BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G60630.1 Length=2244 Score E Sequences producing significant alignments: (Bits) Value Ahg486537 jgi|Araly1|486537|fgenesh2_kg.5__2529__AT3G60630.1 3217 0.0 Ahg483651 jgi|Araly1|483651|fgenesh2_kg.4__2711__AT2G45160.1 580 1e-164 > Ahg486537 jgi|Araly1|486537|fgenesh2_kg.5__2529__AT3G60630.1 Length=2195 Score = 3217 bits (1742), Expect = 0.0 Identities = 1920/2005 (96%), Gaps = 15/2005 (1%) Strand=Plus/Plus Query 233 AGATTGGTCATGCCCCTGCCCTTTGAGCAATTTCAAGGGAAGGGGGTTCTGGGTTTCTTA 292 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 199 AGATTGGTCATGCCCCTGCCCTTTGAGCAATTTCAAGGGAAGGGGGTTCTGGGTTTCTTA 258 Query 293 GATTCTTCTTCTTCTCCGGGATACAAAATCTGGGCTAATCCAGAGAAGCTCCATGGACGA 352 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 259 GATTCTTCTTCTTCTCCGGGATACAAAATCTGGGCTAATCCAGAGAAACTCCATGGACGA 318 Query 353 GTAGAAGAAGATCTCTGCTTTGTTGTCAACAATGGTGGTTTCTCGGAGCCGACGTCTGTT 412 ||||| ||||||||||||||| |||| ||||||||||||||||||||||||||||||||| Sbjct 319 GTAGACGAAGATCTCTGCTTTATTGTTAACAATGGTGGTTTCTCGGAGCCGACGTCTGTT 378 Query 413 TTAGACTCTGTTAGAAGTCCAAGCCCTTTCGTCTCTTCTTCAACCACCACGCTGTCTTCT 472 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 379 TTAGACTCTGTTAGAAGTCCAAGCCCTTTCGTCTCTTCTTCAACCACCACGCTGTCTTCT 438 Query 473 TCTCACGGTGGTCCCAGCGGCGGCGGCGCTGCTGCTGCTACTTTTTCCGGCGCCGATGGG 532 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 439 TCTCACGGTGGTCCCAGCGGCGGCGGCGCTGCTGCTGCTACTTTTTCCGGCGCCGATGGG 498 Query 533 AAATGCGACCAAATGGGTTTCGAGGATCTCGATGGTGTTCTCTCCGGTGGCTCGCCGGGA 592 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 499 AAATGCGAACAAATGGGTTTCGAGGATCTCGATGGTGTTCTCTCCGGTGGCTCGCCGGGA 558 Query 593 CAAGAACAGAGTATTTTTAGATTAATCATGGCTGGCGATGTAGTGGATCCGGGTTCGGAG 652 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||| Sbjct 559 CAAGAACAGAGTATTTTTAGATTAATCATGGCTGGTGATGTAGTGGATCCGGGTTCTGAG 618 Query 653 TTTGTGGGTTTCGACATCGGTTCTGGATCCGACCCGGTTATTGATAATCCTAATCCACTC 712 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 619 TTTGTGGGTTTCGACACCGGTTCTGGATCCGACCCGGTTATTGATAATCCTAATCCACTC 678 Query 713 TTTGGATATGGCTTCCCTTTTCAAAACGCACCGGAAGAAGAAAAGTTTCAGATTTCAATA 772 ||||| ||||||||||||||||| || ||||||||||||| |||||||||||||||||| Sbjct 679 TTTGGCTATGGCTTCCCTTTTCACGACCCACCGGAAGAAGAGAAGTTTCAGATTTCAATA 738 Query 773 AACCCAAATCCGGGTTTCTTCTCGGATCCTCCGTCGTCTCCTCCTGCGAAACGGCTCAAT 832 |||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 739 AACCCAAATCCGAGTTTCTTCTCGGATCCTCCGTCGTCTCCTCCTGCGAAAAGGCTCAAT 798 Query 833 TCGGGTCAACCCGGATCTCAACACCTCCA------GTGGGTTTTCCCGTTCTCGGATCCG 886 ||||||||||||||||||||||||| ||| ||||| ||||||||||||||||||| Sbjct 799 TCGGGTCAACCCGGATCTCAACACCACCACCAACAGTGGGGTTTCCCGTTCTCGGATCCG 858 Query 887 GGTCACGAATCTCACGACCCGTTTCTCACACCGCCAAAGATAGCCGGAGAAGACCAAAAC 946 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 859 GGTCACGAATCTCACGACCCGTTTCTCACGCCGCCAAAGATAGCCGGAGAAGACCAAAAC 918 Query 947 GACCAAGACCAGTCAGCGGTAATCATCGACCAGCTATTCTCTGCGGCGGCGGAGCTCACC 1006 ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 919 GACCAAGACCAGTCAACGGTAATCATCGACCAGCTATTCTCTGCGGCGGCGGAGCTCACA 978 Query 1007 ACAAACGGCGGAGATAACAATCCCGTTCTCGCGCAAGGGATATTGGCGCGGCTCAATCAC 1066 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 979 ACAAACGGCGGAGATAACAATCCCGTTCTCGCGCAAGGGATATTGGCGCGGCTCAATCAC 1038 Query 1067 AACCTTAACAACAACAACGACGACACTAACAACAATCCTAAACCTCCGTTCCACAGAGCA 1126 ||||||||||||||| ||| || |||||||||||||||||||||||| | |||||| Sbjct 1039 AACCTTAACAACAAC---GAC-AC--TAACAACAATCCTAAACCTCCGTTTCGTAGAGCA 1092 Query 1127 GCTTCGTATATAACAGAAGCTCTTCACTCTCTCCTTCAAGACTCATCATTATCACCACCG 1186 |||||||||||||| ||||||||||||||||| |||||||||||||||| |||||||||| Sbjct 1093 GCTTCGTATATAACCGAAGCTCTTCACTCTCTTCTTCAAGACTCATCATCATCACCACCG 1152 Query 1187 TCTCTCTCACCTCCTCAAAACCTAATCTTTCGGATCGCAGCTTACAGAGCTTTCTCAGAA 1246 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||| Sbjct 1153 TCTCTCTCACCTCCTCAAAACCTAATCTTTCGAATCGCAGCTTACAGAGCTTTCTCGGAA 1212 Query 1247 ACGTCACCGTTTCTTCAATTCGTCAACTTCACAGCAAACCAAACGATTCTCGAGTCATTC 1306 |||||||||||||||||||||||||| |||||||||||||| |||||||| ||||| ||| Sbjct 1213 ACGTCACCGTTTCTTCAATTCGTCAATTTCACAGCAAACCAGACGATTCTTGAGTCCTTC 1272 Query 1307 GAAGGGTTTGATCGGATCCACATTGTCGATTTCGATATCGGTTATGGAGGTCAATGGGCG 1366 ||||| |||||||| ||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 1273 GAAGGATTTGATCGAATCCACATTGTCGATTTCGATATCGGTTACGGAGGTCAATGGGCG 1332 Query 1367 TCTCTGATTCAAGAGCTCGCCGGAAAAAGAAACAGATCTTCATCAGCTCCGTCGCTAAAG 1426 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 1333 TCTCTGATTCAAGAGCTCGCCGGAAAAAGAAACAGATCTTCGTCAGCTCCGTCGCTAAAG 1392 Query 1427 ATTACAGCTTTCGCTTCTCCTTCAACTGTCTCCGACGAATTCGAGCTCCGATTCACTGAA 1486 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1393 ATTACAGCTTTCGCTTCTCCTTCAACTGTCTCCGACGAATTCGAGCTCCGATTCACTGAA 1452 Query 1487 GAAAATCTCAGAAGCTTCGCCGGCGAAACAGGTGTCTCCTTCGAAATCGAGCTCTTAAAC 1546 |||||||||||||| ||||| || ||||| || ||||||||||||||||||||||| ||| Sbjct 1453 GAAAATCTCAGAAGTTTCGCTGGAGAAACCGGAGTCTCCTTCGAAATCGAGCTCTTGAAC 1512 Query 1547 ATGGAGATTCTCTTGAATCCAACTTATTGGCCACTGTCTTTATTCCGATCATCGGAGAAA 1606 ||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||| Sbjct 1513 ATGGAGATTCTCTTGAATCCAACTTATTGGCCACTCTCTTTACTCCGATCATCGGAGAAA 1572 Query 1607 GAAGCAATCGCTGTGAATCTCCCAATCAGCTCCATGGTCTCCGGTTACCTCCCATTGATA 1666 |||||||| ||||||||||| |||||||||||||| |||||||||||||||||||||||| Sbjct 1573 GAAGCAATTGCTGTGAATCTTCCAATCAGCTCCATTGTCTCCGGTTACCTCCCATTGATA 1632 Query 1667 CTTCGTTTCCTCAAGCAAATCTCACCAAACGTCGTCGTTTGCTCAGACAGAAGCTGCGAC 1726 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 1633 CTTCGTTTCCTCAAGCAAATCTCACCAAACGTCGTCGTTTGCTCAGATAGAAGCTGCGAC 1692 Query 1727 CGTAACAACGACGCGCCGTTCCCTAACGGTGTGATTAACGCGCTTCAGTACTACACATCT 1786 || ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 1693 CGCAACAACGACGCGCCGTTCCCTAACGGTGTGATTAACGCGCTCCAGTACTACACATCT 1752 Query 1787 CTGCTCGAGTCTCTCGACTCTGGGAATCTGAATAATGCGGAAGCTGCTACGAGTATTGAG 1846 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 1753 CTGCTCGAGTCTCTCGACTCTGGGAATCTGAATAATGCGGAAGCTGCTTCGAGTATTGAG 1812 Query 1847 AGGTTTTGTGTGCAACCGTCGATACAGAAACTGTTGACGAATCGTTACCGTTGGATGGAG 1906 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 1813 AGGTTTTGTGTGCAACCGTCGATACAGAAACTGTTGACGAATCGTTACCGTTGGATGCAG 1872 Query 1907 AGATCACCGCCGTGGAGAAGCTTATTTGGGCAATGTGGGTTTACTCCTGTGACGCTGAGT 1966 ||||| ||||||||||||||||| |||||||||||||||||| |||| |||||||||||| Sbjct 1873 AGATCGCCGCCGTGGAGAAGCTTGTTTGGGCAATGTGGGTTTTCTCCGGTGACGCTGAGT 1932 Query 1967 CAGACGGCGGAGACACAAGCGGAGTATTTGTTGCAGAGGAATCCAATGAGAGGGTTTCAC 2026 ||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||| Sbjct 1933 CAGACGGCGGAGACACAGGCGGAGTATTTGTTGCAGAGGAATCCGATGAGAGGGTTTCAC 1992 Query 2027 TTGGAGAAGAGACAGTCTTCGTCGCCTTCACTTGTCTTGTGTTGGCAGAGGAAAGAACTT 2086 ||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||| Sbjct 1993 TTGGAGAAGAGACAGTCATCGTCGTCTTCACTTGTCTTGTGTTGGCAGAGGAAAGAACTT 2052 Query 2087 GTTACTGTCTCAGCTTGGAAATGTTAAGACGAAAAAGGAGGATATTTTCACGGTTTAATT 2146 ||||||||||||||||||||||||| ||| |||||| | ||||||| || |||| |||| Sbjct 2053 GTTACTGTCTCAGCTTGGAAATGTTGAGAGGAAAAATTATGATATTT-CAGGGTTCAATT 2111 Query 2147 TTCTTTT-TGTAGCTTTTCAATTTGGGTTAGATCACGTTTTAATATGTTTGATTGTGATG 2205 ||||||| | |||||||| ||||||||||| |||| |||||||||||||||||||||||| Sbjct 2112 TTCTTTTCT-TAGCTTTTTAATTTGGGTTATATCATGTTTTAATATGTTTGATTGTGATG 2170 Query 2206 TTAACCAATCAAATGATATATATAT 2230 ||||||||||||||||||||||||| Sbjct 2171 TTAACCAATCAAATGATATATATAT 2195 Score = 327 bits (177), Expect = 2e-88 Identities = 192/199 (96%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 1 AAAAGAGAGCATTTTTTATGAAGATCATCACTTTGGAATGTTGTTGGAATCATCCAGAGT 60 |||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||| Sbjct 1 AAAAGAGAGCATTTTTGATGAAGATCATCACTTTGGAATGTTGTTGCAATCATCCAGAGT 60 Query 61 CAATATACATAAGCAAC-GAGAAGAAAGATTGTTATTAATACCGAGTGTGAGATAATGTG 119 |||||||||||||| || | ||||||||||||||||||| | |||||||||||||||||| Sbjct 61 CAATATACATAAGC-ACAGTGAAGAAAGATTGTTATTAACAACGAGTGTGAGATAATGTG 119 Query 120 GGCGCCAATTTCAGTTTCAAGCTTTCATCTTCGTCTTCCTCTTTAAGTTCTGAGATCTAG 179 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 120 GGCGCCAATTTCAGTTTCAAGCTTTCATCTTCGTCTTCCTCTTTAAGTTCTGAGATCTAG 179 Query 180 GGTTTTTCTGGGTTTCTTT 198 ||||||||||||||||||| Sbjct 180 GGTTTTTCTGGGTTTCTTT 198 > Ahg483651 jgi|Araly1|483651|fgenesh2_kg.4__2711__AT2G45160.1 Length=2185 Score = 580 bits (314), Expect = 1e-164 Identities = 728/917 (79%), Gaps = 71/917 (8%) Strand=Plus/Plus Query 1220 ATCGCAGCTTACAGAGCTTTCTCAGAAACGTCACCGTTTCTTCAATTCGTCAACTTCACA 1279 ||||| ||||||||| | ||||| ||||| || |||||||| |||||||| ||||||||| Sbjct 1087 ATCGCCGCTTACAGATCCTTCTCCGAAACCTCGCCGTTTCTCCAATTCGTTAACTTCACA 1146 Query 1280 GCAAACCAAACGATTCTCGAGTCAT---TCG-A--AGGGTTTGATCGGATCCACATTGTC 1333 || || ||| ||||||| ||||| | || | |||||||||||| ||||||||| || Sbjct 1147 GCGAATCAATCGATTCTTGAGTCCTGCAACGAATCAGGGTTTGATCGAATCCACATTATC 1206 Query 1334 GATTTCGATATCGGTTATGGAGGTCAATGGGCGTCTCTGATTCAAGAGCTCG---CCGGA 1390 |||||||| | || |||||||| |||||| | ||||| || ||||| |||| ||||| Sbjct 1207 GATTTCGACGTTGGATATGGAGGACAATGGTCATCTCTAATGCAAGAACTCGCCCCCGGA 1266 Query 1391 AAAAGAA-ACAGATCTTCATCAGC-TCCGTCGCTAAAGATT-ACAG-CTTTCGCT--T-C 1443 ||||| | ||| || ||| | | || || || ||| |||| |||| ||| | | Sbjct 1267 GGAAGAAGA-AGA--AACA-GAGCAT-CATCTCTGAA-ATTAACAGTCTTT-GCTCCTCC 1319 Query 1444 TCCTTCAACTGTCTCCGACGAATTCGAGCTCCGATTCACTGAAGAAAATCTCAGAAGC-T 1502 ||||||||| ||||||||||| |||||||||||||| || || |||||||||| || | | Sbjct 1320 TCCTTCAACAGTCTCCGACGAGTTCGAGCTCCGATTTACGGAGGAAAATCTCA-AAACTT 1378 Query 1503 TCGCCGGCGAA-AC-AGGTGTCTCCTTCGAAATCGAGCT-CTTAAACATGGAGATTC-TC 1558 | ||||| ||| | || | || | ||||| |||||| | | ||| ||| ||| ||| || Sbjct 1379 TTGCCGGAGAAGTCAAGAT-TC-CGTTCGAGATCGAGTTGC-TAAGCATCGAGCTTCTTC 1435 Query 1559 TTGAATCCAACTTATTGGCCACTGTCTTTATTCCGATCATCGGAGAAAGAAGCAATCGCT 1618 | || ||| |||||||||||| ||| | |||| |||||||| |||||||||||||| Sbjct 1436 -TAAACCCATCTTATTGGCCAC--TCTCT-CTCCGTTCATCGGAAAAAGAAGCAATCGCA 1491 Query 1619 GTGAATC-TCCCAATCAGCTCCATGGTCTCCGGTTACCTCCCATTGATACTTCGTTTCCT 1677 ||||||| |||| | | |||| | | |||||||||||| ||||| || || |||||||| Sbjct 1492 GTGAATCTTCCC-GTAAACTCCGTCGCCTCCGGTTACCTTCCATTAATCCTCCGTTTCCT 1550 Query 1678 CAAGCAAATCTCACCAAACGTCGTCGTTTGCTCAGACAGAAGCTGCGACCGTAACAACGA 1737 ||| |||||||||||||||||||||||||||||||||||| | || ||||||||| || Sbjct 1551 CAAACAAATCTCACCAAACGTCGTCGTTTGCTCAGACAGAGGATGTGACCGTAAC---GA 1607 Query 1738 CGCGCCGTTCCCTAACGGTGTGATTAACGCGCTTCAGTACTACAC-ATCTCTGCTCGAGT 1796 ||||||||| || |||| ||||| |||||||||||||| |||| | |||||| |||| Sbjct 1608 CGCGCCGTTTCCAAACGCCGTGATCCACGCGCTTCAGTACCACACTAG-TCTGCTTGAGT 1666 Query 1797 CTCTCGACT-CTGGGAATCTGAAT-AATG-CGGAAGCTGCTACGAGTATTGAGAGGTTTT 1853 |||| || | || |||| ||| || | || | | | | ||||| |||||||||| Sbjct 1667 CTCTGGA-TGCT---AATCAGAACCAA-GACG-AT--T-C-A--AGTATCGAGAGGTTTT 1714 Query 1854 GTGTGCAACCGTCGATACAGAAACTGTTGACGAATCGTTACCGTTGGATGGAGAGATCAC 1913 | || ||||| ||||| |||| ||||||| ||| || |||||||||| || ||||| | Sbjct 1715 GGGTTCAACCATCGATTGAGAAGCTGTTGATGAAACGACACCGTTGGATTGAAAGATCTC 1774 Query 1914 CGCCGTGGAGAAGCTTATTTGGGCAATGTGGGTTTACTCCTGTGACGC-TGAGTCAGACG 1972 | |||||||||||||| ||| |||||||||||| |||| | || | ||||||||||| Sbjct 1775 CACCGTGGAGAAGCTTGTTTACACAATGTGGGTTTTCTCCGGCGA-GTATGAGTCAGACG 1833 Query 1973 GCGGAGACACAAGCGGAGTATTTGTTGCAGAGGAATCCAATGAGAGGGTTTCAC-TTGGA 2031 |||||| | || ||||||| |||||||||||||||||| |||||||||||||| ||| | Sbjct 1834 GCGGAGGCTCAGGCGGAGTGTTTGTTGCAGAGGAATCCGGTGAGAGGGTTTCACGTTG-A 1892 Query 2032 GAAGAGACAGTCTTCGTCGCCTTCACTTGTCTTGTGTTGGCAGAGGAAAGAACTTGTTAC 2091 ||| ||||||||||| ||||||| |||||||||| ||||||||||||||||| Sbjct 1893 GAAAAGACAGTCTTC---------ACTTGTCATGTGTTGGCAAAGGAAAGAACTTGTTAC 1943 Query 2092 TGTCTCAGCTTGGAAAT 2108 |||||| |||||||||| Sbjct 1944 TGTCTCTGCTTGGAAAT 1960 Score = 71.3 bits (38), Expect = 3e-11 Identities = 38/38 (100%), Gaps = 0/38 (0%) Strand=Plus/Plus Query 1029 CCGTTCTCGCGCAAGGGATATTGGCGCGGCTCAATCAC 1066 |||||||||||||||||||||||||||||||||||||| Sbjct 920 CCGTTCTCGCGCAAGGGATATTGGCGCGGCTCAATCAC 957 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 84484163410 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5