BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G60470.1 Length=1860 Score E Sequences producing significant alignments: (Bits) Value Ahg899011 jgi|Araly1|899011|Al_scaffold_0005_2977 2283 0.0 Ahg349109 jgi|Araly1|349109|fgenesh1_pg.C_scaffold_5002501 370 2e-101 Ahg900382 jgi|Araly1|900382|Al_scaffold_0004_1032 243 5e-63 > Ahg899011 jgi|Araly1|899011|Al_scaffold_0005_2977 Length=1641 Score = 2283 bits (1236), Expect = 0.0 Identities = 1508/1637 (92%), Gaps = 28/1637 (2%) Strand=Plus/Plus Query 1 ATGAACCGAAGGTTGAATCATGAACCGGACACGGTCCTTGAGTTAAACGAATCGACTCCT 60 |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 1 ATGAACCGAAGGTTGAATCATGAACCGGACACGGTCCTTGAGTTAAACAAATCGACTCCA 60 Query 61 GGGATGTGGTGGTTTCCTACAAATCCTGAGCATCGTTGCATCTACCGAGTCCCTGACCGT 120 ||||| |||||||||||||||||||||||||||||||||||||||||||||||| | ||| Sbjct 61 GGGATATGGTGGTTTCCTACAAATCCTGAGCATCGTTGCATCTACCGAGTCCCTCATCGT 120 Query 121 CTACGTCGTGTAAATCCAGAAGCTTACACGCCTCAATTACTCCTCATTGGACCTCTTCAC 180 ||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||| Sbjct 121 CTACGTCGTGTAAATCCAGAAGCATACACGCCTCAATTACTTCTCATTGGACCTCTTCAC 180 Query 181 CATTCTTTAAAATTTCAAGCTCTCAACTCTCGTGGAGATATCACAAACACAAAGTTAATG 240 ||||||||||||| ||||||||||| ||| ||||||||||||||||||||||||||||| Sbjct 181 CATTCTTTAAAATCTCAAGCTCTCATGTCTAGTGGAGATATCACAAACACAAAGTTAATG 240 Query 241 GGCTACTTAAACATGGAGGAGCATAAGAAGATTTACCTTGCGAGATTCTCAGAAAGGCTT 300 |||||||||||||||||||||||||| ||||||||||| ||||||||||| |||| |||| Sbjct 241 GGCTACTTAAACATGGAGGAGCATAAAAAGATTTACCTCGCGAGATTCTCGGAAAAGCTT 300 Query 301 GCAGGTCAAAAAACGATTGATGAACTCagaagaagaatcaaagaagaagaagaTATAATA 360 | ||| ||||||| ||||||||| ||||||||| |||||||||||| ||||||||||| Sbjct 301 GGAGGGAAAAAAACCATTGATGAATTCAGAAGAATAATCAAAGAAGACGAAGATATAATC 360 Query 361 AGGGCAAGCTACTCTGAGTCAACTGCCTGGATTGAATCTCCAAAGTTCGTGGACATGATC 420 |||||| |||||||||| |||||||||||||| |||||| ||||||||||||| |||||| Sbjct 361 AGGGCATGCTACTCTGAATCAACTGCCTGGATCGAATCTTCAAAGTTCGTGGATATGATC 420 Query 421 CTACACGACTCTGTTTTCATAATAGAGTTCCTTTTAAGGAGTAAAGATTACACCTTACTT 480 ||||| |||||||||||||||||||||||| | |||||||||||||| |||| ||||||| Sbjct 421 CTACATGACTCTGTTTTCATAATAGAGTTCATGTTAAGGAGTAAAGAGTACATCTTACTT 480 Query 481 GAGGACCAAGGATCATGC-ATCAAGAAAACATGGGATCCTATATTTGAGCAGCCTTGTCT 539 ||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||| Sbjct 481 GAGGACCAAGGATCA-GATATCAAGAAAACATGGGATCCTATATTTGAGCAGCCTTGTCT 539 Query 540 TCAAACTACTGTGGATGAAGACCTCATTTTGCTCGAGAATCAACTTCCTTACTTCATCCT 599 |||||| |||||||||||||||||||||||||||||||| || ||||||||||||||||| Sbjct 540 TCAAACCACTGTGGATGAAGACCTCATTTTGCTCGAGAACCAGCTTCCTTACTTCATCCT 599 Query 600 CGAGAAACTCTTCGATCCAATCGTTCCAATACTCCGCCCAAACCAAACACTCCGCCAGAT 659 ||||||||||||||||||||| |||||||||||||| ||| |||| ||||||||| || | Sbjct 600 CGAGAAACTCTTCGATCCAATAGTTCCAATACTCCGTCCAGACCAGACACTCCGCAAGTT 659 Query 660 AGTCATCACTTACTTCAGATTCCAAGGTAATATCGGAGTTGACTCCAGATTTAGACATTT 719 | |||||||||||||||||||||||||||||||| ||| |||||||||||| | |||||| Sbjct 660 AATCATCACTTACTTCAGATTCCAAGGTAATATCAGAGATGACTCCAGATTCAAACATTT 719 Query 720 CACTGATCTATTCCGATGTGTCCGCGTGGAGACACTTAGGCCAAAGATGCCAAAGAATAA 779 ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 720 CACTGATCTATTCCGATGTGTCCGCGTGGAGACACTTAGGCCAAAGAAACCAAAGAATAA 779 Query 780 ATTCAGATATTTAGTTGGTCTGTTCCGATTTGTCCATTTGGGAACACACGGGTCA--AG- 836 |||||||||||||| |||||||||||||||| | | ||||||||||| |||||| || Sbjct 780 ATTCAGATATTTAGCTGGTCTGTTCCGATTTTTTCGCTTGGGAACACAGGGGTCATCAGG 839 Query 837 AGAATTAGAAAAGAGTCGTCCTCAAGAACATAAAGCTCTTCGCATGGAGAAGACACATGG 896 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 840 AGAATTAGAAAAGAGTCGTCCTCAAGAACATAAAGCTCTTCCCATGGAGAAGACACATGG 899 Query 897 GTCAGGAGAACCAACAAAGAGCACATTCAGATATATAGCTGATCTTTTCCGGTGTGTTCC 956 ||||||||||||||||||||||| ||||||||| ||||||||||||||||| |||||||| Sbjct 900 GTCAGGAGAACCAACAAAGAGCAAATTCAGATACATAGCTGATCTTTTCCGATGTGTTCC 959 Query 957 GATGGAGACACTAGGTTCGAAAAGAGAA---GAAAAGAGTCGT---CTTGAACGACTCAA 1010 |||||||||| ||| || ||||||||| |||||||||||| |||||||| ||||| Sbjct 960 CATGGAGACACAAGGGTCAAAAAGAGAAACAGAAAAGAGTCGTAGTCTTGAACGGCTCAA 1019 Query 1011 AACTCATCGCATGGAGGAGACGTCACATGGTCATGGCTCaaaaaaaaCAAAAGAGCTACC 1070 ||||||||||||| |||||||||||||||||||||| ||||||||| ||||||| | || Sbjct 1020 AACTCATCGCATGAAGGAGACGTCACATGGTCATGGGTCAAAAAAACCAAAAGATCCCCC 1079 Query 1071 GATCATCAAACACATGTATAACGCGGCAAAGCTACAAAGTGCAGGAGTGAAGTTCAAGGC 1130 |||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||| Sbjct 1080 GATCATCAAACACATGTATAACGCGGCAAAGCTATACAGTGCAGGAGTGAAGTTCAAGGC 1139 Query 1131 CGTGACAGATGAGTTCTCGATAGATGTGACATTTGAGAATGGTTGTTTGAAGATACCTTG 1190 |||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||| Sbjct 1140 TGTGACAGATGAGTTCTCGATAGATGTGAAATTCGAGAATGGTTGTTTGAAGATACCTTG 1199 Query 1191 TTTGTGGGTTCCTGATGATGCAGAGATCACACTGAGAAATATAATGGCGCTTGAGCAATG 1250 ||||||||||||||||||||| ||||||||| | ||||||||||||||||| |||||||| Sbjct 1200 TTTGTGGGTTCCTGATGATGCGGAGATCACATTAAGAAATATAATGGCGCTAGAGCAATG 1259 Query 1251 CCATTACCCTTTCAAAGCATACGTCTGTAACTTCGTCAGTTTCTTGGATTTCCTCATCGA 1310 |||||||||||||||||| |||||||||||||||||||||||||||||||||||||| || Sbjct 1260 CCATTACCCTTTCAAAGCCTACGTCTGTAACTTCGTCAGTTTCTTGGATTTCCTCATAGA 1319 Query 1311 CACTGATAAAGACGTGGACTTACTCATGGAGAACGGG-AT-------A--------CTAA 1354 ||||||||||||||| ||||| ||||||||||||||| || | |||| Sbjct 1320 CACTGATAAAGACGTCGACTTGCTCATGGAGAACGGGTATGGTTTTGAAAGGGATACTAA 1379 Query 1355 ACAACTGGGGGGAGAAGAGTTCTGTGGCGGTGGCGGAGATGGTGAACACGCTATTTTCGG 1414 ||||||||||| |||||||||| ||||||||||||||||||||||||||||| ||||||| Sbjct 1380 ACAACTGGGGG-AGAAGAGTTCGGTGGCGGTGGCGGAGATGGTGAACACGCTCTTTTCGG 1438 Query 1415 GGGTGGTGGAGAGTCGTTCTTACTATGCTGGTATAGCGTCTAGAGTCAACGCCTATTATG 1474 | || ||||||||||||||||||||||||||||| ||||| ||||||||||||||||||| Sbjct 1439 GCGTCGTGGAGAGTCGTTCTTACTATGCTGGTATTGCGTCAAGAGTCAACGCCTATTATG 1498 Query 1475 AAAATCCAGTCAACAGGTCACGCACCATCCTCGGACGCCAGTATTTCGGTAATCTATGGA 1534 ||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||| Sbjct 1499 AAAATCCAGTCAACAGGACACGCACCATCCTGGGACGCCAGTATTTCGGTAATCTATGGA 1558 Query 1535 GAGGTACCGCTACTGTCGCCGCTGCGCTTCTTTTGGTGATGACTCTTATCCAGACGGTGG 1594 ||||||| |||||| |||| |||| |||||||||| |||||||| || |||||||||||| Sbjct 1559 GAGGTACGGCTACTATCGCTGCTGGGCTTCTTTTGCTGATGACTTTTGTCCAGACGGTGG 1618 Query 1595 CTTCTATTCTTCAGGTT 1611 |||| ||| |||||||| Sbjct 1619 CTTCGATTATTCAGGTT 1635 > Ahg349109 jgi|Araly1|349109|fgenesh1_pg.C_scaffold_5002501 Length=1332 Score = 370 bits (200), Expect = 2e-101 Identities = 378/463 (82%), Gaps = 16/463 (3%) Strand=Plus/Plus Query 8 GAAGGTTGAATCATGAACCGGACACGGTCCTTG-AGTTAAACGAATC-GACTCCTGGGAT 65 ||| |||| ||| |||| || |||| ||| | |||| ||| || | | |||||||||| Sbjct 86 GAATGTTGGATCCTGAATTGGGCACGATCC-AGAAGTTGAAC-AAACAGGCTCCTGGGAT 143 Query 66 GTGG-TGGTTTCCTACAAATCCTG-AGCATCGTTGCATCTACCGAGTCCCTGACCGTCTA 123 |||| | ||||| | |||| | | ||||| |||||||||| |||| ||| || || || Sbjct 144 GTGGCT-CTTTCCGAAAAAT-CAGAAGCATTGTTGCATCTATAGAGTGCCTAACAGTATA 201 Query 124 CGTCGTGTAAATCCAGAAGCTTACACGCCTCAATTACT-CCTCATTGGACCTCTTCACCA 182 ||| | ||||| |||||||| || || ||||||||||| || |||| ||||| ||||| Sbjct 202 CGTAGAGTAAAACCAGAAGCATATACTCCTCAATTACTGATTC-TTGGTCCTCTCCACCA 260 Query 183 TTCTTTAAAATTTCAAGCTCTCAACTCTCGTGGAGATATCACAAACACAAAGTTAATGGG 242 ||||| ||||| ||| |||||||| |||| ||||||||| ||| || |||||| |||||| Sbjct 261 TTCTTCAAAATCTCATGCTCTCAAGTCTCTTGGAGATATTACAGACTCAAAGTCAATGGG 320 Query 243 CTACTTAAACATGGAGGAGCATAAGAAGATTTACCTTGC-GAGATTCTCA-GAA-AGGCT 299 ||||||||||||||||||||||||||||||||||||||| || |||| || ||| || | Sbjct 321 CTACTTAAACATGGAGGAGCATAAGAAGATTTACCTTGCCGA-ATTCGCACGAAGAG--T 377 Query 300 TGCAGGTCAAAAAACGATTGATGAACTCagaagaagaatcaaagaagaagaagaTATAAT 359 || ||| |||| || || |||| | ||||||||| |||| ||||||| ||||| || || Sbjct 378 TGAAGGGGAAAAGACCATCGATGGATTCAGAAGAATAATCGAAGAAGATGAAGAGATGAT 437 Query 360 AAGGGCAAGCTACTCTGAGTCAACTGCCTGGATTGAATCTCCAAAGTTCGTGGACATGAT 419 |||||||||||||| || ||||| |||||||| |||||| ||| ||| ||||||||||| Sbjct 438 CAGGGCAAGCTACTCGGAATCAACGGCCTGGATAGAATCTGCAATGTTTGTGGACATGAT 497 Query 420 CCTACACGACTCTGTTTTCATAATAGAGTTCCTTTTAAGGAGT 462 |||||| ||||||||||| || |||||||| |||| |||||| Sbjct 498 CCTACATGACTCTGTTTTTGTACTAGAGTTCATTTTGAGGAGT 540 > Ahg900382 jgi|Araly1|900382|Al_scaffold_0004_1032 Length=1131 Score = 243 bits (131), Expect = 5e-63 Identities = 211/249 (85%), Gaps = 8/249 (3%) Strand=Plus/Plus Query 57 TCCTGGGATGTGGTGGTTTCCTACAAATCCTGAGCA-TCGTTGCATCTACCGAGTCCCTG 115 ||| || |||||| |||||||||||||||| ||| | | ||||||||||| ||||||| | Sbjct 21 TCCAGGAATGTGGCGGTTTCCTACAAATCCCGAG-ATTTGTTGCATCTACAGAGTCCCAG 79 Query 116 ACCGTCTACGTCGTGTAAATCCAGAAGCTTACACGCCTCAATTACTCCTCATTGGACCTC 175 || ||| ||| | |||||||||||||| || || ||||||||||||||||||||||||| Sbjct 80 ACTGTCCGCGTAGCGTAAATCCAGAAGCATATACACCTCAATTACTCCTCATTGGACCTC 139 Query 176 TTCACCATTCTTTAAAATTTCAAGCTCTCAACTCTCGTGGAGATATCACAAACACAAAGT 235 |||||||||||||||||| ||||||||||| ||| |||||||||||||| | |||| || Sbjct 140 TTCACCATTCTTTAAAATCTCAAGCTCTCATGTCTAGTGGAGATATCACATATACAATGT 199 Query 236 TAATGGGCTACTTAAACATGGAGGAGCATAAGAAGATTTACCTT-GCGAGA-TTCTCA-G 292 || ||| |||||||||||||| ||| ||||||||||||| || ||| || ||| || | Sbjct 200 CAACGGGATACTTAAACATGGAAGAGTGTAAGAAGATTTAC-TTAGCG-GAATTCACACG 257 Query 293 AAAGGCTTG 301 || || ||| Sbjct 258 AAGGG-TTG 265 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 69857509330 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5