BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G60080.1 Length=1488 Score E Sequences producing significant alignments: (Bits) Value Ahg939042 jgi|Araly1|939042|scaffold_503233.1 1417 0.0 > Ahg939042 jgi|Araly1|939042|scaffold_503233.1 Length=950 Score = 1417 bits (767), Expect = 0.0 Identities = 890/947 (94%), Gaps = 18/947 (2%) Strand=Plus/Plus Query 308 accaccaccaccacttctcaatgtcgtcttccaccaccacaacaaccaccgtccacGGCG 367 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 ACCACAACCACCACTTCTCAATGTCGTCTTCCACCACCACAACAACCACCGTCCACGGCG 60 Query 368 AGCCTGAACGACGAACTTACTGGTGTCATGAATGCGATATGAGTTTAtccctcctctcct 427 ||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||| Sbjct 61 AGCCTGAACGACGAACTTACTGGTGTCATGAATGCGATATGAGTTTA----TCC-CTCCT 115 Query 428 cctccgattccgattccgattcctctcctcTGTTATGTCCCCAATGCCGTGTCGATTTCC 487 |||| ||| |||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 116 -CTCC---TCC---TCCGATTCCTCTCCTCTGTTATGTCCCCAATGCCGTCTCGATTTCC 168 Query 488 TCGAACGTATGGATCACGATTCTTCTTCTTCTAATCTCTTTGACGTTACCATCGGTGATT 547 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 169 TCGAACGTATGGATCACGATTCTTCTTCTTCTAATCTCTTTGACGTTACCATCGGTGATT 228 Query 548 TTGAAGAACAAGACGGAGAAAACGATGATGAAGACGACGAAGAAGATTGGTGTTTCGTTG 607 | |||||| | || |||||||||||||| |||||||| |||||||||||||||||||||| Sbjct 229 TCGAAGAAGATGATGGAGAAAACGATGACGAAGACGATGAAGAAGATTGGTGTTTCGTTG 288 Query 608 ATCCAGCTGTTAATTCCGATGATAATTTCCTCCTCGATAGTCCTTACCTTCACCGTCttc 667 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 289 ATCCAGCGGTTAATTCCGATGATAATTTCCTCCTCGATAGTCCTTACCTTCACCGTCTTC 348 Query 668 ttcgtcatctcgcttccgataattcaggatcgtcttcttcttcctcgtcttcatcttctt 727 |||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 349 TTCGCCATCTCGCTTCCGATAATTCAGGATCGTCTTCTTCTTCCTCCTCTTCATCTTCTT 408 Query 728 cttcGTTATTGAAATCTTCAGATATCGATTCGATCCCCACGATTCAGATCTCGTCTTCTT 787 ||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 409 CTTCGTTGTTGAAATCTTCAGATATCGATTCGATTCCCACGATTCAGATCTCGTCTTCTA 468 Query 788 TGCTCTGTTCCACCGATGATTCAGATCCAGATTCCGTTTTACTCTGCGCCGTTTGCAAAG 847 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 469 TGCTCTGTTCCACCGATGATTCAGATCCAGATTCCGTTTTACTCTGCGCCGTATGCAAAG 528 Query 848 AGGATTTCATCATCGGAGAATCTGCTCGGAGATTACCGTGTAGTCATATATACCACTCCG 907 |||||||| || ||||||||||||||||||||||||| ||||| |||||||||||||||| Sbjct 529 AGGATTTCGTCGTCGGAGAATCTGCTCGGAGATTACCTTGTAGCCATATATACCACTCCG 588 Query 908 ATTGCATCGTCCCTTGGCTCTCGGATCATAACTCGTGTCCGCTTTGTAGATTTGAGCTCC 967 |||||||||| |||||||| |||||||| ||||||||||||||||| |||||||||| | Sbjct 589 ATTGCATCGTTCCTTGGCTATCGGATCACAACTCGTGTCCGCTTTGCCGATTTGAGCTAC 648 Query 968 CTACGACGGCGAAGGTGGGAATCGGTGGCTCAGAGGCTGAGATGAGAATCAGATTATCGG 1027 |||||||||||||||||||||| ||||| ||||||||||||||||||||| ||||||||| Sbjct 649 CTACGACGGCGAAGGTGGGAATTGGTGGTTCAGAGGCTGAGATGAGAATCCGATTATCGG 708 Query 1028 ATCTGGCTACGATTGCTGCAGATGGTGATGATGTGGAAGATGATTGGCTTGGAATCAGAA 1087 |||||||||||||||||||||| || |||||||||||||| |||||||||||||| |||| Sbjct 709 ATCTGGCTACGATTGCTGCAGACGGAGATGATGTGGAAGACGATTGGCTTGGAATAAGAA 768 Query 1088 ACGCGTTGAGAAGACTGGCTCGTCGTCATGAGCAGATGAGATTGGGAGTGGGAGAGATGG 1147 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 769 ACGCGTTGAGAAGACTGGCTCGTCGTCATGAGCAGATGAGATTGGGAGTGGGAGAGATGG 828 Query 1148 AGAGGAATTTGGCTAGGACTGTTTCAGGTCTTGGAATTGGTATGAGAAGAAGAGAAGAGA 1207 |||||||||||||| |||||||||||||||||||||||||| |||| ||| | || |||| Sbjct 829 AGAGGAATTTGGCTCGGACTGTTTCAGGTCTTGGAATTGGTTTGAGGAGA-G-GA-GAGA 885 Query 1208 TTGAAGCAGACAGAAG---CAACGTCACAACGACGCCTTTGTAAGAA 1251 ||||| |||| ||||| ||||| |||||||||||| ||||||||| Sbjct 886 TTGAATCAGAGAGAAGAAGCAACGCCACAACGACGCCGTTGTAAGAA 932 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 55687938190 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5