BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G61113.1 Length=300 Score E Sequences producing significant alignments: (Bits) Value Ahg899070 jgi|Araly1|899070|Al_scaffold_0005_3036 449 4e-126 > Ahg899070 jgi|Araly1|899070|Al_scaffold_0005_3036 Length=285 Score = 449 bits (243), Expect = 4e-126 Identities = 265/276 (96%), Gaps = 0/276 (0%) Strand=Plus/Plus Query 25 GGAGGTTTAGAATTGCTCTGTGACTCCGTAAAGATTCATAAAGTTAACATCAACTTACTC 84 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||| | | Sbjct 10 GGAGGTTTAGAATTGCTCTGTGACTCCGTCAAGATTCATAAAGTTAACATCAACTTCCCC 69 Query 85 AATGATTCTGATATCTTGACAATGAAGGATTTGCTTTCATGGGTTCGTACCAATTTGATC 144 ||||| |||||| |||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 70 AATGAATCTGATGTCTTGACAATGAAGGATTTGCTATCATGGGTTCGTACCAATTTGATC 129 Query 145 AAGGAAAGGCCTGAAATGTTCATGAAAGGCGATACCGTGAGGCCTGGAGTTCTCGTGCTG 204 ||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||| Sbjct 130 AAGGAAAGGCCTGAAATGTTCATGAAAGGCGATACTGTGAGACCTGGAGTTCTCGTGCTG 189 Query 205 GTTAATGACTGCGATTGGGAACTTAGTGGTCAGCTCGATACAACATTAGAAGATAAAGAT 264 ||||| |||||||||||||||||||| || |||||||||||||||||||||||||||||| Sbjct 190 GTTAACGACTGCGATTGGGAACTTAGCGGCCAGCTCGATACAACATTAGAAGATAAAGAT 249 Query 265 GTTATAGTTTTCATTTCGACTCTGCACGGTGGATGA 300 |||||||||||||||||||||||||||||||||||| Sbjct 250 GTTATAGTTTTCATTTCGACTCTGCACGGTGGATGA 285 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 10530942564 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5