340 jgi|Araly1|924340|scaffold_105621.1 468 6e-131
Ahg922978 jgi|Araly1|922978|scaffold_104259.1 254 2e-66
> Ahg486467 jgi|Araly1|486467|fgenesh2_kg.5__2459__AT3G59990.3
Length=1577
Score = 2484 bits (1345), Expect = 0.0
Identities = 1486/1554 (96%), Gaps = 10/1554 (1%)
Strand=Plus/Plus
Query 62 AAAGGTGCTTTGTTATCAAGGTGAAAATCG-ATTTGAAGATGGCGAGCGAAAGTCCTGA- 119
||| |||||||||||| ||||||| ||||| |||||||||||||||||||||| |||||
Sbjct 27 AAA-GTGCTTTGTTATTAAGGTGAGAATCGAATTTGAAGATGGCGAGCGAAAGCCCTGAT 85
Query 120 --TGTTGCTGTTGTAGCTCCGGTGGTGGAGAATGGCGGCGCTGAGTCCTCTAATGGTAAA 177
||||| |||||||||||| ||||||||||||||||||||||| ||||||||||| |||
Sbjct 86 GTTGTTGTTGTTGTAGCTCCCGTGGTGGAGAATGGCGGCGCTGAATCCTCTAATGGAAAA 145
Query 178 GAGGAACAATTGGAATCTGAGCTTTCGAAGAAGCTTGAGATTGCAGAAGATGGTCaagag 237
|| |||||||||||||||||||||||||||||||||||||| |||||||||| | |||||
Sbjct 146 GATGAACAATTGGAATCTGAGCTTTCGAAGAAGCTTGAGATCGCAGAAGATGCTAAAGAG 205
Query 238 gagaacgatggagaagaaggaagcaaagctgagacttcaacgaagaagaagaagaagaaa 297
|| ||||||| ||| |||||||||||||||||| |||||||||||||||||||||||||
Sbjct 206 GACAACGATGAAGATGAAGGAAGCAAAGCTGAGGCTTCAACGAAGAAGAAGAAGAAGAAG 265
Query 298 aataaaagcaagaagaagaagGAACTCCCTCAACAGACTGATCCACCTTCAATTCCTGTC 357
||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||
Sbjct 266 AATAAAAGCAAGAAGAAGAAGGAACTCCCTCAACAGACTAATCCACCTTCGATTCCTGTC 325
Query 358 GTTGAGCTCTTCCCATCAGGAGAGTTTCCTGAAGGTGAAATCCAAGAGTATAAGGATGAT 417
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 326 GTTGAGCTCTTCCCATCTGGAGAGTTTCCTGAAGGTGAAATCCAAGAGTATAAGGATGAT 385
Query 418 AATCTTTGGAGAACAACATCTGAAGAGAAGAGAGAGCTGGAGCGTTTTGAAAAGCCAATA 477
||||| |||||||||||||||||||||||||||||| |||||||||| ||||||||||||
Sbjct 386 AATCTGTGGAGAACAACATCTGAAGAGAAGAGAGAGTTGGAGCGTTTGGAAAAGCCAATA 445
Query 478 TATAACTCTGTTCGCCGAGCTGCAGAAGTTCATCGCCAGGTTCGTAAATATGTCAGAAGC 537
|| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 446 TACAACTCTGTTCGCCAAGCTGCAGAAGTTCATCGCCAGGTTCGTAAATATGTCAGAAGC 505
Query 538 ATAGTGAAGCCTGGAATGTTGATGACTGATATATGTGAGACCCTAGAGAATACTGTTCGT 597
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 506 ATAGTGAAGCCTGGAATGTTGATGACTGATATATGTGAGACCTTAGAGAATACTGTTCGC 565
Query 598 AAGTTGATATCAGAGAATGGTCTTCAAGCTGGTATTGCATTCCCTACAGGATGCTCTTTG 657
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 566 AAGTTGATATCAGAGAATGGTCTTCAAGCTGGTATTGCATTCCCTACAGGATGCTCTTTG 625
Query 658 AATTGGGTCGCTGCTCATTGGACACCAAACTCTGGAGATAAGACTGTACTTCAGTACGAC 717
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 626 AATTGGGTCGCTGCTCATTGGACACCAAACTCTGGAGATAAGACTGTACTTCAGTATGAC 685
Query 718 GATGTTATGAAATTGGACTTTGGAACACATATTGATGGGCATATTATTGACTGTGCATTT 777
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 686 GATGTTATGAAATTGGATTTTGGAACACATATTGATGGGCATATTATTGACTGTGCATTT 745
Query 778 ACAGTTGCCTTCAACCCTATGTTCGATCCTCTCTTAGCAGCCTCTCGTGAAGCTACGTAT 837
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 746 ACAGTTGCGTTCAACCCTATGTTCGATCCTCTCTTAGCAGCCTCTCGTGAAGCTACGTAT 805
Query 838 ACCGGTATCAAGGAAGCTGGGATCGATGTCCGTCTCTGTGATATCGGTGCTGCTATTCAG 897
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 806 ACCGGTATCAAGGAAGCTGGGATCGATGTCCGTCTCTGTGATATCGGTGCTGCAATTCAG 865
Query 898 GAGGTCATGGAGTCTTATGAGGTTGAAATCAACGGAAAGGTCTTCCAAGTTAAAAGTATC 957
|||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||
Sbjct 866 GAGGTCATGGAGTCTTATGAGGTTGAAATCAATGGAAAGGTCTTCCAAGTCAAAAGTATC 925
Query 958 CGAAACTTGAATGGTCACAGCATTGGACCCTATCAGATACATGCTGGGAAATCTGTTCCT 1017
||||||||||||| || ||||||||||||||||||||||||||||||||||| ||||||
Sbjct 926 AGAAACTTGAATGGGCATAGCATTGGACCCTATCAGATACATGCTGGGAAATCCGTTCCT 985
Query 1018 ATCGTAAAAGGAGGCGAGCAGACAAAGATGGAAGAGGGCGAGTTTTATGCCATCGAAACA 1077
||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 986 ATCGTTAAGGGAGGCGAGCAGACAAAGATGGAAGAGGGCGAGTTTTATGCCATCGAAACA 1045
Query 1078 TTTGGATCAACCGGGAAAGGATATGTGAGAGAAGACCTAGAATGTAGCCATTACATGAAG 1137
|||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||
Sbjct 1046 TTTGGATCAACCGGGAAAGGATATGTGAGAGAAGACTTAGAATGTAGTCATTACATGAAG 1105
Query 1138 AACTTTGACGCT-GGCCACGTCCCCTTGAGGTTGCCTAGAGCAAAACAACTCCTTGCAAC 1196
|||||||| ||| ||| |||||||||||||||||||||||||||||||||| ||||| ||
Sbjct 1106 AACTTTGAAGCTAGGC-ACGTCCCCTTGAGGTTGCCTAGAGCAAAACAACTTCTTGCCAC 1164
Query 1197 CATTAACAAGAATTTCTCGACTCTCGCCTTCTGCAGACGTTATTTGGACCGCATTGGTGA 1256
||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||
Sbjct 1165 CATTAACAAGAATTTCTCGACGCTCGCCTTCTGCAGACGCTATTTGGACCGCATTGGTGA 1224
Query 1257 AACCAAATACTTAATGGCTCTAAAGAATCTTTGTGACTCTGGCATTGTTCAGCCGTATCC 1316
|||||||||||||||||||||||||||||| ||||| ||||||||||||||||| |||||
Sbjct 1225 AACCAAATACTTAATGGCTCTAAAGAATCTGTGTGATTCTGGCATTGTTCAGCCATATCC 1284
Query 1317 TCCTCTGTGTGATGTGAAAGGAAGCTATGTATCACAGTTTGAACACACCATTTTACTGCG 1376
|||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct 1285 TCCTCTGTGTGATGTGAAGGGAAGCTACGTATCACAGTTTGAACACACCATTTTACTGCG 1344
Query 1377 ACCTACTTGCAAAGAAGTTCTCTCCAAGGGAGACGACTACTGATTCAGATCCTCTGTTTT 1436
||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1345 ACCTACTTGCAAAGAGGTTCTTTCCAAGGGAGACGACTACTGATTCAGATCCTCTGTTTT 1404
Query 1437 -GCTCTGTTTACCTTTATTATCTCATACTGTTGTCGAGATTGTACACTTGCTTGTTTCTT 1495
||||||||| | || |||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1405 TGCTCTGTTTGC-TTAATTATCTCATACTGTTGTTGAGATTGTACACTTGCTTGTTTCTT 1463
Query 1496 TTGTCGTCGTTAACACAAGCTTTGAATCCTTTTATAAAAAGCTTCAGTGCCTCTGTTaaa 1555
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1464 TTGTCGTCGTTAACACAAGCTTTGAATCCTTTTATAAAAAGCTTCAATGCCTCTGTTAAA 1523
Query 1556 aaaaaa-CTATGTATTTGCCATGAACATGAATTTGCTCATCAATCTTACTAGAA 1608
|||||| ||||| ||||||| |||||||||||||||||||||||||||||||||
Sbjct 1524 AAAAAAACTATGAATTTGCCTTGAACATGAATTTGCTCATCAATCTTACTAGAA 1577
> Ahg483541 jgi|Araly1|483541|fgenesh2_kg.4__2601__AT2G44180.1
Length=1417
Score = 1293 bits (700), Expect = 0.0
Identities = 1094/1282 (85%), Gaps = 35/1282 (3%)
Strand=Plus/Plus
Query 160 GAGTCCTCTAATGGTAAAGAGGA-ACAATTGGAATCTGAGCTT-TCGAAGAAGCTTGAGA 217
|||||||||||||| ||||| || ||||| | ||||| ||| ||||||| |||||
Sbjct 13 GAGTCCTCTAATGGAAAAGA-GACTCAATTAGCTTCTGA-CTTAACGAAGAATCTTGATC 70
Query 218 TTGCAGAA--GATGG---TC-aagagga-g--aacgatggagaagaagga-agcaaagct 267
|||| || || || | || |||| | ||| | | |||||| ||| | ||||||
Sbjct 71 TTGCTCAAGTGAAGGAACACGAAAAGGATGATAACCAAGAAGAAGATGGACTG-AAAGCT 129
Query 268 gagacttcaacgaagaagaagaagaagaaaaataaaagcaagaagaagaagGAACTCCC- 326
||| ||||||||||||||||||||||||||| |||||||||||||||||| || ||||
Sbjct 130 GAGCCTTCAACGAAGAAGAAGAAGAAGAAAAGTAAAAGCAAGAAGAAGAA-GAGTTCCCT 188
Query 327 TCAACAGACTGATCCACCTTCAATTCCTG-TCGTTGAGCTCTTCCCATCAGGAGAGTTTC 385
||||||||||||||||||||||||||||| || ||||||||||||| || ||||| ||||
Sbjct 189 TCAACAGACTGATCCACCTTCAATTCCTGTTC-TTGAGCTCTTCCCTTCTGGAGATTTTC 247
Query 386 CTGAAGGTGAAATCCAAGAGTATAAGGATGATAATCTT-TGGAGAACAACATCTGAAGAG 444
||||||||||||||||| ||||||||||||||||| || |||||||||||||||||||||
Sbjct 248 CTGAAGGTGAAATCCAACAGTATAAGGATGATAAT-TTGTGGAGAACAACATCTGAAGAG 306
Query 445 AAGAGAGAGCTGGAGCGTTTTG-AAAAGCCAATATATAACTCTGTTCGCCGAGCTGCAGA 503
||||||||| ||||||| || ||||||| |||||||||||| |||||| ||| |||||
Sbjct 307 AAGAGAGAGATGGAGCG-GCTGCAAAAGCCGATATATAACTCTCTTCGCCAAGCAGCAGA 365
Query 504 AGTTCATCGCCAGGTTCGTAAATATGTCAGAAGCATAGTGAAGCCTGGAATGTTGATGAC 563
||||||||| || ||| | || ||| | ||||| ||| |||||||||||||||||||||
Sbjct 366 AGTTCATCGTCAAGTTAGGAAGTATATGAGAAGTATATTGAAGCCTGGAATGTTGATGAT 425
Query 564 TGATATATGTGAGACCCTAGAGAATACTGTTCGTAAGTTGATATCAGAGAATGGTCTTCA 623
|||| | ||||||||| ||||||| || ||||||||||||||||||||||||||||||||
Sbjct 426 TGATCTCTGTGAGACCTTAGAGAACACCGTTCGTAAGTTGATATCAGAGAATGGTCTTCA 485
Query 624 AGCTGGTATTGCATTCCCTACAGGATGCTCTTTGAATTGGGTCGCTGCTCATTGGACACC 683
||||||||| || || ||||||||||| ||| ||||| || |||||||||||||||||
Sbjct 486 AGCTGGTATCGCCTTTCCTACAGGATGTTCTCTGAATAATGTTGCTGCTCATTGGACACC 545
Query 684 AAACTCTGGAGATAAGACTGTACTTCAGTACGACGATGTTATGAAATTGGACTTTGGAAC 743
||||||||||||||||||||| |||||||| || ||||| ||||| || ||||||||
Sbjct 546 AAACTCTGGAGATAAGACTGTCCTTCAGTATGATGATGTGATGAAGCCAGATTTTGGAAC 605
Query 744 ACATATTGATGGGCATATTATTGACTGTGCATTTACAGTTGCCTTCAACCCTATGT-TCG 802
||||||||||||||||||| |||| | || ||||||||||| ||||| ||||||| | |
Sbjct 606 ACATATTGATGGGCATATTGTTGATTCCGCTTTTACAGTTGCATTCAATCCTATGTAT-G 664
Query 803 ATCCTCTCTTAGCAGCCTCTCGTGAAGCTACGTATACCGGTATCAAGGAAGCTGG-GATC 861
|||||||||||||||| || |||||||| || |||||||||||||||||||| || | |
Sbjct 665 ATCCTCTCTTAGCAGCTTCCCGTGAAGCAACATATACCGGTATCAAGGAAGCCGGTG-TA 723
Query 862 GATGTCCGTCTCTGTGATATCGGTGCTGCTATTCAGGAGGTCATGGAGTCTTATGAGGTT 921
||||| || ||||||||| | |||||||| ||||||||||||||||||||||||||||||
Sbjct 724 GATGTTCGGCTCTGTGATGTTGGTGCTGCAATTCAGGAGGTCATGGAGTCTTATGAGGTT 783
Query 922 GAAATCAACGGAAAGGTCTTCCAAGTTAAAAGTATCCGAAACTTGAATGGTCACAGCATT 981
|| ||||| ||||| |||| |||||| || |||||| ||||| ||||||| |||||||||
Sbjct 784 GATATCAATGGAAAAGTCTACCAAGTCAAGAGTATCAGAAACCTGAATGGGCACAGCATT 843
Query 982 GGACCCTATCAGATACATGCTGGGAAATCTGTTCCTA-TCGTAAAAGGAGGCGAGCAGAC 1040
|||| |||||||||||| || | ||||||||||||| | || | |||||||||||||||
Sbjct 844 GGACGCTATCAGATACACGCCGAAAAATCTGTTCCTAAT-GTTAGAGGAGGCGAGCAGAC 902
Query 1041 -AAAGATGGAAGAGGGCGAGTTTTATGCCATCGAAACATTTGGATCAACCGGGAAAGGAT 1099
||| ||||||||||| || || |||||||| ||||||||||||||||| ||||| ||||
Sbjct 903 GAAA-ATGGAAGAGGGTGAATTATATGCCATTGAAACATTTGGATCAACAGGGAAGGGAT 961
Query 1100 ATGTGAGAGAAGACCTAGAATGTAGCCATTACATGAAGAACTTTGACGCTGGC-CACGTC 1158
|||| ||||| ||| |||||||||||||||||||||| |||| ||| | ||| |||||
Sbjct 962 ATGTAAGAGAGGACTTAGAATGTAGCCATTACATGAAAAACTATGATG-TGGGTCACGTA 1020
Query 1159 CCCTTGAGGTTGCCTAGAGCAAAACAACTCCTTGCAACCATTAACAAGAATTTCTCGACT 1218
|| |||||||| || |||||||||||||||||||| || ||||||||||| ||||| |||
Sbjct 1021 CCTTTGAGGTTACCAAGAGCAAAACAACTCCTTGCCACTATTAACAAGAACTTCTCCACT 1080
Query 1219 CTCGCCTTCTGCAGACGTTATTTGGACCGCATTGGTGAAACCAAATACTTAATGGCTCTA 1278
|| |||||||||||||| |||||||||||| |||||||||| ||||| || |||||| ||
Sbjct 1081 CTAGCCTTCTGCAGACGCTATTTGGACCGCCTTGGTGAAACAAAATATTTGATGGCTTTA 1140
Query 1279 AAGAATCTTTGTGACTCTGGCATTGTTCAGCCGTATCCTCCTCTGTGTGATGTGAAAGGA 1338
|||||||||||||| ||||||||| || |||| | ||||| | |||||||||||||||
Sbjct 1141 AAGAATCTTTGTGATTCTGGCATTATTGAGCCATGCCCTCCAGTTTGTGATGTGAAAGGA 1200
Query 1339 AGCTATGTATCACAGTTTGAACACACCATTTTACTGCGACCTACTTGCAAAGA-AGTTCT 1397
|||||| | || |||||||| || || || || ||||||| ||||||||||| | || |
Sbjct 1201 AGCTATATTTCTCAGTTTGAGCATACAATCTTGTTGCGACCAACTTGCAAAGAGA-TTAT 1259
Query 1398 CTCCAAGGGAGACGACTACTGA 1419
||||| |||||||| || |||
Sbjct 1260 TTCCAAAGGAGACGATTATTGA 1281
> Ahg346227 jgi|Araly1|346227|fgenesh1_pg.C_scaffold_4002569
Length=1365
Score = 1216 bits (658), Expect = 0.0
Identities = 970/1121 (87%), Gaps = 20/1121 (2%)
Strand=Plus/Plus
Query 309 gaagaagaagGAACTCC-CTCAACAGACTGATCCACCTTCAATTCCTG-TCGTTGAGCTC 366
||||||||| ||| ||| ||||||||||||||||||||||||||||| || |||| |||
Sbjct 255 GAAGAAGAA-GAATTCCATTCAACAGACTGATCCACCTTCAATTCCTGTTC-TTGACCTC 312
Query 367 TTCCCATCAGGAGAGTTTCCTGAAGGTGAAATCCAAGAGTATAAGGATGATAATCTT-TG 425
|| || || ||||| |||||| |||||||||||||| | || |||||||||||| || ||
Sbjct 313 TTTCCTTCTGGAGAATTTCCTCAAGGTGAAATCCAACAATACAAGGATGATAAT-TTGTG 371
Query 426 GAGAACAACATCTGAAGAGAAGAGAGAGCTGGAGCGTTTTGAAAAGCCAATATATAACTC 485
|||||||||||| ||||||||||||||| ||||| | || ||||||| |||||||||||
Sbjct 372 GAGAACAACATCCGAAGAGAAGAGAGAGATGGAGAGGCTTCAAAAGCCGATATATAACTC 431
Query 486 TGTTCGCCGAGCTGCAGAAGTTCATCGCCAGGTTCGTAAATATGTCAGAAGCATAGTGAA 545
| |||||| ||| || ||||||||||| || ||| | || ||| | ||||||||| ||||
Sbjct 432 TCTTCGCCAAGCAGCGGAAGTTCATCGTCAAGTTAGGAAGTATATGAGAAGCATATTGAA 491
Query 546 GCCTGGAATGTTGATGACTGATATATGTGAGACCCTAGAGAATACTGTTCGTAAGTTGAT 605
|||||||||||||||| |||| | ||||||||| ||||||| |||||| ||||||||||
Sbjct 492 ACCTGGAATGTTGATGATTGATCTCTGTGAGACCTTAGAGAACACTGTTTGTAAGTTGAT 551
Query 606 ATCAGAGAATGGTCTTCAAGCTGGTATTGCATTCCCTACAGGATGCTCTTTGAATTGGGT 665
||||||||||||||||||||||||||| ||||| |||||||| || ||| ||||| ||
Sbjct 552 ATCAGAGAATGGTCTTCAAGCTGGTATCGCATTTCCTACAGGGTGTTCTCTGAATAACGT 611
Query 666 CGCTGCTCATTGGACACCAAACTCTGGAGATAAGACTGTACTTCAGTACGACGATGTTAT 725
|||||||||||||||||||||||||||||||||||||| |||||||| || ||||| ||
Sbjct 612 TGCTGCTCATTGGACACCAAACTCTGGAGATAAGACTGTCCTTCAGTATGATGATGTCAT 671
Query 726 GAAATTGGACTTTGGAACACATATTGATGGGCATATTATTGACTGTGCATTT-ACAGTTG 784
||| ||||| ||||||||||||||||||||||| ||| |||| | || ||| |||||||
Sbjct 672 GAAGTTGGATTTTGGAACACATATTGATGGGCACATTGTTGATTCCGC-TTTCACAGTTG 730
Query 785 CCTTCAACCCTATGTTCGATCCTCTCTTAGCAGCCTCTCGTGAAGCTACGTATACCGGTA 844
||||||| |||||||| |||||||| ||||||||||| |||||||| || ||||||||||
Sbjct 731 CCTTCAATCCTATGTTTGATCCTCTTTTAGCAGCCTCACGTGAAGCAACATATACCGGTA 790
Query 845 TCAAGGAAGCTGGGATCGATGTCCGTCTCTGTGATATCGGTGCTGCTATTCAGGAGGTCA 904
|||||||||||||| | |||||||||||||||||| | |||||||| |||||||||||||
Sbjct 791 TCAAGGAAGCTGGGGTAGATGTCCGTCTCTGTGATGTTGGTGCTGCAATTCAGGAGGTCA 850
Query 905 TGGAGTCTTATGAGGTTGAAATCAACGGAAA-GGTCTTCCAAGTTAAAAGTATCCGAAAC 963
||||||||||||||||| ||||||| ||||| || || |||||| ||||||||| |||||
Sbjct 851 TGGAGTCTTATGAGGTTAAAATCAATGGAAAAGG-CTACCAAGTCAAAAGTATCAGAAAC 909
Query 964 TTGAATGGTCACAGCATTGGACCCTATCAGATACATGCTGGGAAATCTGTTCCTA-TCGT 1022
||||||| ||||||||||||| |||||||||||| |||| ||||||||||||| | ||
Sbjct 910 CTGAATGGGCACAGCATTGGACGCTATCAGATACACGCTGAAAAATCTGTTCCTAAT-GT 968
Query 1023 AAAAGGAGGCGAGCAGAC-AAAGATGGAAGAGGGCGAGTTTTATGCCATCGAAACATTTG 1081
| ||||||||||||||| ||| ||||||||||| || || |||||||| ||||| ||||
Sbjct 969 TAGAGGAGGCGAGCAGACGAAA-ATGGAAGAGGGTGAATTATATGCCATTGAAACTTTTG 1027
Query 1082 GATCAACCGGGAAAGGATATGTGAGAGAAGACCTAGAATGTAGCCATTACATGAAGAACT 1141
|||||||||||||||||||||||||||| ||| |||||||||||||||||||||| ||||
Sbjct 1028 GATCAACCGGGAAAGGATATGTGAGAGAGGACTTAGAATGTAGCCATTACATGAAAAACT 1087
Query 1142 TTGACGCTGGC-CACGTCCCCTTGAGGTTGCCTAGAGCAAAACAACTCCTTGCAACCATT 1200
|| | ||| |||||||| |||||||| || | |||||||||||||||||| ||||||
Sbjct 1088 ACGATG-TGGGACACGTCCCTTTGAGGTTACCAAAAGCAAAACAACTCCTTGCCACCATT 1146
Query 1201 AACAAGAATTTCTCGACTCTCGCCTTCTGCAGACGTTATTTGGACCGCATTGGTGAAACC 1260
|||||||| ||||| ||||| || |||||| |||| |||||||||||| ||||||||||
Sbjct 1147 AACAAGAACTTCTCCACTCTAGCTTTCTGCGGACGCTATTTGGACCGCCTTGGTGAAACG 1206
Query 1261 AAATACTTAATGGCTCTAAAGAATCTTTGTGACTCTGGCATTGTTCAGCCGTATCC-TCC 1319
|||||||| |||||| |||||||||||||||| |||||||| || |||| | || |||
Sbjct 1207 AAATACTTGATGGCTTTAAAGAATCTTTGTGATTCTGGCATAATTGAGCCATG-CCGTCC 1265
Query 1320 TCTGTGTGATGTGAAAGGAAGCTATGTATCACAGTTTGAACACACCATTTTACTGCGACC 1379
|||||||||| |||||||||||||| || |||||||| || || ||||| |||| ||
Sbjct 1266 AGTGTGTGATGTAAAAGGAAGCTATGTTTCTCAGTTTGAGCATACGATTTTGTTGCGGCC 1325
Query 1380 TACTTGCAAAGA-AGTTCTCTCCAAGGGAGACGACTACTGA 1419
||||||||||| | || | ||||| |||||||| || |||
Sbjct 1326 AACTTGCAAAGAGA-TTATTTCCAAAGGAGACGATTATTGA 1365
> Ahg924340 jgi|Araly1|924340|scaffold_105621.1
Length=428
Score = 468 bits (253), Expect = 6e-131
Identities = 293/312 (94%), Gaps = 4/312 (1%)
Strand=Plus/Plus
Query 81 GGTGAAAATCG-ATTTGAAGATGGCGAGCGAAAGTCCTGATGTTGCTGTTGTAGCTCCGG 139
||||| ||||| |||||||||||||||||||||| |||||||||| |||||||||||| |
Sbjct 1 GGTGAGAATCGAATTTGAAGATGGCGAGCGAAAGCCCTGATGTTGTTGTTGTAGCTCCCG 60
Query 140 TGGTGGAGAATGGCGGCGCTGAGTCCTCTAATGGTAAAGAGGAACAATTGGAATCTGAGC 199
|||||||||||||||||||||| ||||||||||| ||||| |||||||||||||||||||
Sbjct 61 TGGTGGAGAATGGCGGCGCTGAATCCTCTAATGGAAAAGATGAACAATTGGAATCTGAGC 120
Query 200 TTTCGAAGAAGCTTGAGATTGCAGAAGATGGTCaagaggagaacgatggagaagaaggaa 259
|||||||||||||||||||||||||||||||| ||||||| ||||||| ||| |||||||
Sbjct 121 TTTCGAAGAAGCTTGAGATTGCAGAAGATGGTAAAGAGGACAACGATGAAGATGAAGGAA 180
Query 260 gcaaagctgagacttcaacgaagaagaagaagaagaaaaataaaagcaagaagaagaagG 319
|||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 181 GCAAAGGTGAGACTTCAAC---GAAGAAGAAGAAGAAAAATAAAAGCAAGAAGAAGAAGG 237
Query 320 AACTCCCTCAACAGACTGATCCACCTTCAATTCCTGTCGTTGAGCTCTTCCCATCAGGAG 379
||||||||||||||||| |||||||||| |||||||||||||||||||||||||| ||||
Sbjct 238 AACTCCCTCAACAGACTAATCCACCTTCGATTCCTGTCGTTGAGCTCTTCCCATCTGGAG 297
Query 380 AGTTTCCTGAAG 391
||||||||||||
Sbjct 298 AGTTTCCTGAAG 309
Score = 139 bits (75), Expect = 6e-32
Identities = 81/84 (96%), Gaps = 0/84 (0%)
Strand=Plus/Plus
Query 437 CTGAAGAGAAGAGAGAGCTGGAGCGTTTTGAAAAGCCAATATATAACTCTGTTCGCCGAG 496
||||||||||||||||| |||||||||| |||||||||||||||||||||||||||| ||
Sbjct 304 CTGAAGAGAAGAGAGAGTTGGAGCGTTTGGAAAAGCCAATATATAACTCTGTTCGCCAAG 363
Query 497 CTGCAGAAGTTCATCGCCAGGTTC 520
||||||||||||||||||||||||
Sbjct 364 CTGCAGAAGTTCATCGCCAGGTTC 387
> Ahg922978 jgi|Araly1|922978|scaffold_104259.1
Length=471
Score = 254 bits (137), Expect = 2e-66
Identities = 203/234 (87%), Gaps = 8/234 (3%)
Strand=Plus/Plus
Query 309 gaagaagaag-GAACTCCCTCAACAGACTGATCCACCTTCAATTCCTG-TCGTTGAGCTC 366
|||||||||| | | ||| ||||||||||||||| ||||||||||||| || ||||||||
Sbjct 32 GAAGAAGAAGAGTA-TCCTTCAACAGACTGATCCTCCTTCAATTCCTGTTC-TTGAGCTC 89
Query 367 TTCCCATCAGGAGAGTTTCCTGAAGGTGAAATCCAAGAGTATAAGGATGATAATCTT-TG 425
||||| || ||||| |||||||||| |||||||||| |||| |||||||||||| || ||
Sbjct 90 TTCCCTTCTGGAGATTTTCCTGAAGCTGAAATCCAACAGTACAAGGATGATAAT-TTGTG 148
Query 426 GAGAACAACATCTGAAGAGAAGAGAGAGCTGGAGCGTTTTG-AAAAGCCAATATATAACT 484
|||||||||||||||||||||||||||| ||||||| | | ||||||| ||||||||||
Sbjct 149 GAGAACAACATCTGAAGAGAAGAGAGAGATGGAGCGGCT-GCAAAAGCCGATATATAACT 207
Query 485 CTGTTCGCCGAGCTGCAGAAGTTCATCGCCAGGTTCGTAAATATGTCAGAAGCA 538
|| |||||| ||| |||||||||||||| || ||| | || ||| | |||||||
Sbjct 208 CTCTTCGCCAAGCAGCAGAAGTTCATCGTCAAGTTAGGAAGTATATGAGAAGCA 261
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60753940775
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5