BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G61320.1 Length=1606 Score E Sequences producing significant alignments: (Bits) Value Ahg939173 jgi|Araly1|939173|scaffold_503364.1 2054 0.0 > Ahg939173 jgi|Araly1|939173|scaffold_503364.1 Length=1277 Score = 2054 bits (1112), Expect = 0.0 Identities = 1224/1279 (96%), Gaps = 4/1279 (0%) Strand=Plus/Plus Query 71 TAAAACCCCTTATTTTCCCGCCAATGTATCAATCCATGAATCTATCAGTTTCTTCCAATT 130 |||||||||| |||||||||||||||||||| |||||||||||||| ||||||||||||| Sbjct 1 TAAAACCCCTAATTTTCCCGCCAATGTATCAGTCCATGAATCTATCCGTTTCTTCCAATT 60 Query 131 TCACTCACCGATCACTCCTCGAATCACGATTTCCTATATTCTCCACCGGATTCCGCAAAT 190 || |||||||||| |||||||| |||||||| ||||||||||||||||||||||| ||| Sbjct 61 TCGCTCACCGATCTCTCCTCGAGTCACGATTCCCTATATTCTCCACCGGATTCCGTAAAC 120 Query 191 CCGTCAATCTCAAACCTCCCCGTGTCTCATCTGGTCCTGAATCCAACGATTCAGGTCACG 250 |||||||||||||||||||||| || ||||| |||||||||||| |||||| ||||||| Sbjct 121 CCGTCAATCTCAAACCTCCCCGCGTGTCATCCGGTCCTGAATCCGGCGATTCCGGTCACG 180 Query 251 AAACCTTAACCGATAAGCTTATCCA-T-CTCCTCAGAGCTGTTCCAGATTGGGCAGACGA 308 ||||| ||||||| |||||||| | | |||||||||||||||||||||||||||||||| Sbjct 181 AAACCCTAACCGAGAAGCTTAT--ATTGCTCCTCAGAGCTGTTCCAGATTGGGCAGACGA 238 Query 309 GATTAAAGAGCGTGGGATGCAGCAGAAACGCTCTCTCTACACACACGAGAAATGGGTTGA 368 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 239 GATTAAAGAGCGTGGGATGCAGCAGAAACGCTCTCTCTACACACACGAGAAATGGGTCGA 298 Query 369 ACATAGAAGCTCTCTTCGCCATGTGCGTCATCTACTCTCGAGCTTTTCTTCACGAGTTAT 428 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 299 ACACAGAAGCTCTCTTCGCCATGTGCGTCATCTACTCTCGAGCTTTTCTTCACGAGTTAT 358 Query 429 ACTCTCCCTGATTCCACCTGTTTTCTTCTTCACAAGCGTCGCGGTTGTGATCGCTAGCTA 488 |||||| |||||||||||||||||||||||||||||||||||||||||||||| || || Sbjct 359 ACTCTCTTTGATTCCACCTGTTTTCTTCTTCACAAGCGTCGCGGTTGTGATCGCCAGTTA 418 Query 489 CAACTCCGCCGTGGCTTTGGATTGGCTTCCTGGTATTTTTCCAATTCTTCGATCCTCGTC 548 ||| |||||||||||||||||||||||||||||||| || |||||||||||||| ||||| Sbjct 419 CAATTCCGCCGTGGCTTTGGATTGGCTTCCTGGTATCTTCCCAATTCTTCGATCTTCGTC 478 Query 549 GTTGCCGTATCAGCTCACAGCTCCGGCTTTGGCTCTTCTTCTGGTCTTTCGTACGGAGGC 608 |||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||| Sbjct 479 GTTGCCGTATCAGCTCACGGCTCCGGCTTTGGCTCTTCTTCTGGTGTTTCGTACGGAGGC 538 Query 609 TTCGTATTCTAGGTATGAAGAAGGAAGGAAAGCTTGGGTTGGGATTATTGCTGGAACTAA 668 ||| |||||||||||||| |||||||||||||||||||||||||| |||||||||||||| Sbjct 539 TTCTTATTCTAGGTATGAGGAAGGAAGGAAAGCTTGGGTTGGGATAATTGCTGGAACTAA 598 Query 669 TGATTTAGCTAGGCAAGTTATTTGTTCCGTTGATAGCTCCGGTGATGAATTGATCATCAA 728 |||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| Sbjct 599 TGATTTAGCTAGGCAAGTGATTTGTTCCGTTGATAGCTCCGGTGATGAATTGATTATCAA 658 Query 729 AGATTTGCTTCTTCGTTACATTGCAGCTTTCCCTGTTGCTCTTAAGTGTCATGTGATTTA 788 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 659 AGATTTGCTTCTTCGTTACATTGCAGCTTTCCCTGTGGCTCTTAAGTGTCATGTGATTTA 718 Query 789 TGGTTCAGATATAGCAAGAGATCTCCGGAACTTGATAGAAGCAGATGACTTATCTCTGAT 848 |||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 719 TGGTTCAGATATCGCAAGAGATCTCCGGAATTTGATAGAAGCAGATGACTTATCTCTGAT 778 Query 849 TCTTCAAGCAAAGCATCGTCCGCGTTGTGTAATCGAGTTCATTTCTCAGAGCATTCAGTT 908 ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 779 TCTTCAAGCAAAGCATCGTCCCCGTTGTGTAATCGAGTTCATTTCTCAGAGCATTCAGTT 838 Query 909 GCTAAAACTAGACGATGCAAAGAGAGATTTGTTGGAATCAAAGATGCTGCATTTACATGA 968 |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 839 GCTAAAACTAGACGATGCAAAGAGAGATTTGTTGGAATCAAAGATGTTGCATTTACATGA 898 Query 969 AGGAATTGGAGTTTGTGAACAACTCATGGGCATTCCGATTCCTCTCTCTTACACACGCTT 1028 ||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 899 AGGCATTGGAGTTTGTGAACAACTAATGGGCATTCCGATTCCTCTCTCTTACACACGCTT 958 Query 1029 AACCTCGAGGTTTTTAGTCTTTTGGCATCTAACTCTCCCAATCATTCTCTGGGATGAATG 1088 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 959 AACCTCGAGGTTTTTAGTCTTTTGGCATTTAACTCTCCCAATCATTCTCTGGGATGAATG 1018 Query 1089 CCATTGGATTGTTGTTCCTGCTACTTTCATTAGTGCTGCCTCTCTGTTCTGCATAGAAGA 1148 ||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||| Sbjct 1019 CCATTGGATTGTTGTTCCTGCTACTTTCATTAGTGCTGCATCCCTGTTCTGCATAGAAGA 1078 Query 1149 AGTGGGTGTTCTTATAGAAGAACCATTTCCTATGTTGGCCTTAGATGAGCTTTGCGATCT 1208 ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 1079 AGTGGGTGTTCTTATAGAAGAGCCATTTCCTATGTTGGCCTTAGATGAGCTTTGCGATCT 1138 Query 1209 TGTGCATAGTAACATCCAAGAAGCTGTTAAATCTGAGAAAGTCATACGTAACCGCATCAT 1268 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 1139 TGTGCATAGTAACATCCAAGAAGCTGCTAAATCTGAGAAAGTCATACGTAACCGCATCAT 1198 Query 1269 TGCAAAGATAAAGCTCCATGAATTCAAGCACTCATCAAATGGTCGCCATAGATCTTGATT 1328 ||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||| Sbjct 1199 TGCAAAGATAAAGCTCCGCGAATTCAAGCACTCATCAAATGGTCGGCATAGATCTTGATT 1258 Query 1329 ACCGGTTGGTGTGAGTGAT 1347 || ||||||||||||||| Sbjct 1259 TCCCGTTGGTGTGAGTGAT 1277 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 60182587100 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5