BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G61220.2 Length=1024 Score E Sequences producing significant alignments: (Bits) Value Ahg486598 jgi|Araly1|486598|fgenesh2_kg.5__2590__AT3G61220.1 1463 0.0 Ahg481274 jgi|Araly1|481274|fgenesh2_kg.4__334__AT2G24190.2 1092 0.0 > Ahg486598 jgi|Araly1|486598|fgenesh2_kg.5__2590__AT3G61220.1 Length=962 Score = 1463 bits (792), Expect = 0.0 Identities = 925/985 (94%), Gaps = 26/985 (3%) Strand=Plus/Plus Query 10 aaaaaaaGAAACGCCAATTATTGATATTCTTTGTCTAAAACCCAGAAA-TAAAA-AGGTT 67 |||||||||||||||||||||||||| |||||| || ||||||| ||| |||| ||||| Sbjct 1 AAAAAAAGAAACGCCAATTATTGATACTCTTTGCCTGAAACCCA-AAAGAAAAATAGGTT 59 Query 68 CGAAAATGGCAGAGGAAACTCCAAGATTGTTTAATGGTTTTTGTAGATATGCTGTAGTTA 127 |||||||||||||||||||||| | |||||||||||||||| Sbjct 60 CGAAAATGGCAGAGGAAACTCC-----------A----------AGATATGCTGTAGTTA 98 Query 128 CTGGAGCAAACAGAGGGATTGGATTTGAGATATGCAGACAATTAGCTAGTGAAGGGATTA 187 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 99 CTGGAGCAAACAGAGGGATTGGATTTGAGATATGCAGACAATTAGCTAGTCAAGGGATTA 158 Query 188 GAGTTGTTTTGACCTCTAGAGACGA-AAACAGAGGACTTGAAGCTGTTGAGACACTGAAG 246 ||||||||||||| |||||||| || ||| |||||||||||||||||||||||||||||| Sbjct 159 GAGTTGTTTTGACATCTAGAGATGAGAAA-AGAGGACTTGAAGCTGTTGAGACACTGAAG 217 Query 247 AAAGAGCTTGAGATTTCTGATCAAAGCCTTCTTTTTCATCAGCTTGATGTCGCTGATCCT 306 ||||||||| |||||||||||||||||||| |||||||||||||||||||| |||||||| Sbjct 218 AAAGAGCTTCAGATTTCTGATCAAAGCCTTGTTTTTCATCAGCTTGATGTCTCTGATCCT 277 Query 307 GCTAGTATCACATCTCTTGCTGAGTTTGTGAAAACCCAATTTGGGAAACTCGATATCTTG 366 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 278 GCTAGTATCACATCTCTTGCTGAGTTTGTGAAAACCCTATTTGGGAAACTCGATATCTTG 337 Query 367 GTCAATAATGCAGGGATTGGTGGTATAATCACTGATGCTGAAGCTTTAAGAGCTGGGGCA 426 ||||||||||||||| ||||||||||||||||||||||||| ||| |||||||||||||| Sbjct 338 GTCAATAATGCAGGGGTTGGTGGTATAATCACTGATGCTGATGCTCTAAGAGCTGGGGCA 397 Query 427 GGGAAAGAAGGTTTCAAGTGGGATGAAATCATCACGGAGACTTATGAGTTAACTGAAGAA 486 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 398 GGGAAAGAAGGTTTCAAGTGGGATGAAATCATCACGGAGACTTATGAGTTAGCTGAAGAA 457 Query 487 TGCATCAAGATAAACTACTATGGACCAAAGAGAATGTGTGAGGCGTTTATTCCTCTTTTG 546 ||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 458 TGCATCAAGATTAACTATTATGGACCAAAGAGAATGTGTGAGGCGTTTATTCCTCTTTTG 517 Query 547 AAGTTATCTGATTCACCAAGAATCGTCAATGTATCATCCTCCATGGGTCAACTAAAGAAT 606 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 518 AAGTTATCTGATTCACCAAGAATCGTCAATGTATCATCCTCCATGGGTCTACTAAAGAAT 577 Query 607 GTACTAAACGAATGGGCAAAAGGAATCCTGAGCGACGCAGAGAATCTCACTGAGGAAAGA 666 ||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||| Sbjct 578 GTACTAAACGAATGGGCAAAAGGAATCCTGAGCGATGCAGAGAATCTCACGGAGGAAAGA 637 Query 667 ATCGACCAAGTGATCAACCAACTTCTCAATGATTTCAAAGAAGGTACAGTTAAGGaaaaa 726 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 638 ATCGACCAAGTGATCAACCAACTTCTCAATGATTTCAAAGAAGGTACAGTTAAGGAAAAA 697 Query 727 aaCTGGGCTAAATTTATGTCGGCTTATGTGGTTTCAAAGGCAAGTTTGAATGGTTACACG 786 |||||||||||||||||||| ||||| |||||||| ||||| |||||||||||||||||| Sbjct 698 AACTGGGCTAAATTTATGTCAGCTTACGTGGTTTCGAAGGCCAGTTTGAATGGTTACACG 757 Query 787 AGGGTCCTGGCGAAGAAACATCCCGAGTTTCGCGTAAACGCTGTGTGTCCTGGATTTGTT 846 ||| || ||||||||| |||||||||||||||||||||||| |||||||||||||||||| Sbjct 758 AGGATCTTGGCGAAGATACATCCCGAGTTTCGCGTAAACGCGGTGTGTCCTGGATTTGTT 817 Query 847 AAGACAGATATGAACTTCAAGACTGGAGTCTTGTCTGTGGAAGAAGGAGCTTCAAGTCCT 906 ||||| ||||||||||||||||||||||| |||||||||||||||||||| ||||||||| Sbjct 818 AAGACGGATATGAACTTCAAGACTGGAGTTTTGTCTGTGGAAGAAGGAGCATCAAGTCCT 877 Query 907 GTGAGGTTGGCTTTACTTCCGCATCAAGAAACTCCTTCTGGTTGTTTCTTTAGTCGCAAG 966 |||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||| Sbjct 878 GTGAGGTTGGCTTTGCTTCCGCATCAAGAAACTCCTTCTGGTTGTTTCTTTAGCCGCAAG 937 Query 967 CAAGTTTCAGAATTCTGAATCTTCT 991 |||||||||||||||||||| |||| Sbjct 938 CAAGTTTCAGAATTCTGAATTTTCT 962 > Ahg481274 jgi|Araly1|481274|fgenesh2_kg.4__334__AT2G24190.2 Length=1010 Score = 1092 bits (591), Expect = 0.0 Identities = 818/927 (88%), Gaps = 18/927 (2%) Strand=Plus/Plus Query 102 TGGTTTTTGTAGATATGCTGTAGTTACTGGAGCAAACAGAGGGATTGGATTTGAGATATG 161 ||| ||||||||||||||| |||||||||||| || ||||| ||||||||||||||||| Sbjct 68 TGGGTTTTGTAGATATGCTATAGTTACTGGAGGGAATAGAGGAATTGGATTTGAGATATG 127 Query 162 CAGACAATTAGCTAGTGAAGGGATTAGAGTTGTTTTGACCTCTAGAGACGAAA-ACAGAG 220 |||||||||||| | |||||||||| |||||| |||| |||||||| |||| | |||| Sbjct 128 CAGACAATTAGCAAACCAAGGGATTAGGGTTGTTCTGACATCTAGAGATGAAAGA-AGAG 186 Query 221 GACTTGAAGCTGTTGAGACACTGAAGAAAGAGCTTGAGATTTCTGATCAAAGC-CTTCTT 279 |||||||||||||||||||| ||||||||||||||| |||||||||||||||| | | | Sbjct 187 GACTTGAAGCTGTTGAGACATTGAAGAAAGAGCTTGGGATTTCTGATCAAAGCAC-TGTC 245 Query 280 TTTCATCAGCTTGATGTCGCTGATCCTGCTAGTATCACATCTCTTGCTGAGTTTGTGAAA 339 |||||||||||||||||| ||||||| ||||||||| ||||||||||||||||||||||| Sbjct 246 TTTCATCAGCTTGATGTCTCTGATCCAGCTAGTATCTCATCTCTTGCTGAGTTTGTGAAA 305 Query 340 ACCCAATTTGGGAAACTCGATATCTTGGTCAATAATGCAGGGATTGGTGGTATAATCACT 399 |||||||| || ||||||||||||||| | |||||||||||| |||||||| |||||||| Sbjct 306 ACCCAATTCGGAAAACTCGATATCTTGATTAATAATGCAGGGGTTGGTGGTGTAATCACT 365 Query 400 GATGCTGAAGCTTTAAGAGCTGGGGCAGGGAAAGAAGGTTTCAAGTGGGATGAAA-TCAT 458 |||| ||| ||||||||||||||| | ||||||||||||||||| ||||| |||| | || Sbjct 366 GATGTTGATGCTTTAAGAGCTGGGACTGGGAAAGAAGGTTTCAAATGGGAGGAAACT-AT 424 Query 459 CACGGAGACTTATGAGTTAACTGAAGAATGCATCAAGATAAACTACTATGGACCAAAGAG 518 ||| ||||| |||||| || ||||||||||||||||||| |||| |||||||||||||| Sbjct 425 CACAGAGACGTATGAGCTAGCTGAAGAATGCATCAAGATTAACTGTTATGGACCAAAGAG 484 Query 519 AATGTGTGAGGCGTTTATTCCTCTTTTGAAGTTATCTGATTCACCAAGAATCGTCAATGT 578 |||||||||| ||||||||||||||||| ||||||||||||| ||||||||||| ||||| Sbjct 485 AATGTGTGAGTCGTTTATTCCTCTTTTGCAGTTATCTGATTCTCCAAGAATCGTTAATGT 544 Query 579 ATCATCCTCCATGGGTCAACTAAAGAATGTACTAAACGAATGGGCAAAAGGAATCCTGAG 638 |||||| | ||||||||||||||||||| |||||||||||||||||||||| |||||||| Sbjct 545 ATCATCATTCATGGGTCAACTAAAGAATTTACTAAACGAATGGGCAAAAGGGATCCTGAG 604 Query 639 CGACGCAGAGAATCTCACTGAGGAAAGAATCGACCAAGTGATCAACCAACTTCTCAATGA 698 |||||| ||||||||||| | |||||||||||| |||||||||||||||||||||||||| Sbjct 605 CGACGCTGAGAATCTCACGGTGGAAAGAATCGATCAAGTGATCAACCAACTTCTCAATGA 664 Query 699 TTTCAAAGAAGGTACAGTTAAGGaaaaaa-aCTGGGCTAAATTTATGTCGGCTTATGTGG 757 | | || |||| ||| |||||| | |||| | ||||||||| | ||||| || || || | Sbjct 665 TCTGAAGGAAGATACGGTTAAG-ACAAAAGATTGGGCTAAAGTCATGTCTGCCTACGTTG 723 Query 758 TTTC-AAAGGCAAGTTTGAATGGTTACACGAGGGTCCTGGCGAAGAAACATCCCGAGTTT 816 |||| |||| | |||||||||||||||||||| || |||| |||||||||||||||||| Sbjct 724 TTTCGAAAGCCG-GTTTGAATGGTTACACGAGGATCTTGGCAAAGAAACATCCCGAGTTT 782 Query 817 CGCGTAAACGCTGTGTGTCCTGGATTTGTTAAGACAGATATGAACTTCAAGACTGGAGTC 876 || |||||| | || |||||||||||||||||||| |||||||| ||||| |||||||| Sbjct 783 CGTGTAAACTCGGTTTGTCCTGGATTTGTTAAGACGGATATGAATTTCAAAACTGGAGTT 842 Query 877 TTGTCTGTGGAAGAAGGAGCTTCAAGTCCTGTGAGGTTGGCTTTACTTCCGCATCAAGAA 936 |||||||||||||||||||| ||||||||||| ||||| ||||| ||||| |||| |||| Sbjct 843 TTGTCTGTGGAAGAAGGAGCATCAAGTCCTGTAAGGTTAGCTTTGCTTCCACATCGAGAA 902 Query 937 ACTCCTTCTGGTTGTTTCTTT-AGTCGCAAGCAAGTTTCAGAATTCTGAA-TCTTCTTTT 994 |||||||||||||||||||| | ||| || ||||||||||| ||||||| |||| | | Sbjct 903 TCTCCTTCTGGTTGTTTCTTTGA-TCGTAAACAAGTTTCAGAGTTCTGAAATCTT-TGT- 959 Query 995 GTGTG-AGA--ATAATAAGCCAAAAAT 1018 ||| | | | |||||||||||||||| Sbjct 960 GTGGGGATAGTATAATAAGCCAAAAAT 986 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 38084794083 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5