BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G60600.1
Length=1207
Score E
Sequences producing significant alignments: (Bits) Value
Ahg486536 jgi|Araly1|486536|fgenesh2_kg.5__2528__AT3G60600.2 826 0.0
Ahg483647 jgi|Araly1|483647|fgenesh2_kg.4__2707__AT2G45140.1 636 0.0
Ahg899705 jgi|Araly1|899705|Al_scaffold_0004_355 381 6e-105
Ahg899704 jgi|Araly1|899704|Al_scaffold_0004_354 372 4e-102
Ahg899703 jgi|Araly1|899703|Al_scaffold_0004_353 372 4e-102
Ahg932384 jgi|Araly1|932384|scaffold_400372.1 207 1e-52
> Ahg486536 jgi|Araly1|486536|fgenesh2_kg.5__2528__AT3G60600.2
Length=1310
Score = 826 bits (447), Expect = 0.0
Identities = 515/545 (94%), Gaps = 16/545 (3%)
Strand=Plus/Plus
Query 190 GATGAGTAACAGCGAGCTTCTCACCGTCGAGCCTCTCGATCTTCAATTCCCTTTTGAATT 249
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 122 GATGAGTAACAGCGAGCTTCTCACCGTGGAGCCTCTCGATCTTCAATTCCCTTTTGAATT 181
Query 250 GAAGAAGCAGATCTCTTGCTCTCTCTATTTGACGAACAAGACCGACAATAATGTTGCCTT 309
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 182 GAAGAAGCAGATCTCTTGCTCTCTGTATTTGACGAACAAGACCGACAATAATGTTGCCTT 241
Query 310 TAAGGTTAAGACGACGAATCCGAAAAAGTATTGTGTTAGGCCTAATACTGGAGTTGTTC- 368
|||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 242 TAAGGTTAAGACTACGAATCCGAAAAAGTATTGTGTTAGGCCTAACACTGGAGTTGTTCT 301
Query 369 TCCCGAGGTCTACTTGCGAAGTTCTTGTGACCATGCAAGCTCAAAAGGAAGCTCCTTCCG 428
|||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
Sbjct 302 TCCC-AGGTCTACTTGTGAAGTTCTTGTGACCATGCAAGCTCAAAAGGAAGCTCCTTCAG 360
Query 429 ATATGCAGTGCAAGGACAAGTTTCTGCTTCAAGGTGTGATAGCTAGTCCTGGTGTCACAG 488
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 361 ATATGCAGTGCAAGGACAAGTTTCTGCTCCAAGGTGTGATAGCTAGTCCTGGTGTCACAG 420
Query 489 CCAAGGAAGTTACTCCTGAGATGTTTAGCAAAGAGGCTGGACATCGAGTTGAGGAAACTA 548
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 421 CCAAGGAAGTTACTCCTGAGATGTTTAGCAAAGAGGCTGGACATCTAGTTGAGGAAACTA 480
Query 549 AACTGAGAGTTACTTATGTTGCTCCACCACGACCACCATCACCGGTTCACGAAGGATCTG 608
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 AACTGAGAGTTACTTATGTTGCTCCACCACGACCACCATCACCGGTTCACGAAGGATCTG 540
Query 609 AAGAGGGTTCTTCACCCAGGGCTTCTGTCTCAGATAATGGACATGGTTCTGAATTTTC-G 667
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
Sbjct 541 AAGAGGGTTCTTCACCCAGGGCTTCTGTCTCAGATAATGGACATGGTTCTGAGTTTTCTG 600
Query 668 T--T--T--G----AGAGATTTATCGTGGACAACAAGGCTGGACATCAAGAAAACACATC 717
| | | | ||||||||| |||||||| ||||| || ||||||||||||||
Sbjct 601 TAATGCTCTGTTTCAGAGATTTAGCGTGGACAG---GGCTGAACCGCAAGAAAACACATC 657
Query 718 TGAGG 722
|||||
Sbjct 658 TGAGG 662
Score = 675 bits (365), Expect = 0.0
Identities = 399/414 (96%), Gaps = 7/414 (2%)
Strand=Plus/Plus
Query 720 AGGCGAGGGCACTCATTACCAAGCTAACCGAAGAAAAACAGTCTGCCATTCAACTGAACA 779
|||||||||| || || |||||||||||||||||||||||||||||||||||||||||||
Sbjct 899 AGGCGAGGGCTCTGATCACCAAGCTAACCGAAGAAAAACAGTCTGCCATTCAACTGAACA 958
Query 780 ACAGACTTCAAAGAGAACTGGATCAGTTAAGGCGTGAAAGCAAAAAGAGCCAAAGTGGTG 839
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 959 ACAGACTTCAAAGAGAACTGGATCAGTTAAGGCGTGAAAGCAAGAAGAGCCAAAGTGGTG 1018
Query 840 GTATCCCATTCATGTACGTTCTTTTGGTCGGACTCATCGGTCTAATTTTGGGATACATTA 899
||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||
Sbjct 1019 GTATCCCATTCATGTACGTTCTTCTGGTCGGACTCATTGGTCTAATTTTGGGATACATTA 1078
Query 900 TGAAGAGGACATAAACCACCCACCTTGAAATTAATCCCTCACCCGCCACGAA-G--Gaaa 956
|||||||||||||||||||||||| |||| |||||||||||||||||||||| | ||||
Sbjct 1079 TGAAGAGGACATAAACCACCCACC-TGAATTTAATCCCTCACCCGCCACGAAGGAAGAAA 1137
Query 957 aa-aaaa-aGACTTTTAACTCTTTTCAGTCGGACAtttttttCTCTTCTGTATTTGTCAA 1014
|| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1138 AACAAAATAGACTTTTAACTCTTTTCAGTCGGACATTTTTTTCTCTTCTGTATTTGTCAA 1197
Query 1015 TTTCGCCTTAAAAAGGTGTCCTAGAAGATTTGTGTTTCGTAACTCAGTTTGCTATGtttt 1074
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1198 TTTCGCCTTAAAAAGGTGTCCTAGAAGATTTGTGTTTCGTAACTCAGTTTGCTTTGTTTT 1257
Query 1075 tttCAACTTTTGTAATCCAAATGACTTTGCGTTGGTTCTTTCTCCACTAATTCT 1128
|| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1258 TT-CAACTTTTGTAATCCAAATGACTTTGCGTTGGTTCTTTCTCCACTAATTCT 1310
Score = 115 bits (62), Expect = 7e-25
Identities = 73/78 (94%), Gaps = 2/78 (3%)
Strand=Plus/Plus
Query 20 TCTCGATCGACGACTGCTCTCTCTCTGAACCGGAGACGGTGTCACGGGACGAATCTAATC 79
|||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||
Sbjct 3 TCTCGATCGACGACTG--CTCTCTCTGAACCGGAGACGGCGTCACGGGACGAATCTAATC 60
Query 80 GCCGGGAAACCGtttttt 97
|||||||||| ||| |||
Sbjct 61 GCCGGGAAACTGTTGTTT 78
> Ahg483647 jgi|Araly1|483647|fgenesh2_kg.4__2707__AT2G45140.1
Length=1204
Score = 636 bits (344), Expect = 0.0
Identities = 618/743 (83%), Gaps = 47/743 (6%)
Strand=Plus/Plus
Query 191 ATGAGTAACAGCGAGCTTCTCACCGTCGAGCCTCTCGATCTTCAATTCCCTTTTGAATTG 250
|||||| | | ||||||||||||| |||| ||| |||| |||||||||||||||||||||
Sbjct 217 ATGAGT-A-A-CGAGCTTCTCACCATCGATCCTGTCGACCTTCAATTCCCTTTTGAATTG 273
Query 251 AAGAAGCAGATCTCTTGCTCTCTCTATTTGACG-AACAAGACCGACAATAATGTTGCCTT 309
||||||||||||||||| |||||||||||| | ||||||||||| ||| |||| |||||
Sbjct 274 AAGAAGCAGATCTCTTGTTCTCTCTATTTGG-GTAACAAGACCGATAATTATGTCGCCTT 332
Query 310 TAAGGTTAAGACGACGAATCCGAAA-AAGTATTGTGTTAGGCCTAATACTGGAGTTGTTC 368
|||||||| ||||||||||| ||| ||||| || ||||||||||||||||| |||||||
Sbjct 333 CAAGGTTAAAACGACGAATCC-AAAGAAGTACTGCGTTAGGCCTAATACTGGTGTTGTTC 391
Query 369 -TCCCGAGGTC-TACTTGC-GAAGTTCTT-GTGACCATGCAAGCTCAAAAGGAAGCTCCT 424
|||| || || | ||| | |||||| || |||||||||||||||||||||||||||||
Sbjct 392 ATCCC-AGATCCT-CTT-CTGAAGTT-TTAGTGACCATGCAAGCTCAAAAGGAAGCTCCC 447
Query 425 TCCGATATGCAGTGCAAGGACAAGTTTCT-GCTTCAAGGTGT-GATAGCTAGTCCTGGTG 482
| ||||||||||| || || ||||| || ||||||| |||| | | |||||||| || |
Sbjct 448 GCTGATATGCAGTGTAAAGATAAGTT-CTTGCTTCAATGTGTAG-TGGCTAGTCCCGGAG 505
Query 483 TCACAGCCAAGGAAGTTACTCCTGAGATGTTTAGCAAAGAGGCTGGACATCGAGTTGAGG 542
||| ||||||| ||||||| ||||||||||||||||||||| || |||||||| || |
Sbjct 506 CCACCCCCAAGGATGTTACTCATGAGATGTTTAGCAAAGAGGCAGGGCATCGAGTCGAAG 565
Query 543 AAACTAAACTGAGAGTTA-CTTATGTTGCTCCACCACGACCACCATCACCGGTTC-ACGA 600
| |||||| |||||||| || ||||||||||||||||||||||||||||||||| | ||
Sbjct 566 AGACTAAATTGAGAGTTGTCT-ATGTTGCTCCACCACGACCACCATCACCGGTTCGA-GA 623
Query 601 AGGATCTGAAGAGGGTTCTTCACCCAGGGCTTCTGTCTCAGATAATGG-ACATGGTTCTG 659
||||||||||||||| ||||||||||||||||||||||| |||||||| | ||| |||||
Sbjct 624 AGGATCTGAAGAGGGCTCTTCACCCAGGGCTTCTGTCTCCGATAATGGGA-ATGCTTCTG 682
Query 660 AATTTT-C-GTT--TG-AGAGATTTATCGTGGACAACAAGGCTGGACATCAAGAAAACAC 714
| ||| | | | | | ||||||| || ||||| | || | ||| || ||| |
Sbjct 683 A-TTTCACTGCTGCTCCA-AGATTTAGCGCGGACAGGGTTGATG--C-TCAGGATAACTC 737
Query 715 ATCTGAGGCGAGGGCACTCATTACCAAG-CTAACCGAAGAAAA-ACAGTCTGCCA-TTCA 771
||||||||| || || | | || ||| || ||||| ||||| | | ||||| | ||||
Sbjct 738 ATCTGAGGCAAGAGCTTTGGTCAC-AAGACTCACCGAGGAAAAGA-ACTCTGC-AGTTCA 794
Query 772 ACTGAACAACAGACTTCAA-AGAGAACTGGATCAGTT-AAGGCGTGAAAGCAAAAAGA-G 828
| |||||||||| |||||| | |||| |||| ||||| ||| || |||||||| | || |
Sbjct 795 ATTGAACAACAGGCTTCAACA-AGAATTGGACCAGTTGAAG-CGCGAAAGCAAGA-GAAG 851
Query 829 CCAAAGTGGTGGTATCCCATTCATGTACGTTCTTTTGGTCGGACTCATCGGTCTAATTTT 888
|| |||||||| ||||| ||||||||||||||| |||||||||| |||||| |||| ||
Sbjct 852 TCAGAGTGGTGGAATCCCGTTCATGTACGTTCTTCTGGTCGGACTAATCGGTTTAATCTT 911
Query 889 GGGATACATTATGAAGAGGACAT 911
|||||||||||||||||||||||
Sbjct 912 GGGATACATTATGAAGAGGACAT 934
> Ahg899705 jgi|Araly1|899705|Al_scaffold_0004_355
Length=417
Score = 381 bits (206), Expect = 6e-105
Identities = 333/394 (85%), Gaps = 9/394 (2%)
Strand=Plus/Plus
Query 230 CTTCAATTCCCTTTTGAATTGAAGAAGCAGATCTCTTGCTCTCTCTAT-TTGACGAACAA 288
|||||||||||||||||||||||||||||||| ||||||||||| || |||||||||||
Sbjct 7 CTTCAATTCCCTTTTGAATTGAAGAAGCAGATGTCTTGCTCTCT-TAACTTGACGAACAA 65
Query 289 GACCGACAATAATGTTGCCTTTAAGGTTAAGACGACGAATCCGAAAAAGTATTGTGTTAG 348
||| |||||||||| ||||||||||||||||||| ||||||||||| ||||| |||||
Sbjct 66 GACAGACAATAATGGGGCCTTTAAGGTTAAGACGAAAAATCCGAAAAATTATTGCGTTAG 125
Query 349 GCCTAAT-ACTGGAGTTGTTCTCCCGAGGTCTACTTGCGAAGTTCTTGTGACCATGCAAG 407
| ||||| | |||| | |||| || | ||| ||||| ||||||||||||| |||||||
Sbjct 126 GTCTAATTA-TGGACTAATTCTTCCAAAGTCAACTTGTAAAGTTCTTGTGACAATGCAAG 184
Query 408 CTCAAAAGGAAGCTCCT--TCC-GATATGCAGTGCAAGGACAAGTTTCTGCTTCAAGGTG 464
| |||||||||| || | | | ||||||||| |||| || |||||| || ||||| |||
Sbjct 185 CCCAAAAGGAAGTTCTTAATTCTGATATGCAGAGCAATGAAAAGTTTATGATTCAAAGTG 244
Query 465 TGATAGCTAGTCCTGGTGTCACAGCCAAGGAAGTTACTCCTGAGATGTTTAGCAAAGAGG 524
| |||||||||||||| |||||||||| |||||||||| ||||| ||| || |||||
Sbjct 245 TAATAGCTAGTCCTGGACTCACAGCCAAAGAAGTTACTCGTGAGACGTTAAGGAAAGAAT 304
Query 525 CTGGACATCGAGTTGAGGAAACTAAACTGAGAGTTACTTATGTT-GCTCCACCACGACCA 583
| || |||| ||||||||| |||||||||| |||| |||||||| ||||||||||||| |
Sbjct 305 CGGGGCATCTAGTTGAGGAGACTAAACTGAAAGTTTCTTATGTTTGCTCCACCACGACAA 364
Query 584 CCATCACCGGTTCACGAAGGATCTGAAGAGGGTT 617
| |||||| ||||| ||||| | ||||||||||
Sbjct 365 C-ATCACCAATTCACCAAGGACCAGAAGAGGGTT 397
> Ahg899704 jgi|Araly1|899704|Al_scaffold_0004_354
Length=660
Score = 372 bits (201), Expect = 4e-102
Identities = 333/396 (84%), Gaps = 12/396 (3%)
Strand=Plus/Plus
Query 177 GCGATCTGATCGG-GATGAGTAACAGCGAGCTTCTCACCGTCGAGCCTCTCG-ATCTTCA 234
||||||| || || |||| |||||| ||||||||||| |||||||| | | | |||||
Sbjct 264 GCGATCTTAT-GGAGATG-GTAACAACGAGCTTCTCAAAATCGAGCCTAT-GTACCTTCA 320
Query 235 ATTCCCTTTTGAATTGAAGAAGCAGATCTCTTGCTCTCTCTAT-TTGACGAACAAGACCG 293
||||||||||||||||||||||||||| ||||||||||| || |||||||||||||| |
Sbjct 321 ATTCCCTTTTGAATTGAAGAAGCAGATGTCTTGCTCTCT-TAACTTGACGAACAAGACAG 379
Query 294 ACAATAATGTTGCCTTTAAGGTTAAGACGACGAATCCGAAAAAGTATTGTGTTAGGCCTA 353
||||||||| ||||||||||||||||||| ||||||||||| ||||| |||||| |||
Sbjct 380 ACAATAATGGGGCCTTTAAGGTTAAGACGAAAAATCCGAAAAATTATTGCGTTAGGTCTA 439
Query 354 AT-ACTGGAGTTGTTCTCCCGAGGTCTACTTGCGAAGTTCTTGTGACCATGCAAGCTCAA 412
|| | |||| | |||| || | ||| ||||| ||||||||||||| |||||||| |||
Sbjct 440 ATTA-TGGACTAATTCTTCCAAAGTCAACTTGTAAAGTTCTTGTGACAATGCAAGCCCAA 498
Query 413 AAGGAAGCTCCT--TCC-GATATGCAGTGCAAGGACAAGTTTCTGCTTCAAGGTGTGATA 469
||||||| || | | | ||||||||| |||| || |||||| || ||||| |||| |||
Sbjct 499 AAGGAAGTTCTTAATTCTGATATGCAGAGCAATGAAAAGTTTATGATTCAAAGTGTAATA 558
Query 470 GCTAGTCCTGGTGTCACAGCCAAGGAAGTTACTCCTGAGATGTTTAGCAAAGAGGCTGGA 529
|||||||||| ||||||||||| |||||||||| ||||| |||||| ||||| | ||
Sbjct 559 GCTAGTCCTGCAGTCACAGCCAAAGAAGTTACTCGTGAGACGTTTAGGAAAGAATCAGGG 618
Query 530 CATCGAGTTGAGGAAACTAAACTGAGAGTTACTTAT 565
|||| ||||||||| |||||||||| ||||||||||
Sbjct 619 CATCTAGTTGAGGAGACTAAACTGAAAGTTACTTAT 654
> Ahg899703 jgi|Araly1|899703|Al_scaffold_0004_353
Length=660
Score = 372 bits (201), Expect = 4e-102
Identities = 333/396 (84%), Gaps = 12/396 (3%)
Strand=Plus/Plus
Query 177 GCGATCTGATCGG-GATGAGTAACAGCGAGCTTCTCACCGTCGAGCCTCTCG-ATCTTCA 234
||||||| || || |||| |||||| ||||||||||| |||||||| | | | |||||
Sbjct 264 GCGATCTTAT-GGAGATG-GTAACAACGAGCTTCTCAAAATCGAGCCTAT-GTACCTTCA 320
Query 235 ATTCCCTTTTGAATTGAAGAAGCAGATCTCTTGCTCTCTCTAT-TTGACGAACAAGACCG 293
||||||||||||||||||||||||||| ||||||||||| || |||||||||||||| |
Sbjct 321 ATTCCCTTTTGAATTGAAGAAGCAGATGTCTTGCTCTCT-TAACTTGACGAACAAGACAG 379
Query 294 ACAATAATGTTGCCTTTAAGGTTAAGACGACGAATCCGAAAAAGTATTGTGTTAGGCCTA 353
||||||||| ||||||||||||||||||| ||||||||||| ||||| |||||| |||
Sbjct 380 ACAATAATGGGGCCTTTAAGGTTAAGACGAAAAATCCGAAAAATTATTGCGTTAGGTCTA 439
Query 354 AT-ACTGGAGTTGTTCTCCCGAGGTCTACTTGCGAAGTTCTTGTGACCATGCAAGCTCAA 412
|| | |||| | |||| || | ||| ||||| ||||||||||||| |||||||| |||
Sbjct 440 ATTA-TGGACTAATTCTTCCAAAGTCAACTTGTAAAGTTCTTGTGACAATGCAAGCCCAA 498
Query 413 AAGGAAGCTCCT--TCC-GATATGCAGTGCAAGGACAAGTTTCTGCTTCAAGGTGTGATA 469
||||||| || | | | ||||||||| |||| || |||||| || ||||| |||| |||
Sbjct 499 AAGGAAGTTCTTAATTCTGATATGCAGAGCAATGAAAAGTTTATGATTCAAAGTGTAATA 558
Query 470 GCTAGTCCTGGTGTCACAGCCAAGGAAGTTACTCCTGAGATGTTTAGCAAAGAGGCTGGA 529
|||||||||| ||||||||||| |||||||||| ||||| |||||| ||||| | ||
Sbjct 559 GCTAGTCCTGCAGTCACAGCCAAAGAAGTTACTCGTGAGACGTTTAGGAAAGAATCAGGG 618
Query 530 CATCGAGTTGAGGAAACTAAACTGAGAGTTACTTAT 565
|||| ||||||||| |||||||||| ||||||||||
Sbjct 619 CATCTAGTTGAGGAGACTAAACTGAAAGTTACTTAT 654
> Ahg932384 jgi|Araly1|932384|scaffold_400372.1
Length=289
Score = 207 bits (112), Expect = 1e-52
Identities = 181/214 (85%), Gaps = 6/214 (3%)
Strand=Plus/Plus
Query 185 ATCGGGATGAGTAACAGCGAGCTTCTCACCGTCGAGCCTCTCG-ATCTTCAATTCCCTTT 243
|||| ||||||||||| ||||||||||| |||||||| | | | ||||||||||||||
Sbjct 15 ATCGAGATGAGTAACAACGAGCTTCTCAAAATCGAGCCTAT-GTACCTTCAATTCCCTTT 73
Query 244 TGAATTGAAGAAGCAGATCTCTTGCTCTCTCTATTT-GACGAACAAGACCGACAATAATG 302
|||||||||||||||||| ||||||||||| || | |||||||||||| | |||||| |
Sbjct 74 TGAATTGAAGAAGCAGATGTCTTGCTCTCT-TAACTCGACGAACAAGACAGCCAATAACG 132
Query 303 TTGCCTTTAAGGTTAAGACGACGAATCCGAAAAAGTATTGTGTTAGGCCTAAT-ACTGGA 361
| |||||||||||||||||||| ||||||||||| ||||| |||||||||||| | | ||
Sbjct 133 TGGCCTTTAAGGTTAAGACGACAAATCCGAAAAATTATTGCGTTAGGCCTAATTA-TAGA 191
Query 362 GTTGTTCTCCCGAGGTCTACTTGCGAAGTTCTTG 395
| |||| || | ||| ||||| ||| ||||||
Sbjct 192 CTAATTCTTCCAAAGTCGACTTGTGAAATTCTTG 225
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45061287894
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5