BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G60300.2
Length=1389
Score E
Sequences producing significant alignments: (Bits) Value
Ahg898991 jgi|Araly1|898991|Al_scaffold_0005_2957 636 0.0
> Ahg898991 jgi|Araly1|898991|Al_scaffold_0005_2957
Length=1008
Score = 636 bits (344), Expect = 0.0
Identities = 398/425 (94%), Gaps = 0/425 (0%)
Strand=Plus/Plus
Query 298 TTTGTGGAAGCCGTTGTTAGATTCCAAGCAGGTTCTAAGTATCCAGATGAACCACCTCGG 357
||||||||||| ||||| ||| ||||| || ||||||||||||||||||||||||||||
Sbjct 139 TTTGTGGAAGCGGTTGTGAGAATCCAATCAAGTTCTAAGTATCCAGATGAACCACCTCGA 198
Query 358 ATTAGTCTGATTGAATCCAAGGGTCTTGACGAGCAAAGGCAAAAGCTTTTGATTGGCATA 417
|||||||||||||||||||||||||| || |||||||||||||||| ||||| ||||||
Sbjct 199 ATTAGTCTGATTGAATCCAAGGGTCTCGATGAGCAAAGGCAAAAGCATTTGACTGGCATT 258
Query 418 GTGCAAGAGAAAGCTTCTCAACTATCATCTTCTTTAATGCTTGTAGAACTTTGTGAGGAA 477
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 259 GTGCAAGAGAAAGCTTCTCAACTATCATCTTCTTTAATGCTTGTAGAACTTTGTGAGGAA 318
Query 478 GCAGTGGAGAGGCTCACAATTATGAATCACCCGGAGGGAGATTGTCCACTGTGTTTGTAT 537
||||| |||||||||||||| ||||||||||| || ||||||||||||||||||||||||
Sbjct 319 GCAGTTGAGAGGCTCACAATCATGAATCACCCAGATGGAGATTGTCCACTGTGTTTGTAT 378
Query 538 CCGTTATTCCCTGAGGATGGCGGGAGTAAACAAATGCCATTTATGAAGCTGATGTCTTGT 597
||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||
Sbjct 379 CCGTTATTCCCTGAGGAAGACGGGAGTAAACAAATGCCATTTATGAAGCTGATGTCTTGT 438
Query 598 TTTCATTGTTTCCACTGTGAGTGCATCATTAGGTGGTGGAATTGGCTTCATGCACAGGAA 657
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 439 TTCCATTGTTTCCACTGTGAGTGCATCATTAGGTGGTGGAATTGGCTTCATGCACAAAAA 498
Query 658 GAGGCTGATTCGAAATCTGGTGACACTTTACATATGCGTAGAGGATCAACTGCTCGAGAA 717
|| ||||||||||| ||||||||| ||| |||||||||||||||||||| | ||||||||
Sbjct 499 GATGCTGATTCGAATTCTGGTGACTCTTCACATATGCGTAGAGGATCAAGTACTCGAGAA 558
Query 718 GGTAA 722
| |||
Sbjct 559 GATAA 563
Score = 582 bits (315), Expect = 2e-165
Identities = 391/426 (92%), Gaps = 12/426 (3%)
Strand=Plus/Plus
Query 835 GACTCTAGTTTAATACCAGGCAAGGACCAAGACCCGCTGCTCCAGTCAGATTCAGAGAAC 894
|||||| ||||||||| ||| ||||||||||||||||||||||||||||||||||||||
Sbjct 595 GACTCTGGTTTAATACAAGGTGAGGACCAAGACCCGCTGCTCCAGTCAGATTCAGAGAAC 654
Query 895 ATAAGAAGAGAGCGGTTTGAGTCTATTCTAAAGACGCAGGAAGAAAAGGGTGGTTTGGTT 954
||||||||||||||||||||| |||||||||||||||||||||||| ||| |||||||||
Sbjct 655 ATAAGAAGAGAGCGGTTTGAGGCTATTCTAAAGACGCAGGAAGAAATGGGCGGTTTGGTT 714
Query 955 CAACCGAAGAAAAACATATCGGTGGTGCCCGGTATGTATCTTCCTCCACCAGCTCATGCA 1014
||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||
Sbjct 715 CAACCGAAGAAAAACATATCGGTTGTGCCCGGTATGTATCTTCCTCCACCAGCTCCTGCA 774
Query 1015 TCAACGTCACgaaacgaagaagaagaagctggtgaaagccaagaacaaggagaagaggaa 1074
||| |||||| |||||||||||||||||||||| |||||||||||||||||||||| |||
Sbjct 775 TCATCGTCACCAAACGAAGAAGAAGAAGCTGGTCAAAGCCAAGAACAAGGAGAAGAAGAA 834
Query 1075 cccaaagaagctgaaTCAGAGACAAACTCTAGCAGCTCCACCAACAGGAGAGGTCGAGGG 1134
||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||
Sbjct 835 CCCAAAGAAGCTGAATCAGAGACAAGCTCTAGCAGCTCCAGCAACAGGAGAGGTCGAGGG 894
Query 1135 AGATGGAGAGGCAGAGGCAGAAGCAGAGGCCGGGGACCTACTGTCAATGAAAGGAAGCCG 1194
||| || ||||||| | |||||||||||| || ||||||| ||||||||| |
Sbjct 895 AGA-GG-----CAGAGGC-----C-GAGGCCGGGGACATAGTGTCAATCAAAGGAAGCAG 942
Query 1195 AATTCGCAAGATCCAAGAAAACCGACGAGACAATGGGTGCAGAGAGCCAGAGAAGGAGAC 1254
||||||||||||||||||||||||| ||| |||||||||||||||||||||||| | |||
Sbjct 943 AATTCGCAAGATCCAAGAAAACCGATGAGGCAATGGGTGCAGAGAGCCAGAGAAAGTGAC 1002
Query 1255 AAATAA 1260
||||||
Sbjct 1003 AAATAA 1008
Score = 222 bits (120), Expect = 5e-57
Identities = 135/142 (95%), Gaps = 1/142 (1%)
Strand=Plus/Plus
Query 109 ATGACGGAGGAAGAGGTAGCTATGGAAGTGGAAGCTCTAGAAGCAGTTTACAGCGAAGAC 168
|||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||
Sbjct 1 ATGACGGAGGAAGAGGTAGCCATGGAAGTGGAAGCTCTAGAAGCAGTTTACGGCGAAGAC 60
Query 169 TGCGTTATACTGGATTCGTATCCTCCTCATCTTCACCTCCATATCAAGCCCCGTACCGCC 228
||||||||| ||||||| |||||||||| |||||||||||||||||||||||||||||||
Sbjct 61 TGCGTTATATTGGATTCATATCCTCCTCGTCTTCACCTCCATATCAAGCCCCGTACCGCC 120
Query 229 GAAATCTCTTCTCAGCAGGttt 250
|| ||||||||||||||| |||
Sbjct 121 GAGATCTCTTCTCAGCAG-TTT 141
Score = 69.4 bits (37), Expect = 6e-11
Identities = 37/37 (100%), Gaps = 0/37 (0%)
Strand=Plus/Plus
Query 735 AGATAAAAGCTTGGGAAACTGTCCAGTGTGCCGCAAA 771
|||||||||||||||||||||||||||||||||||||
Sbjct 558 AGATAAAAGCTTGGGAAACTGTCCAGTGTGCCGCAAA 594
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51917003935
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5