BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G60900.1 Length=1880 Score E Sequences producing significant alignments: (Bits) Value Ahg486566 jgi|Araly1|486566|fgenesh2_kg.5__2558__AT3G60900.1 2407 0.0 Ahg483684 jgi|Araly1|483684|fgenesh2_kg.4__2744__AT2G45470.1 1142 0.0 > Ahg486566 jgi|Araly1|486566|fgenesh2_kg.5__2558__AT3G60900.1 Length=1841 Score = 2407 bits (1303), Expect = 0.0 Identities = 1702/1883 (90%), Gaps = 74/1883 (4%) Strand=Plus/Plus Query 24 TTTTTATCTGAGTGCCTTTTACAAAATTTTGGATGATTATCTAATGAGCATCCATAAATA 83 |||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||| Sbjct 3 TTTTTATCTGAGTGCCTTTTACAAAATTTTGGATGATTATCTAATGAGCATCAACAAATA 62 Query 84 AGCTCAAATTTTAGTT-AGCTACTTGACCATGGTTAACTCTAACAAGGATGAT-A-AATT 140 | |||||| |||||| ||||| ||||||||||||||||||| | ||| || | ||| Sbjct 63 AACTCAAA--TTAGTTAAGCTAGTTGACCATGGTTAACTCTAGC--TGATAATCATAATG 118 Query 141 GATAATGATATAACGGTTCGGTTCGGTTGCTTTTGGAAGAGGACGAACCATA-AAGAAAG 199 |||||||||||||||||| | | | |||||| | | ||||||||||| || |||| Sbjct 119 GATAATGATATAACGGTT--G--C---T--TTTTGG-A-A-GACGAACCATACAA-AAAG 165 Query 200 AAGCTCAAAGCCCACCCATTTTCGTGATTACAGGCTTTTTAGCAAAAGGAAGC-AGCACG 258 |||| ||||| ||||||||||||||| ||| |||||||| ||| |||| |||||| Sbjct 166 AAGCCCAAAG----CCCATTTTCGTGATTTCAGACTTTTTAG--AAA--AAGCAAGCACG 217 Query 259 TGTTCTCAAATTAACCATAGTTAACTCTTCAATATAACCATGGTTAACATTTAACctctt 318 |||||| | |||||||||||||||||||| | ||||||||||||||| |||||||||||| Sbjct 218 TGTTCTTATATTAACCATAGTTAACTCTTTAGTATAACCATGGTTAATATTTAACCTCTT 277 Query 319 cttcttctta-t---taacttca----tcactc-tctttgtcttctcactttctcttctc 369 |||||||||| | |||||||| |||||| | |||||||||||||||| |||||| Sbjct 278 CTTCTTCTTATTACATAACTTCATTTCTCACTCATAATTGTCTTCTCACTTTCACTTCTC 337 Query 370 CACAGTTCAACTCAACCTTCCAAATTCCAATGGCGACATCACGAGCTTTCACTCTCTTCG 429 |||||||| ||| |||| ||||||||||||||||| ||||||||||||| ||||||||| Sbjct 338 CACAGTTCGACTTAACCGTCCAAATTCCAATGGCGGTATCACGAGCTTTCTCTCTCTTCG 397 Query 430 CTTTCACATTATCTCTCCTCACCGTAGCTTCTACCGTCTCCGGCCATAACATTACTCAAA 489 | ||||| ||||||||||| |||| |||| ||||||||||||||||||||| ||||||| Sbjct 398 CATTCACTTTATCTCTCCTTGCCGTCGCTTATACCGTCTCCGGCCATAACATCACTCAAA 457 Query 490 TCCTCTCTGATACGCCGGAATATTCCTCATTCAACAACTACCTTTCTCAAACAAAACTCG 549 |||| || |||||||||||||||||||||||||||| |||||||||||| ||||| |||| Sbjct 458 TCCTATCCGATACGCCGGAATATTCCTCATTCAACAGCTACCTTTCTCAGACAAAGCTCG 517 Query 550 CCGACGAAATCAACAGCCGCACTACAATCACCGTCCTTGTTCTCAACAATGGCGCAATGT 609 ||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||| Sbjct 518 CCGACGAAATCAACAGCCGCACTACCATCACCGTCCTTGTCCTCAACAATGGCGCAATGT 577 Query 610 CTTCCCTCGCCGGAAAACACCCACTCTCCGTCGTCAAAAATGCTCTCAGCCTCCTCGTCC 669 || |||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 578 CTGCCCTCGCCGGAAAACATCCACTCTCCGTCGTCAAAAATGCTCTCAGCCTCCTCGTCC 637 Query 670 TCCTCGACTACTACGATCCTTTAAAACTCCATCAGCTCTCTAAAGGCACAACTCTCACCA 729 ||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 638 TCCTCGATTACTACGATCCTTTAAAACTCCATCAGCTCTCTAAAGGCTCAACTCTCACCA 697 Query 730 CCACGCTTTACCAAACCACCGGACACGCTCTCGGGAACCTAGGATTCGTTAACGTCACCG 789 |||||||||||||||||||||||||||||| ||| |||||||||||||| |||||||||| Sbjct 698 CCACGCTTTACCAAACCACCGGACACGCTCCCGGAAACCTAGGATTCGTCAACGTCACCG 757 Query 790 ATCTCAAAGGAGGCAAAGTCGGCTTTGGCTCCGCCGCTCCTGGCTCCAAGCTCGATTCCT 849 |||||||||||||||||||||| |||||||||||||||||||| |||||||||||||| | Sbjct 758 ATCTCAAAGGAGGCAAAGTCGGATTTGGCTCCGCCGCTCCTGGATCCAAGCTCGATTCTT 817 Query 850 CTTACACCAAATCCGTTAAACAAATCCCTTACAACATCTCCGTTCTCGAAATCAACGCTC 909 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 818 CTTACACCAAATCCGTTAAACAAATCCCTTACAACATCTCCGTTCTCGAAATCAACGCTC 877 Query 910 CGATCATCGCTCCCGGAATCTTAACCGCACCTGCTCCTTCTTCCGCCGGAGTTAGCAACA 969 ||||||||||||||||||||||||||||||||||||||||||||| ||| |||| ||||| Sbjct 878 CGATCATCGCTCCCGGAATCTTAACCGCACCTGCTCCTTCTTCCGGCGGTGTTAACAACA 937 Query 970 TCACCGGACTTCTCGAGAAAGCCGGTTGCAAAACCTTCGCGAATTTGCTCGTATCGAGCG 1029 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 938 TCACCGGACTTCTCGAGAAAGCCGGTTGCAAAACCTTCGCGAATTTGCTCGTATCGAGTG 997 Query 1030 GTGTTATTAAAACATTCGAATCCACCGTTGAAAAAGGCTTGACGGTTTTTGCACCGTCCG 1089 ||||| ||||||| | ||||||||||||||||||||| |||||||||||||||||||||| Sbjct 998 GTGTTCTTAAAACCTACGAATCCACCGTTGAAAAAGGTTTGACGGTTTTTGCACCGTCCG 1057 Query 1090 ATGAAGCTTTTAAAGCTAGAGGTGTACCAGATCTGACGAATCTCACACAAGCTGAGGTGG 1149 |||||||||||||||||| ||||||||||||||||||||| ||||| ||||||||||||| Sbjct 1058 ATGAAGCTTTTAAAGCTAAAGGTGTACCAGATCTGACGAACCTCACGCAAGCTGAGGTGG 1117 Query 1150 TCTCGCTCCTAGAGTATCACGCCCTCGCTGAATACAAACCCAAAGGATCGTTAAAGACTA 1209 |||||||||||||||||||||||||||||||||||||||||||||||||||| |||| || Sbjct 1118 TCTCGCTCCTAGAGTATCACGCCCTCGCTGAATACAAACCCAAAGGATCGTTGAAGAATA 1177 Query 1210 ACAAAGACGCTATCTCCACTTTAGCCACTAACGGCGCCGGTAAATACGATTTAACGACGT 1269 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1178 ACAAAGACGCTATCTCCACTTTAGCCACTAACGGCGCCGGTAAATACGATTTAACGACGT 1237 Query 1270 CAACTTCCGGTGACGAGGTTATTCTCCATACCGGCGTTGGTCCGTCGAGACTCGCCGACA 1329 ||||||| || ||||||||||| ||||||||||| ||||||||||||||||||||||||| Sbjct 1238 CAACTTCTGGCGACGAGGTTATCCTCCATACCGGTGTTGGTCCGTCGAGACTCGCCGACA 1297 Query 1330 CGGTGGTCGATGAGACACCTGTTGTTATATTCACTGTGGATAATGTGCTCCTTCCCGCTG 1389 |||||||||||||||||||||| || |||||||| ||||||||||| ||||| ||| | | Sbjct 1298 CGGTGGTCGATGAGACACCTGTCGTGATATTCACGGTGGATAATGTACTCCTCCCCACCG 1357 Query 1390 AGCTTTTCGGAAAATCTTCATCGCCGGCGCCGGCACCGG-A--G---CCAGTGAGTGCAC 1443 ||||||| ||||| ||| |||| |||||||||||||||| | | ||||||||||||| Sbjct 1358 AGCTTTTTGGAAAGTCTCCATCTCCGGCGCCGGCACCGGCACCGGAGCCAGTGAGTGCAC 1417 Query 1444 CGACACCGACCCCGGCTAA-GTCACCGTCTCCTGTGGAAGCACCTTCTCCAACCGCAGCT 1502 |||| ||| | |||||||| | |||||||||| |||||||||||||||||||| |||||| Sbjct 1418 CGACCCCGTCTCCGGCTAATG-CACCGTCTCCAGTGGAAGCACCTTCTCCAACTGCAGCT 1476 Query 1503 TCTCCGCCAGCACCACCGGTGGATGAATCTTCACCGGAAGGAGCTCCGTCAGACTCGCCG 1562 |||||||||||||| ||||||||||||||||| ||||||||||| ||||||||||||||| Sbjct 1477 TCTCCGCCAGCACCTCCGGTGGATGAATCTTCGCCGGAAGGAGCCCCGTCAGACTCGCCG 1536 Query 1563 ACAAGTTCAGAGAACAGTAATGCGAAAAACGCGGCGTTTCACGTTAACGCTCCTGCGTTG 1622 |||||||||||||||||||||||||||||||| ||||||||||| || ||| |||||||| Sbjct 1537 ACAAGTTCAGAGAACAGTAATGCGAAAAACGCAGCGTTTCACGTGAAGGCTTCTGCGTTG 1596 Query 1623 TTCACCGCATTGGTCACTATTGCCGCCACATCTCTCTTGTTATAAACAAAACCTTAATTA 1682 |||||||||||||| || ||||||||||||||||||||| ||||| |||||| |||||| Sbjct 1597 TTCACCGCATTGGTGGCTCTTGCCGCCACATCTCTCTTGTCATAAAAAAAACCGTAATTA 1656 Query 1683 CGAAGACTGCCATTGTCTTCCTTCGACGAGTTTTTATTTCTTTGTGATGCTGTTTGTTAA 1742 |||||||||||||||||| || | || ||||||||| ||||||||||| Sbjct 1657 CGAAGACTGCCATTGTCT-CC--C------TT-------CTTTGTGATTCTGTTTGTTAA 1700 Query 1743 AAACTGGGAATTAGAGTGTTACGGTTTACGTTTAATCTTATTAGTTAATTTAGAATTGGA 1802 | ||||||| ||||||||||| |||||| ||| |||||| |||||||||| || ||||| Sbjct 1701 AGACTGGGA-TTAGAGTGTTAAGGTTTAAGTT-AATCTTTTTAGTTAATTCAGGCTTGGA 1758 Query 1803 TGATTGTTATTGTTTTGTTTTGGT--GT--GTTAGT--T--T-GTAGTAGTGTCGAAATA 1853 |||||||| ||||||||||||||| || ||| || | | |||||||||| |||||| Sbjct 1759 TGATTGTTTTTGTTTTGTTTTGGTCTGTTCGTTTGTAGTAGTAGTAGTAGTGTTGAAATA 1818 Query 1854 TTGAGATCTTCTAATTGACTAGT 1876 |||||||||||||||| |||||| Sbjct 1819 TTGAGATCTTCTAATTAACTAGT 1841 > Ahg483684 jgi|Araly1|483684|fgenesh2_kg.4__2744__AT2G45470.1 Length=1545 Score = 1142 bits (618), Expect = 0.0 Identities = 1053/1261 (84%), Gaps = 38/1261 (3%) Strand=Plus/Plus Query 399 ATGGCGACATCAC-GAGCTT-TCACTCTCTTCGCTTTCACATTATCTCTCCTCACCGTAG 456 |||||| | |||| || ||| |||||| | |||| ||||| || || |||||| |||| | Sbjct 51 ATGGCGGCGTCACAGACCTTCTCACTC-C-TCGCCTTCACTTTTTCCCTCCTCGCCGTCG 108 Query 457 CTTCTACCGTCTCCGGCCATAACATTACTCAAATCCTCTCTGATACGCCGGAATATTCCT 516 |||| ||||| |||| ||||| |||||||||||| ||||| | || || || || | Sbjct 109 CTTCCACCGTGAGTAGCCACAACATCACTCAAATCCTCGCTGATTCTCCTGATTACTCTT 168 Query 517 CATTCAACAACTACCTTTCTCAAACAAAACTCGCCGACGAAATCAACAGCCGCACTACAA 576 | ||||||| |||||||||||| || || ||||||||||| |||||||||||||| || | Sbjct 169 CCTTCAACAGCTACCTTTCTCAGACGAAGCTCGCCGACGAGATCAACAGCCGCACGACGA 228 Query 577 TCACCGTCCTTGTTCTCAACAATGGCGCAATGTCTTCCCTCGCCGGAAAACACCCACTCT 636 | || ||||| || || |||||||||||||||||| | |||||||||||||| ||||||| Sbjct 229 TTACAGTCCTCGTCCTTAACAATGGCGCAATGTCTGCTCTCGCCGGAAAACATCCACTCT 288 Query 637 CCGTCGTCAAAAATGCTCTCAGCCTCCTCGTCCTCCTCGACTACTACGATCCTTTAAAAC 696 ||||| | |||| ||| | ||||||||||| |||||||| ||||||||||| |||||| Sbjct 289 CCGTCATTAAAAGCGCTTTAAGCCTCCTCGTACTCCTCGATTACTACGATCCACTAAAAC 348 Query 697 TCCATC-AGCTCTCTAAAGGCACAACTCTCACCACCACGCTTTACCAAACCACCGGACAC 755 |||| | || |||| ||||||||||||||| ||||||| |||||||||||||||||| || Sbjct 349 TCCA-CAAGATCTCCAAAGGCACAACTCTCTCCACCACACTTTACCAAACCACCGGAAAC 407 Query 756 GCTCTCGGGAACCTAGGATTCGTTAACGTCACCGATCTCAAAGGAGGCAAAGTCGGCTTT 815 |||| ||| |||||||||||||| ||| |||||||||| ||||||||||||||||| ||| Sbjct 408 GCTCCCGGAAACCTAGGATTCGTCAACATCACCGATCTTAAAGGAGGCAAAGTCGGATTT 467 Query 816 GGCTCCGCCGCTCCTGGCTCCAAGCTCGATTCCTCTTACACCAAATCCGTTAAACAAATC 875 |||||||||||| | || ||||| |||||||| ||||||||||||||||||||||||||| Sbjct 468 GGCTCCGCCGCTTCAGGTTCCAAACTCGATTCATCTTACACCAAATCCGTTAAACAAATC 527 Query 876 CCTTACAACATCTCCGTTCTCGAAATCAACGCTCCGATCATCGCTCCCGGAATCTTAACC 935 |||||||||||||| | ||||| ||| | ||||||||||||||||| ||||| |||||| Sbjct 528 CCTTACAACATCTCAATCCTCGAGATCGATGCTCCGATCATCGCTCCGGGAATTTTAACC 587 Query 936 GCACCTGCTCCTTCTTCCGCCGGAGTTAGCAACATCACCGGACTT-CTCGAGAAAGCCGG 994 || ||||||||||| ||||| || | |||||||||||| || || ||||||||||| Sbjct 588 GCTCCTGCTCCTTCCGCCGCC-TTGTCA--AACATCACCGGA-TTACTAGAGAAAGCCGG 643 Query 995 TTGCAAAACCTTCGCGAATTTGCTCGTATCGAGCGGTGTTATTAAAACATT-CGAATCCA 1053 |||||||||||| ||||||||||| || || || || ||| | || || || ||||||| Sbjct 644 TTGCAAAACCTTTGCGAATTTGCTTGTCTCAAGTGGAGTTCTCAAGAC-TTACGAATCCG 702 Query 1054 CCGTTGAAAAAGGCTTGACGGTTTTTGCACCGTCCGATGAAGCTTTTAAAGCTAGA-GGT 1112 ||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||| Sbjct 703 CCGTTGAAAAAGGCTTGACGGTTTTTGCACCGTCCGATGAAGCTTTTAAAGCT-GAAGGT 761 Query 1113 GTACCAGATCTGACGAATCTCACACAAGCTGAGGTGGTCTCGCTCCTAGAGTATCACGCC 1172 ||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||| Sbjct 762 GTACCAGATCTGACGAAGCTCACACAAGCTGAGGTGGTCTCGCTCTTAGAGTATCACGCC 821 Query 1173 CTCGCTGAATACAAACCCAAAGGATCGTTAAAGACTAACAAAGA-CGCTATCTCCACTTT 1231 |||||||| || ||||| ||||| || || ||||||||||| || | ||||||||| || Sbjct 822 CTCGCTGAGTATAAACCTAAAGGCTCATTGAAGACTAACAA-GAACAATATCTCCACGTT 880 Query 1232 AGCCACTAACGGCGCCGGTAAATACGATTTAACGACGTCAACTTCCGGTGACGAGGTTAT 1291 |||||||| ||||||||| |||| |||| |||| || || || ||||| || || ||||| Sbjct 881 AGCCACTAGCGGCGCCGGGAAATTCGATCTAACTACCTCTACCTCCGGCGATGAAGTTAT 940 Query 1292 TCTCCATACCGGCGTTGGTCCGTCGAGACTCGCCGACACGGTGGTCGATGAGACACCTGT 1351 |||||| |||||||||| ||||||||||||||| ||||| || |||| | ||| || || Sbjct 941 TCTCCACACCGGCGTTGCTCCGTCGAGACTCGCGGACACTGTACTCGACGCGACTCCGGT 1000 Query 1352 TGTTATATTCACTGTGGATAATGTGCTCCTTCCC-GCTGAGCTTTTCGGAAAATCTTCAT 1410 ||| |||||||| ||||||||||| ||||| ||| |||||||| |||||||||||| || Sbjct 1001 TGTGATATTCACCGTGGATAATGTCCTCCT-CCCTGCTGAGCTATTCGGAAAATCTAAAT 1059 Query 1411 CGCCGGCGCCGGCACCGGAGCCAGTGAGTGCACCGACACCGACCCCGGCTAAGTCACCGT 1470 | || | |||||||||| ||| | ||| || | |||| | ||| | |||| | Sbjct 1060 CTCCTTCTCCGGCACCGGCGCC-G-GAGC-CA--GTTACCG-CACCG---A---CACCAT 1107 Query 1471 CTCCTGTGGAAGCACCTTCTCCAACCGCAGCTTCTCCGCCAGCACCACCGGTGGATGAAT 1530 |||| | ||| | |||||| || ||||| ||||| || || ||||| ||| |||||| | Sbjct 1108 CTCCGGCGGATGGACCTTCACCCACCGCGGCTTCACCACCGGCACCTCCGACGGATGA-T 1166 Query 1531 CTTCACCGGAAGGAGCTCCGTCAGACTCGCCGACAAGTTCAGAGAACAGTAA-TGCGAAA 1589 | |||| ||| | ||||| ||||||||||||||| |||||| ||||||||| | || Sbjct 1167 -T-CACCTGAAAGTGCTCCTTCAGACTCGCCGACAGGTTCAGCGAACAGTAAGT-CGGCT 1223 Query 1590 AACGCGGCGTTTCACGTTAACGCTCC-TGCGTTGTTCACCGCATTGGTCACTATTGCCGC 1648 ||||||||| || ||| | | || | ||||||||||||||||||||||||| ||||| Sbjct 1224 AACGCGGCGGTTGGCGTGAGTACACCGT-CGTTGTTCACCGCATTGGTCACTATCGCCGC 1282 Query 1649 C 1649 | Sbjct 1283 C 1283 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 70619314230 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5