BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G60660.1
Length=1200
Score E
Sequences producing significant alignments: (Bits) Value
Ahg486539 jgi|Araly1|486539|fgenesh2_kg.5__2531__AT3G60660.1 1681 0.0
> Ahg486539 jgi|Araly1|486539|fgenesh2_kg.5__2531__AT3G60660.1
Length=1138
Score = 1681 bits (910), Expect = 0.0
Identities = 1082/1161 (93%), Gaps = 27/1161 (2%)
Strand=Plus/Plus
Query 44 TTGGGAGATTGAGAGAGGTTAGTGAAGAATGGAGGGAAATCAAGCTGGATCTTCTCTAGA 103
||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct 1 TTGGGAGATTGAGAGAGATTCGTGAAGAATGGAGGGAAATCAAGCTGGATCTTCTCTAGA 60
Query 104 TTCGTTGATTGCTTCTTTCAATAAACGAATCGGCGAATTGCAGGAACTCGTCATCGCCAG 163
|||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 61 CTCGTTGATTGCTTCGTTCAATAAACGAATCTGCGAATTGCAGGAACTCGTCATCGCCAG 120
Query 164 AAACATGTATCCTGCAAGTACCATCCCGGATTTATCGGCGATTGACACAGCGTTGAGCTC 223
|||||||||||| || |||||||||||||||||||||||||||||||| |||||||||||
Sbjct 121 AAACATGTATCCGGCGAGTACCATCCCGGATTTATCGGCGATTGACACGGCGTTGAGCTC 180
Query 224 AATGGAGCTTCAGGTACAATCGATCAAGGACCGATTACGTGAAGAAACCGAAGCTATTCC 283
||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct 181 AATGGAGCTTCAGGTACAATCCATCAAGGACCGGTTACGTGAAGAAACCGAAGCTATTCC 240
Query 284 AAAAGCTAAGAAACTTATAGAGGCATCACTGAAACAACAAGGGAAGTTGCAGAAGATGTC 343
|||||| ||||||||||| ||| ||||||||||||| |||||||| ||||||||||||||
Sbjct 241 AAAAGCCAAGAAACTTATTGAGTCATCACTGAAACAGCAAGGGAAATTGCAGAAGATGTC 300
Query 344 TATTTATGCACCTTCCCATTTTCCTGACAAGGCTACTATGTTGAATTCAGATTTAAATAG 403
||||||||||||||||||| ||||||||| |||||| ||||||||||||||||| |||||
Sbjct 301 TATTTATGCACCTTCCCATATTCCTGACAGGGCTACAATGTTGAATTCAGATTTGAATAG 360
Query 404 ATGTCTGCTCCAAGAGAATGCCAAGCAGTACGAGCAACATTCTACTCTCAGCTCTTTGAA 463
|||| |||||||||| |||||||||||||||||||||||||| | || ||||||||||||
Sbjct 361 ATGTTTGCTCCAAGAAAATGCCAAGCAGTACGAGCAACATTCAATTCCCAGCTCTTTGAA 420
Query 464 ATTTGATGAGGAAGCAGCTGTTTTACCCAAGGAGAAGAAGGGTCGCGGGTCTCCTCCCCT 523
|||||||||||||| |||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct 421 ATTTGATGAGGAAGTAGCTGTTTTACCCAAGGAAAAGAAGGGTCGCGGGTCTCCTCCGCT 480
Query 524 TTGGTACATAACTGTTGAGGAACTCAATTCACTCTCATCATACATGAGAGGAAGGCTCAC 583
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 TTGGTACATCACTGTTGAGGAACTCAATTCACTCTCATCATACATGAGAGGAAGGCTCAC 540
Query 584 CCTTGAGAAAGTGAATGCTGCTATCAATGACATGGCCTCATATGCTGAAGCAAATGCTCA 643
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 GCTTGAAAAAGTGAATGCTGCTATCAATGACATGGCCTCATATGCTGAAGCAAATGCTCA 600
Query 644 TCTTATTGCAGCCTCAAAACAGAAGCTAGCGGAAAATCTCTGGGAGAAAGCACTTAAACT 703
|||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||
Sbjct 601 TCTTATTGCAGCCTCAAAACAGAAGCCGGCGGAAAATCTCTGGGAGAAAGCACTGAAACT 660
Query 704 ACGAGATATCGTAACAGAGCAAGCAGTGAAGGGCAAACATTTCTTTCTTGAAACTGACAT 763
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 ACGAGATATCGTAACAGAGCAAGCAGTGAAGGGCAAACATTTCTTTCTTGAAACTGACAT 720
Query 764 GAAGGGACCAAGTTTGAAACTAGACAACACAGGAAAAGCAATACTTACTGTTCTTCGCCA 823
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct 721 GAAGGGACCAAGTTTGAAACTAGACAACACAGGAAAAGCAATACTCACTGTTCTTCGTCA 780
Query 824 CCTTGGTCGTATTAGTGAGACTCGCATTGGACAAAACCGCGTCATCATTCTTATGAAGCC 883
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 781 CCTTGGTCGTATCAGTGAGACTCGCATTGGACAAAACCGCGTCATCATTCTTATGAAGCC 840
Query 884 TCACTAGAAACCAACCAACTTGCCTCAAGTAAGTTGTTCATTTTCACAA-GCGTAA-GGG 941
||||||||||||||| ||||| |||||||| ||||||||||| ||| | |||| |||
Sbjct 841 TCACTAGAAACCAAC----TTGCCGCAAGTAAGCTGTTCATTTTCTCAAAGAGTAAAGGG 896
Query 942 GTAATTCCGTCATTTTTCAAT-AGTTTCTTGCTTCTTCTGAGCTCCTTGTACCATAGAAT 1000
|||||||||||||||| || | | ||||||||||| | | | ||||||
Sbjct 897 GTAATTCCGTCATTTTCCA-TCAATTTCTTGCTTC-----A--T--T-GTACCA------ 939
Query 1001 CATAGAAGGTCTACTGGTCCCTTAAACATCATTAAGCCTTAATCTTAATCCTTAAGACCG 1060
|| |||||||||||||||| ||||||| |||||||||||||||||||| ||||||||||
Sbjct 940 CA--GAAGGTCTACTGGTCCTTTAAACACCATTAAGCCTTAATCTTAATTCTTAAGACCG 997
Query 1061 GCCCGCCTGACAGGCCCAGCTAGGCCCAGGATTTGAATTTATAATATGGACAAAAATGTT 1120
| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 998 GTCCGCCTGACAGGCCCAGCTAGGCCCAGCATTTGAATTTATAATATGGACAAAAATGTT 1057
Query 1121 TAATGCAATTT-TCACATTTGCATAAAAGTAGAAAAACTCGATTTCCGTTATTTTCATAA 1179
||||||||||| ||| |||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1058 TAATGCAATTTCTCATATTTTCATAAAAGTAGAAAAACTCGATTTCCGTTATTTTCATAA 1117
Query 1180 TATTAAAAAAGCAATTTCTCT 1200
||||| ||||| ||||| |||
Sbjct 1118 TATTATAAAAGTAATTTTTCT 1138
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44794427475
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5