BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G60320.1
Length=2721
Score E
Sequences producing significant alignments: (Bits) Value
Ahg486504 jgi|Araly1|486504|fgenesh2_kg.5__2496__AT3G60320.1 4191 0.0
Ahg902514 jgi|Araly1|902514|Al_scaffold_0004_3164 1759 0.0
Ahg470059 jgi|Araly1|470059|fgenesh2_kg.1__13__AT1G02110.1 143 7e-33
> Ahg486504 jgi|Araly1|486504|fgenesh2_kg.5__2496__AT3G60320.1
Length=2691
Score = 4191 bits (2269), Expect = 0.0
Identities = 2567/2710 (95%), Gaps = 24/2710 (1%)
Strand=Plus/Plus
Query 1 AGTATAGTGTAGTGGGAAAGTCTGGAAACAGCTGTATCTAACTTTTTCCCTTTTCTCTAT 60
||||||||||||||||||| ||||| |||||| ||||||||||||||| ||||||||||
Sbjct 1 AGTATAGTGTAGTGGGAAACTCTGGTAACAGC--TATCTAACTTTTTCCTTTTTCTCTAT 58
Query 61 GATTCTGTTGTGAATAATGCAGAGCCGCCGTGAGCTCAGGCGCCACCGTAACGAAGAACA 120
||||||||| |||||||||||||| | ||||||||||||||||||||||||||||||| |
Sbjct 59 GATTCTGTTATGAATAATGCAGAGTCACCGTGAGCTCAGGCGCCACCGTAACGAAGAAGA 118
Query 121 AACCTGAAGGAGAAAAATAAGCCATGGGATGTGCGGCGTCCAAGCTCGATAACGAAGATG 180
||||||||| || || |||||||||||||||| ||||| |||||||||||||||||||
Sbjct 119 AACCTGAAGTAG---AAGAAGCCATGGGATGTGCAGCGTCGAAGCTCGATAACGAAGATG 175
Query 181 CTGTACGGCGTTGTAAGGATCGCCGCCGTCTGATGAAAGAAGCTGTCTACGCTCGTCATC 240
|||||||||| |||||||||||||||||||||||||||||||||||||| ||||| ||||
Sbjct 176 CTGTACGGCGGTGTAAGGATCGCCGCCGTCTGATGAAAGAAGCTGTCTATGCTCGCCATC 235
Query 241 ATCTCGCCGCCGCTCACGCCGATTACTGCCGATCGCTTCGTATCACTGGATCTGCTCTTT 300
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 236 ATCTCGCCGCCGCTCACGCCGATTACTGCCGATCGCTTCGTCTCACTGGATCTGCTCTTT 295
Query 301 CCTCATTCGCCTCCGGTGAGCCTCTCTCTGTATCTGATCAAACTCCGGCTGTTTTCCTCC 360
|||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||
Sbjct 296 CCTCATTCGCCTCCGGTGAGCCTCTCTCTGTATCGGATCAAACTCCGGCAGTTTTCCTCC 355
Query 361 ATACTCCCCCTCCTCCGCTTTCTGAACAATCTCCGGCTAAATTTGTCCCTCCACGTTTTT 420
|| |||| ||||||||||||||||||||||| |||||| ||||| ||||||||||||||
Sbjct 356 ATCCTCCTCCTCCTCCGCTTTCTGAACAATCGCCGGCTCAATTTATCCCTCCACGTTTTC 415
Query 421 CGCCGTCGCCTGCTCCTTCTTCTGTTTATCCTCCTTCGACGTCTCCTTCCGTCGCCAGTT 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 416 CGCCGTCGCCTGCTCCTTCTTCTGTTTATCCTCCTTCGACGTCTCCTTCCGTCGCTAGTT 475
Query 481 CTAAGCAGCCTTCAGTCATGTCCACCTCTTCCAATCGACGCCGGAAACAGCAACCAAAAC 540
|| | | |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 476 CT-A--A------AGTCATGTCCACCTCTTCCAATCGACGCCGGAAACAGCAACCAAAAC 526
Query 541 CTAGACTGCCTCATATTCTCTCGGAGTCAAGTCCTTCTTCTTCTCCGAGAAGTGAGAGAT 600
||| ||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||
Sbjct 527 CTAAACTGCCTCATATTCTCTCGGAGTCAAGTCCTTCGTCTTCTCCGAGGAGTGAGAGAT 586
Query 601 CCAATTTCATGCCCAATTTGTATCCCAGTGCTTATCAGAACTCTACTTACTCCGCTACTC 660
||||||||||||| ||||| |||||| |||||||||||||||||||||||||||||||||
Sbjct 587 CCAATTTCATGCCGAATTTTTATCCCGGTGCTTATCAGAACTCTACTTACTCCGCTACTC 646
Query 661 CTTCTCATGCCTCCTCCGTCTGGAACTGGGAGAATTTCTACCCTCCTTCTCCTCCCGATT 720
|||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 647 CTTCCCATGCCTCCTCCGTCTGGAACTGGGAAAATTTCTACCCTCCTTCTCCTCCCGATT 706
Query 721 CCGAATTCTTCAACAGGAAGGCTCAAGAGAAGAAACATAACTCCGATAATCGATTCAACG 780
||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||
Sbjct 707 CCGAATTCTTCAACAGGAAGGCTCAAGAGAAGAAACAAAACTCCGATAATCGCTTCAACG 766
Query 781 ACGAGGATACGGAAACAGTGAGGTCAGAGTATGATTTCTTCGACACGAGGAAGCAAAAGC 840
| |||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||
Sbjct 767 ATGAGGATACGGAAACAGAGAGGTCAGAGTATGATTTCTTCGACACAAGGAAGCAAAAGA 826
Query 841 AGAAGCAGTTCGAATCAATGAGAAAT-CAGGTGGAGGAAGAGACGGAGACGGAGAGAGAG 899
|||||||||||||||||||||| ||| | ||||||||| |||||||||||||||||||||
Sbjct 827 AGAAGCAGTTCGAATCAATGAGCAATGC-GGTGGAGGAGGAGACGGAGACGGAGAGAGAG 885
Query 900 GAAGTACAGTGTAGTGAATGGGAGGATCACGATCATTACAGCACCACGAGCTCCTCGGAC 959
|||||||||||||| ||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct 886 GAAGTACAGTGTAGCGAATGGGAGGATCACGATCATTACAGCACGACGAGTTCCTCGGAC 945
Query 960 GCAGCGGAGGAAGAGGAAG-A-A-GATGATGATAGAGAATCAATTTCCGAGGTCGGGACA 1016
|| |||||||||||||||| | | |||||||||||||| ||| |||||||| ||||||||
Sbjct 946 GCTGCGGAGGAAGAGGAAGAAGATGATGATGATAGAGAGTCAGTTTCCGAGATCGGGACA 1005
Query 1017 CGCTCCGAGTTTGGATCTACGGTGAGAAGTAATTCGATGAGACGGCATCATCAACAACCT 1076
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||
Sbjct 1006 CGCTCCGAGTTTGGATCTACGGTGAGAAGTAACTCGATGAGACGGCATCATCAACAATCT 1065
Query 1077 TCACCAATGCCGCAAGTATACGGCGGCGCTGAACAAAGTAAATATGATAAAGCAGATGAT 1136
|||||||||||||||||||||||| ||||||||||| |||||||||| |||| |||||||
Sbjct 1066 TCACCAATGCCGCAAGTATACGGCAGCGCTGAACAAGGTAAATATGACAAAGTAGATGAT 1125
Query 1137 GCTACGATATCTTCTGGTAGCTATAGAGGCGGAGGAGATATCGCTGACATGAAGATGGTA 1196
|| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1126 GCGACGATATCTTCTGGTAGCTATAGAGGCGGAGGAGAGATCGCTGACATGAAGATGGTG 1185
Query 1197 GTTAGGCATAGGGATTTGAAAGAAATCATCGATGCCATTAAGGAAAATTTCGATAAGGCT 1256
||||||||||||||||||||||||||| | ||||| |||||||| ||||||||||||||
Sbjct 1186 GTTAGGCATAGGGATTTGAAAGAAATCGTTGATGCGATTAAGGAGAATTTCGATAAGGCG 1245
Query 1257 GCTGCCTCAGGG-GAGCAAGTCTCTCAGATGCTCGAGCTTGGCAGAGCTGAGCTCGATCG 1315
|| ||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1246 GCCGCCTC-GGGCGAGCAAGTCTCTCAGATGCTCGAGCTTGGCAGAGCTGAGCTCGATCG 1304
Query 1316 TAGTTTCAGCCAATTGAAGAAAACGGTGATTCATTCGAGTAGTTTATTAAGCAACTTGAG 1375
||||||||||| ||||||||||||||||| ||||||||||| |||| |||||| ||||
Sbjct 1305 CAGTTTCAGCCAGTTGAAGAAAACGGTGATACATTCGAGTAGCATATTGAGCAACCTGAG 1364
Query 1376 CTCGACATGGACCTCGAAGCCGCCATTGGCAGTCAAGTATAGGATAGACACGACTGCGCT 1435
||| ||||||||||||||||||||||||||||||||||| ||| | ||||||||||||||
Sbjct 1365 CTCTACATGGACCTCGAAGCCGCCATTGGCAGTCAAGTACAGGCTGGACACGACTGCGCT 1424
Query 1436 GGATCAACCGAACAGTTCGAAGAGCCTTTGTTCCACTCTTGACCGTCTCTTGGCATGGGA 1495
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1425 GGATCAACCGAACAGTTCGAAGAGCCTTTGTTCCACTCTTGACCGTCTCTTGGCATGGGA 1484
Query 1496 GAAGAAGCTTTATGAAGAAATTAAGGCTAGAGAAGGTTTCAAGATTGAGCATGAGAAGAA 1555
||| |||||||||||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct 1485 GAAAAAGCTTTATGAAGAAATTAAGGCTAGAGAAGGCTTGAAGATTGAGCATGAGAAGAA 1544
Query 1556 GTTATCACAGCTTCAAAGCCAAGAATATAAAGGGGAGGATGAAGCTAAGTTAGACAAGAC 1615
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1545 GTTATCACAGCTTCAAAGCCAAGAATATAAAGGGGAGGATGAAGCTAAGTTAGACAAGAC 1604
Query 1616 AAAGGCCTCTATAACGAGGTTACAGTCACTGATCATTGTTACTTCTCAAGCTGTTACTAC 1675
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1605 AAAGGCCTCTATAACGAGGTTACAGTCACTGATCATTGTTACTTCTCAAGCTGTTACAAC 1664
Query 1676 CACATCTACTGCCATCATCCGTCTTCGTGATACTGACCTTGTTCCACAACTCGTTGAGCT 1735
||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1665 CACATCTACTGCCATAATCCGTCTTCGTGATACCGACCTTGTTCCACAACTCGTTGAGCT 1724
Query 1736 CTGTCATGGCTTTATGTACATGTGGAAATCTATGCATCAATACCATGAGACTCAGAACAG 1795
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1725 CTGTCATGGCTTTATGTACATGTGGAAATCTATGCATCAATACCATGAGACTCAGAACAG 1784
Query 1796 CATCGTGGAGCAAGTCCGGGGGCTCATTAACAGATCGGGCAAAGGCGAATCAACATCTGA 1855
||||||||||||||| |||||||||||||||||||||||||||||||||||||| || ||
Sbjct 1785 CATCGTGGAGCAAGTTCGGGGGCTCATTAACAGATCGGGCAAAGGCGAATCAACCTCCGA 1844
Query 1856 GCTACACCGACAAGCTACACGTGACTTGGAATCAGCTGTCTCTTCTTGGCACTCCAGTTT 1915
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1845 GCTACACCGACAAGCAACACGTGACTTGGAATCAGCTGTCTCTTCTTGGCACTCCAGTTT 1904
Query 1916 CAGTAGTTTGATTAAATTCCAACGTGACTTCATACACTCAGTTCACGCCTGGTTCAAGCT 1975
|||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1905 CAGTCGTCTGATTAAATTCCAACGTGACTTCATACACTCAGTTCACGCCTGGTTCAAGCT 1964
Query 1976 GACCCTTCTTCCGGTTTGCCAAGAAGACGCCGCCAATCATCACAAAGAGCCGCTCGATGC 2035
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1965 AACCCTTCTTCCGGTTTGCCAAGAAGACGCCGCCAATCATCATAAAGAGCCGCTCGATGC 2024
Query 2036 TTACGCCTTCTGCGATGAGTGGAAACTCGCTCTAGATCGTATTCCCGATACAGTTGCATC 2095
|||||||||||||||||||||||||||||| ||||| ||| ||||||||||||| |||||
Sbjct 2025 TTACGCCTTCTGCGATGAGTGGAAACTCGCGCTAGACCGTGTTCCCGATACAGTCGCATC 2084
Query 2096 TGAGGCAATCAAGAGCTTCATCAACGTTGTACACGTGATATCCGCAAAACAAGCCGATGA 2155
|| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 2085 CGAAGCAATCAAGAGCTTCATCAACGTTGTACACGTGATATCCGCGAAACAAGCCGATGA 2144
Query 2156 ACACAAGATAAAGAAAAGAACAGAATCAGCATCAAAAGAGCTTGAGAAGAAGGCTTCGTC 2215
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 2145 ACACAAGATAAAGAAAAGAACAGAAACAGCATCAAAAGAGCTTGAGAAGAAGGCTTCGTC 2204
Query 2216 GGTTAGAAACCTAGAGAGAAAATACTACCAGTCATACTCAATGGTTGGTGTCGGTTTACC 2275
| |||||||||||||||||||||||||||||||||||||| |||||||| | ||||||||
Sbjct 2205 GCTTAGAAACCTAGAGAGAAAATACTACCAGTCATACTCAGTGGTTGGTTTAGGTTTACC 2264
Query 2276 AGAGTCAGGACCCGATAACCAACACATGTTAGACGCTCGAGACCCGTTAAGCGATAAAAA 2335
||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct 2265 AGAGTCAGGACCCGATAACCAGCACATGTTAGATGCTCGAGACCCGTTAAGCGATAAAAA 2324
Query 2336 GTCAGAGCTTGCGGTTTGCCAAAGGAGAGTTGAGGAAGAGATGGTGAAATACTCAAAGGC 2395
|||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||
Sbjct 2325 GTCAGAGCTTGCGGTTTGCCAAAGCAGAGTAGAGGAAGAGATGGTGAAATACTCAAAGGC 2384
Query 2396 AATAGAAGTGACAAGAGCCATGACTTTGAATAATCTGCAGACAGGGTTGCCTGGTGTGTT 2455
||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||
Sbjct 2385 AATAGAAGTGACAAGGGCCATGACTTTGAATAATTTGCAGACAGGGTTGCCTGGTGTGTT 2444
Query 2456 CCAATCTTTAACAAGTTTCTCTGCTTTGTTCATGGAGTCTCTTCAAACGGTATGCACTCG 2515
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2445 CCAATCTTTAACAAGCTTCTCTGCTTTGTTCATGGAGTCTCTTCAAACGGTATGCACTCG 2504
Query 2516 CTCATACTCTATCAAATAGGACATtatatattatatatatatatatatTGATATGCTTAC 2575
||||||||||||||||||||||||||||| | ||||| | ||||| |||||||| |||||
Sbjct 2505 CTCATACTCTATCAAATAGGACATTATAT-T-ATATACACATATAAATTGATATTCTTAC 2562
Query 2576 AGAGTTTACAGTAACAATTGTGAGGTCAGTTATTGTAATGTTCCTTTTTTACCAAGAAAG 2635
|||||| |||||||||||| ||| ||||||||||||| ||||||||||||||||||||||
Sbjct 2563 AGAGTT-ACAGTAACAATTTTGACGTCAGTTATTGTATTGTTCCTTTTTTACCAAGAAAG 2621
Query 2636 TGTTGGATACATTTCTATTTATTACAAGGAGAATGTATATAAACAAAGTTTTGAAACTGA 2695
||||| |||||||||||||||||| ||||||||||| ||||||||| ||||||||||||
Sbjct 2622 TGTTGAATACATTTCTATTTATTATGAGGAGAATGTAAATAAACAAAATTTTGAAACTGA 2681
Query 2696 GGGAGTCGCT 2705
||| ||||||
Sbjct 2682 GGGCGTCGCT 2691
> Ahg902514 jgi|Araly1|902514|Al_scaffold_0004_3164
Length=2376
Score = 1759 bits (952), Expect = 0.0
Identities = 1975/2452 (81%), Gaps = 137/2452 (6%)
Strand=Plus/Plus
Query 144 ATGGGATGTGCGGCGTCCAAGCTCGATAACGAAGATGCTGTACGGCGTTGTAAGGATCGC 203
||||||||||| ||||| ||||||||||||||||| |||| ||||| || || ||||||
Sbjct 1 ATGGGATGTGCAGCGTCGAAGCTCGATAACGAAGACACTGTTCGGCGATGCAAAGATCGC 60
Query 204 CGCCGTCTGATGAAAGAAGCTGTCT-ACGCTCGTCATCATCTCGCCGCCGCTCACGCCGA 262
|| ||||| ||| ||| |||| | |||| || ||||| ||||| || |||||||| ||
Sbjct 61 CGTCGTCTCATGTCGGAATCTGT-TAACGCACGACATCACCTCGCTGCAGCTCACGCTGA 119
Query 263 TTACTGCCGATCGCTTCGTATCACTGGATCTGCTCTTTCCTCATTCGCCTCCGGTGAGCC 322
|||||| ||||||| ||| ||||||||||||||||||| || |||||| ||||||||||
Sbjct 120 TTACTGTAGATCGCTCCGTCTCACTGGATCTGCTCTTTCTTCTTTCGCCGCCGGTGAGCC 179
Query 323 TCTCTCTGTATCTGATCAAACTCCGGCTGTTTTCCTCCATACTCCCCCTCCTCCGCTTTC 382
||| ||||||| ||||| |||||||| ||||| |||||| | | |||| |||| ||
Sbjct 180 TCTAGCTGTATCAGATCAGACTCCGGCCGTTTTTCTCCAT--T-CTACTCCGCCGCCGTC 236
Query 383 TGAACAATC-TCCGGCTAAATTTGTCCCT-C--CA-C-G-TTTTTC-GCCGTCGCCTGCT 434
| |||| || ||| || |||||||| ||| | || | | | ||| | || | ||
Sbjct 237 TCAACACTCATCC-GCCAAATTTGTACCTCCGTCACCTGCTCCTTCTTCAGT-ATATACT 294
Query 435 CCTTCTTCTGTTTATCCTCCTTCGAC-GTCTCCTTCCGTCGCCAGTTCTAAGC-AGCCTT 492
|| | | | ||||||||| || |||||||||||| || || || || | | |||
Sbjct 295 CC-GCCGCCG--GCTCCTCCTTC-ACGGTCTCCTTCCGTTGCTAGCTCAAAACTA-CCTC 349
Query 493 CAG-TCATGTCCA-CCTCTTCCAATCGACGCCGG--A-AACAGCAAC--CAA-AACCT-A 543
||| || | | || | || || ||||| |||||| | |||| |||| ||| ||||| |
Sbjct 350 CAGTTC-T-TTCAGCTTCATCTAATCGGCGCCGGAAACAACAACAACAACAACAACCTAA 407
Query 544 GACTGCCTCATATTCTCTCGGAGTCAAGTCCTTCTTCTTCTCCGAGAAGTGAGAGATCCA 603
| |||||||||||||||| | ||| | |||| ||| |||||||||||||
Sbjct 408 G-TTGCCTCATATTCTCTC---G---AGT-C--CTTCGTCT------AGTGAGAGATCCA 451
Query 604 ATTTCATGCCCAATTTGTATCCC-AGTGCTTATCAGAACTCTACTTACTCCGCTACTCCT 662
|||||||||| | ||| | |||| | |||||| ||||||||||||||||| || ||||||
Sbjct 452 ATTTCATGCCGAGTTTCT-TCCCTACTGCTTACCAGAACTCTACTTACTCGGCGACTCCT 510
Query 663 TCTCATGCCTCCTCCGTCTGGAACTGGGAGAATTTCTACCCTCCTTCTCCTCCCGATTCC 722
||||| || || ||||| ||||| ||||||||||| ||||||||||| ||||||||||||
Sbjct 511 TCTCAAGCTTCTTCCGTTTGGAATTGGGAGAATTTTTACCCTCCTTCACCTCCCGATTCC 570
Query 723 GAATTCTTCAACAGGAAGGCTCAAGAGAAGAAAC-ATAACTCCGATAAT--CGAT-T--- 775
|||||||||||| |||| ||||||||| ||||| | | ||| | || |||| |
Sbjct 571 GAATTCTTCAACCGGAAATCTCAAGAGAGGAAACAACAGGACCGCT-ATGGCGATCTGGC 629
Query 776 CAACGACGAGGATACGGAAACAGTGAGGTCAGAGTATGATTTCTTCGACACGAGGAAGCA 835
| ||| ||||||||| ||||||| ||| || ||| ||||||| ||| || | ||||
Sbjct 630 CGACGGCGAGGATACCGAAACAGAGAGATCGGAGCATGATTTTTTC--CA-TATGAAG-- 684
Query 836 AAAGCAGAAGCAGTTCGAATCAATGAGAAA-T-C--AGGTGGAGGAAG-AGACGGAGACG 890
||||||||||||||||| || |||| ||| | | ||||||||| | || ||||||
Sbjct 685 -AAGCAGAAGCAGTTCGAGTCTATGA-AAAGTGCTGCGGTGGAGGAGGAAG-TGGAGACA 741
Query 891 GAGAGAGAGGAAGTACAGTGTAGTGAATGGGAGGATCACGATCATTACAGCACCACGAGC 950
|||||||||||||| |||||||| |||||||| ||||||||||||||||| || ||||||
Sbjct 742 GAGAGAGAGGAAGTGCAGTGTAGCGAATGGGATGATCACGATCATTACAGTACGACGAGC 801
Query 951 TCCTCGGACGCAGCGGAGGAAGAGGAAGAAGATGATGATAGAGAATCAATTTCCGAGGTC 1010
|| || ||||| |||||||| ||||| ||||| || |||||||| ||||| || ||| ||
Sbjct 802 TCATCCGACGCTGCGGAGGAGGAGGAGGAAGAAGAGGATAGAGAGTCAATGTCTGAGATC 861
Query 1011 GGGACACGCTCCGAGTTTGGATCTACGGTGAGAAGTAATTCGATGAGACGGC---ATCAT 1067
||||| || || || ||||||||| | ||||| | || |||||||||||||| ||||
Sbjct 862 GGGACGCGTTCTGACTTTGGATCTTCCGTGAGGACTAGTTCGATGAGACGGCAGTATCAC 921
Query 1068 CA--A-CA--A-C--CTTC-ACCAATGCCGCAAGTA-TACGGCGGCGCTGAACA-AAGTA 1116
|| | || | | | | | ||||||||| || | || || || | || ||| || |
Sbjct 922 CAGCAGCAGCAGCAGCCCCAAGCAATGCCGC-AGGAGTATGGAGGTGTTGCACAGGAG-A 979
Query 1117 AATAT-GATAAAGCAGATGATGCTACGATATCTTCTGGTAGCTATAGAGGCGGAGGAGAT 1175
| ||| | ||||||||||| || ||| ||||| || ||||| ||||||||||||
Sbjct 980 AGTATCG-CAAAGCAGATGACGCGACG---TCTTCCGGCAGCTACCGAGGCGGAGGAG-- 1033
Query 1176 ATCGCTGACATGAAGATGGTAGTTAGGCATAGGGATTTGAAAGAAATCATCGATGCCATT 1235
| | ||| | |||| | |||||||| |||||||| || || | ||||| |||
Sbjct 1034 A-----G--ATG--G-TGGT-G--AGGCATAGAGATTTGAAGGAGATTGTTGATGCGATT 1080
Query 1236 AAGGAAAATTTCGATAAGGCTGCTGCCTCAGGGGAGCAAGTCTCTCAGATGC-TCGAGCT 1294
||||| |||||||| ||||| ||| || |||| || |||||||||||||||| || | ||
Sbjct 1081 AAGGAGAATTTCGACAAGGCGGCTTCCGCAGGCGATCAAGTCTCTCAGATGCTTC-ATCT 1139
Query 1295 TGGCAGAGCTGAGCTCGATCGTAGTTTCAGCCAATTGAAGAAAACGGTGATTCATTCGAG 1354
|||||| ||| |||||||||| |||||||||||||||||||| |||||||||||||||||
Sbjct 1140 TGGCAGGGCTCAGCTCGATCGCAGTTTCAGCCAATTGAAGAAGACGGTGATTCATTCGAG 1199
Query 1355 TAGTTTATTAAGCAACTTGAGCTCGACATGGACCTCGAAGCCGCCATTGGCAGTCAAGTA 1414
|||| |||| || ||| ||||||| || ||||| || ||||||||||||| |||||||||
Sbjct 1200 TAGTGTATTGAGTAACCTGAGCTCAACTTGGACTTCAAAGCCGCCATTGGAAGTCAAGTA 1259
Query 1415 TAGGATAGACACGACTGCGCTGGATCAACCGAACAGTTCGAAGAGCCTTTGTTCCACTCT 1474
||| | ||||| || || |||| |||||| | | | |||||||||| ||||| |||
Sbjct 1260 CAGGCTTGACACAACCGCATTGGACCAACCGGGCGGCCCCAAGAGCCTTTCTTCCAGTCT 1319
Query 1475 TGACCGTCTCTTGGCATGGGAGAAGAAGCTTTATGAAGAAATTAAGGCTAGAGAAGGTTT 1534
||||| |||||||||||||| ||||| || || || ||| | |||||||||||||| ||
Sbjct 1320 AGACCGCCTCTTGGCATGGGAAAAGAAACTCTACGAGGAAGTCAAGGCTAGAGAAGGGTT 1379
Query 1535 CAAGATTGAGCATGAGAAGAAGTTATCACAGCTTCAAAGCCAAGAATATAAAGGGGAGGA 1594
|||||||| ||||| |||||||| ||| |||||||||||||||| || ||||| ||| |
Sbjct 1380 GAAGATTGAACATGAAAAGAAGTTGTCAAAGCTTCAAAGCCAAGAGTACAAAGGAGAGAA 1439
Query 1595 TGAAG-CTAAGTTAGACAAGACAAAGGCCTCTATAACGAGGTTACAGTCACTGATCATTG 1653
|| || |||| |||||||||||||||||||||||||||||||||| || || || ||||
Sbjct 1440 TG-AGATTAAGCTAGACAAGACAAAGGCCTCTATAACGAGGTTACAATCTCTTATTATTG 1498
Query 1654 TTACTTCTCAAGCTGTTA-CTACCACATCTACTGCCATCATCCGTCTTCGTGATACTGAC 1712
||||||| || || || | | || ||||||||||| || ||||| ||||| ||||||||
Sbjct 1499 TTACTTCCCAGGCCGTCAGC-ACAACATCTACTGCAATTATCCGCCTTCGAGATACTGAT 1557
Query 1713 CTTGTTCCACAACTCGTTGAGCTCTGTCATGGCTTTATGTACATGTGGAAATCTATGCAT 1772
|||||||| || |||||||| |||||||||||||| ||||||||||||||||| ||||||
Sbjct 1558 CTTGTTCCGCAGCTCGTTGAACTCTGTCATGGCTTCATGTACATGTGGAAATCAATGCAT 1617
Query 1773 CAATACCATGAGACTCAGAAC-AGCATCGTGGAGCAAGTCCGGGGGCTCATTAACAGATC 1831
|||| ||| || | ||||||| | |||||| ||||||| | ||||||||||||||| ||
Sbjct 1618 CAATTCCACGAAATTCAGAACCA-CATCGTACAGCAAGTTCAGGGGCTCATTAACAGGTC 1676
Query 1832 GGGCAAAGGCGAATCAACATCTGAGCTACACCGACAAGCTACACGTGACTTGGAATCAGC 1891
|||||||| |||||||||||||| |||||||||||||| ||||| ||||||||| ||||
Sbjct 1677 AGGCAAAGGGGAATCAACATCTGAACTACACCGACAAGCAACACGCGACTTGGAAACAGC 1736
Query 1892 TGTCTCTTCT-TGGCACTCCAGTTTCAGTAGTTTGATTAAATTCCAACGTGACTTCATAC 1950
||| |||| | ||||||||||||||| || | |||||||||||||||| ||||||||||
Sbjct 1737 TGTGTCTT-TATGGCACTCCAGTTTCTGTCGGCTGATTAAATTCCAACGAGACTTCATAC 1795
Query 1951 ACTCAGTTCACGCCTGGTTCAAGCTGACCCTTCTTCCGGTTTGCCAAGAAGACGCCGCCA 2010
| || ||||| |||||||||||||| ||||||||||| ||||||||||| ||| |||
Sbjct 1796 ATTCGGTTCAAGCCTGGTTCAAGCTAACCCTTCTTCCAGTTTGCCAAGACGACAAT-CCA 1854
Query 2011 ATCATCACAAAGAGCCGCTCGATGCTTACGCCTTCTGCGATGAGTGGAAACTCGCTCTAG 2070
| ||||||||||||| | || || ||||| || |||||||||||||| || ||||||
Sbjct 1855 AG--TCACAAAGAGCCGGTAGACGCCTACGCATTTTGCGATGAGTGGAAGCTTACTCTAG 1912
Query 2071 ATCGTATTCCCG-ATACAGTTGCATCTGAGGCAATCAAGAGCTTCATCAACGTTGTACAC 2129
| || | ||||| | ||||| || || || |||||||| ||||||||| ||||||| ||
Sbjct 1913 ACCG-AGTCCCGGACACAGTGGCTTCAGAAGCAATCAAAAGCTTCATCCACGTTGTTCAA 1971
Query 2130 GTGATATCCGCAAAACAAGCCGATGAAC-ACAAGATAAAGAAAAGAACAGAATCAGCATC 2188
||||||||||| |||||| |||| || | | |||||||||||| |||| |||||||||||
Sbjct 1972 GTGATATCCGCGAAACAATCCGAGGAGCTA-AAGATAAAGAAACGAACCGAATCAGCATC 2030
Query 2189 AAAAGAGCTTGAGAAGAAGGCTTCGTCGGTTAGAAACCTAGAGAGAAAATACTACCAGTC 2248
||| |||||||||||||| ||||| ||| |||||||| | || || |||||||| |||||
Sbjct 2031 AAAGGAGCTTGAGAAGAAAGCTTCATCGCTTAGAAACATCGAAAGGAAATACTATCAGTC 2090
Query 2249 ATACTCAATGGTTGG-TGTCGGTTTACCAGA-GTCAGGACCCGATAACCAACACATGTTA 2306
|||||| | |||||| | | ||| | ||||| | ||||||| || ||| ||||||||||
Sbjct 2091 ATACTCCACGGTTGGGTTT-GGTCTCCCAGATG-CAGGACCAGACAACGGACACATGTTA 2148
Query 2307 GACGCTCGAGACCCGTTAAGCG-ATAAAAAGTCAGAGCTTGCG-GTTTGCCAAAGGAGAG 2364
|| ||||| ||||| | | || | ||||||| |||||| | | | ||||| || ||||
Sbjct 2149 GATGCTCGGGACCCACTCA-CGGAGAAAAAGTTAGAGCTAG-GAGCATGCCAGAGAAGAG 2206
Query 2365 TTGAGGAAGAGATGGTGAAATACTCAAAGGCAATAGAAGTGACAAGAGCCATGACTTTGA 2424
| |||||||| ||| |||| | ||||||||||||||||| |||||||||||||| |||
Sbjct 2207 TGGAGGAAGAAATGCTGAAGCATTCAAAGGCAATAGAAGTAACAAGAGCCATGACGCTGA 2266
Query 2425 ATAATCT-GCAGACAGGGTTGCCTGGTGTGTTCCAATCTTTAACAAGTTTCTCTGCTTTG 2483
|||| || ||||||||| |||||||||||||||||| |||| || |||||||||||| ||
Sbjct 2267 ATAA-CTTGCAGACAGGTTTGCCTGGTGTGTTCCAAGCTTTGACGAGTTTCTCTGCTCTG 2325
Query 2484 TTCATGGAGTCTCTT-CAAACGGTATGCACTCGCTCATACTCTATCAAATAG 2534
|||| |||||| ||| |||||||||||||||||||||||||| |||||||||
Sbjct 2326 TTCACGGAGTC-CTTACAAACGGTATGCACTCGCTCATACTCCATCAAATAG 2376
> Ahg470059 jgi|Araly1|470059|fgenesh2_kg.1__13__AT1G02110.1
Length=2042
Score = 143 bits (77), Expect = 7e-33
Identities = 113/130 (87%), Gaps = 4/130 (3%)
Strand=Plus/Plus
Query 617 TTTGTATCCCAGTGCTTATCAGAACTCTACTTACTC-CGCTACTCCTTCTCATGCCTCCT 675
||| ||||||| |||| | ||||||||||| ||||| |||| |||||||||| || ||||
Sbjct 360 TTTCTATCCCACTGCTCACCAGAACTCTACCTACTCTCGCT-CTCCTTCTCAAGCTTCCT 418
Query 676 CCGTCTGGAACTGGGAGAATTTCTACCCTCCTTCTCCTCCCGATTCCGAATTCTTC-AAC 734
| ||||||||||||||||||||||||||||||||||||||||| || || |||||| |||
Sbjct 419 CTGTCTGGAACTGGGAGAATTTCTACCCTCCTTCTCCTCCCGACTCTGAGTTCTTCGAAC 478
Query 735 AGGAAGGCTC 744
| || ||||
Sbjct 479 -GCAAAGCTC 487
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 102653210275
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5