BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G61430.1 Length=1266 Score E Sequences producing significant alignments: (Bits) Value Ahg486618 jgi|Araly1|486618|fgenesh2_kg.5__2610__AT3G61430.2 1500 0.0 Ahg483737 jgi|Araly1|483737|fgenesh2_kg.4__2797__AT2G45960.1 1018 0.0 > Ahg486618 jgi|Araly1|486618|fgenesh2_kg.5__2610__AT3G61430.2 Length=1227 Score = 1500 bits (812), Expect = 0.0 Identities = 1052/1157 (91%), Gaps = 59/1157 (5%) Strand=Plus/Plus Query 125 agaagaagaagaagaaaa-aaaa-CAGAGCTTTAC-AATTTCTCTCT--ACAGA--G-AT 176 |||||||||| || |||| |||| || |||||| | ||||||||| | | ||| | || Sbjct 108 AGAAGAAGAA-AA-AAAACAAAACCAAAGCTTT-CTAATTTCTCTATAGAGAGATCGAAT 164 Query 177 C--G---AAGAT-ATGGAAGGCAAGGAAGAAGACGTTAGAGTTGGAGCTAACAAGTTCCC 230 | | ||||| ||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 165 CGAGTCAAAGATAATGGAAGGCAAAGAAGAAGACGTTAGAGTTGGAGCTAACAAGTTCCC 224 Query 231 GGAGAGACAACCAATCGGAACATCAGCTCAGAGTGACAAGGACTACAAGGAACCACCACC 290 ||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||| Sbjct 225 GGAGAGACAACCAATCGGAACATCAGCTCAGAGCGACAAGGACTACAATGAACCACCACC 284 Query 291 AGCTCCGTTTTTCGAACCTGGTGAGCTTTCTTCATGGTCTTTTTGGAGAGCTGGGATCGC 350 |||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||| Sbjct 285 GGCTCCGTTTTTCGAGCCTGGTGAGCTTTCTTCATGGTCCTTTTGGAGAGCTGGGATCGC 344 Query 351 TGAGTTCATCGCTACTTTTCTCTTTCTCTACATCACTGTCTTGACTGTTATGGGAGTGAA 410 |||||||||||||||||| ||||| |||||||||||||| ||||||||||||||||| || Sbjct 345 TGAGTTCATCGCTACTTTCCTCTTCCTCTACATCACTGTTTTGACTGTTATGGGAGTTAA 404 Query 411 AAGGTCACCGAACATGTGTGCTTCCGTCGGAATCCAAGGAATCGCTTGGGCTTTCGGTGG 470 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 405 AAGGTCACCGAATATGTGTGCTTCCGTCGGAATCCAAGGAATCGCTTGGGCTTTCGGTGG 464 Query 471 TATGATATTTGCCTTAGTCTACTGTACCGCTGGTATCTCCGGTGGACACATCAACCCAGC 530 |||||| ||||||||||||||||| |||||||||||||||||||||||||||||||| || Sbjct 465 TATGATCTTTGCCTTAGTCTACTGCACCGCTGGTATCTCCGGTGGACACATCAACCCGGC 524 Query 531 GGTTACTTTTGGTCTGTTCTTAGCCCGGAAGCTGTCGCTTACTAGAGCTCTGTACTACAT 590 |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 525 GGTTACTTTTGGTCTGTTCTTAGCCCGGAAGCTGTCGCTTACCAGAGCTCTGTACTACAT 584 Query 591 AGTGATGCAGTGCTTGGGAGCTATCTGTGGTGCTGGAGTGGTTAAAGGGTTCCAGCCTAA 650 ||||||||||||||||||||| |||||||||||||| ||||| ||||| ||||||||||| Sbjct 585 AGTGATGCAGTGCTTGGGAGCCATCTGTGGTGCTGGCGTGGTCAAAGGATTCCAGCCTAA 644 Query 651 GCAATACCAGGCTCTAGGAGGAGGAGCTAACACTGTGGCTCATGGTTACACCAAGGGAAG 710 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 645 GCAATACCAGGCTCTAGGAGGAGGAGCTAACACTGTGGCTCATGGTTACACCAAAGGAAG 704 Query 711 TGGTCTTGGAGCTGAGATCATTGGCACATTCGTTCTTGTATACACAGTCTTCTCAGCAAC 770 |||||||||||||||||| |||||||| || || |||||||||||||||||||||||||| Sbjct 705 TGGTCTTGGAGCTGAGATTATTGGCACTTTTGTCCTTGTATACACAGTCTTCTCAGCAAC 764 Query 771 TGACGCCAAGAGAAATGCTCGTGACTCTCATGTCCCTATTCTTGCACCACTCCCAATCGG 830 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 765 TGACGCCAAGAGAAACGCTCGTGACTCTCATGTCCCTATTCTTGCACCACTCCCAATCGG 824 Query 831 GTTTGCGGTTTTCTTGGTTCACTTGGCAACCATCCCAATCACTGGCACAGGCATCAACCC 890 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 825 GTTTGCGGTTTTCTTGGTTCACTTGGCAACCATCCCAATCACTGGCACAGGCATCAACCC 884 Query 891 AGCTAGAAGCCTTGGAGCTGCAATCATCTACAACAAAGACCATTCCTGGGATGACCACTG 950 ||||||||| ||||||||||||||||||||||||||||||||||| ||||| |||||||| Sbjct 885 AGCTAGAAGTCTTGGAGCTGCAATCATCTACAACAAAGACCATTCATGGGACGACCACTG 944 Query 951 GGTGTTTTGGGTTGGCCCCTTCATTGGAGCTGCACTTGCTGCTCTTTACCATGTGGTTGT 1010 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 945 GGTGTTTTGGGTTGGACCCTTCATTGGAGCTGCACTTGCTGCTCTTTACCATGTGGTTGT 1004 Query 1011 CATCAGAGCCATCCCCTTCAAGTCCAGAAGCTAAGTAAAAACAAGACATCAAGTCCTCTG 1070 ||||||||||||||| ||||| |||||||||||||| ||||||||||| || | | || Sbjct 1005 CATCAGAGCCATCCCTTTCAAATCCAGAAGCTAAGTTAAAACAAGACAACA---C-T-TG 1059 Query 1071 GTTTCTGGCCTTGTCCTTAGTTGCTTCTATAGTTCTATTGTTGATCTACTACATGTATGT 1130 | | | || |||||||||||| | |||||||||| | ||||||| Sbjct 1060 -T--C---C-TT------AGTTGCTTCTAT--T------GTTGATCTAC-A--TGTATGT 1095 Query 1131 GTGCAATGTGTTTATCTATGTGCCCTCTTAATGCAATATTTGTAAACAAGGAA-GAAGTT 1189 ||| ||||||||||||||| ||||| ||||||||||| ||||||||||||||| ||| || Sbjct 1096 GTGAAATGTGTTTATCTATATGCCCACTTAATGCAATCTTTGTAAACAAGGAAAGAAATT 1155 Query 1190 CC-AAA-GGAGAATTATTTGCAAATTATGA-T--GTTTA--ACATGTTTATTACAGATCA 1242 || ||| || || ||||||||||||| | | | ||||| ||| |||||| |||| Sbjct 1156 CCCAAAAGG-GATTTATTTGCAAATTGTTAATCTGTTTATTACAAA---ATTACA-ATCA 1210 Query 1243 AAGATGTTTAACATGGA 1259 ||||||||||||||||| Sbjct 1211 AAGATGTTTAACATGGA 1227 > Ahg483737 jgi|Araly1|483737|fgenesh2_kg.4__2797__AT2G45960.1 Length=1270 Score = 1018 bits (551), Expect = 0.0 Identities = 764/869 (88%), Gaps = 6/869 (1%) Strand=Plus/Plus Query 180 AGATATGGAAGGCAAGGAAGAAGACGTTAGAGTTGGAGCTAACAAGTTCCCGGAGAGACA 239 ||| |||||||| || |||||||| |||||||| |||||||||||||| |||||||| || Sbjct 141 AGAGATGGAAGGTAAAGAAGAAGATGTTAGAGTCGGAGCTAACAAGTTTCCGGAGAGGCA 200 Query 240 ACCAATCGGAACATCAGCTCAGAGTGACAAGGACTACAAGGAACCACCACCAGCTCCGTT 299 ||| |||||||| || |||||||| ||||||||||||||||| |||||||| || ||||| Sbjct 201 ACCTATCGGAACTTCTGCTCAGAGCGACAAGGACTACAAGGAGCCACCACCTGCGCCGTT 260 Query 300 TTTCGAACCTGGTGAGCTTTCTTCATGGTCTTTTTGGAGAGCTGGGATCGCTGAGTTCAT 359 ||||| || || ||| || |||| ||||| || ||||||||||| |||||||||||||| Sbjct 261 GTTCGAGCCCGGCGAGATTGCTTCGTGGTCATTCTGGAGAGCTGGAATCGCTGAGTTCAT 320 Query 360 CGCTAC-TTTTCTCTTTCTCTACATCACTGTCTTGACTGTTATGGGAGTGAAAAGGTCAC 418 |||||| |||| | || || ||||||||||| |||||||||||||| ||||| ||||||| Sbjct 321 CGCTACGTTTT-TGTTCCTGTACATCACTGTTTTGACTGTTATGGGTGTGAAGAGGTCAC 379 Query 419 CGAACATGTGTGCTTCCGTCGGAATCCAAGGAATCGCTTGGGCTTTCGGTGGTATGATAT 478 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 380 CGAACATGTGTGCTTCCGTCGGAATCCAAGGAATCGCTTGGGCTTTCGGTGGTATGATCT 439 Query 479 TTGC-CTTAGTCTACTGTACCGCTGGTATCTCCGGTGGACACATCAACCCAGCGGTTACT 537 | || || |||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 440 TCGCTCTC-GTCTACTGCACCGCTGGTATCTCCGGTGGACACATCAACCCAGCGGTTACG 498 Query 538 TTTGGTCTGTTCTTAGCCCGGAAGCTGTCGCTTACTA-GAGCTCTGTACTACATAGTGAT 596 || ||| ||||||||||| ||||||| ||||| || | ||||| |||||||||||||||| Sbjct 499 TTCGGTTTGTTCTTAGCCAGGAAGCTTTCGCTCAC-ACGAGCTGTGTACTACATAGTGAT 557 Query 597 GCAGTGCTTGGGAGCTATCTGTGGTGCTGGAGTGGTTAAAGGGTTCCAGCCTAAGCAATA 656 ||||||||| |||||||||||||| ||||| ||||| || |||||||| || |||||||| Sbjct 558 GCAGTGCTTAGGAGCTATCTGTGGAGCTGGTGTGGTCAAGGGGTTCCAACCAAAGCAATA 617 Query 657 CCAGGCTCTAGGAGGAGGAGCTAACACTGTGGCTCATGGTTACACCAAGGGAAGTGGTCT 716 ||||||| | ||||| ||||| ||||| | |||||||||||||| || ||||||||||| Sbjct 618 CCAGGCTTTGGGAGGTGGAGCCAACACCATAGCTCATGGTTACACAAAAGGAAGTGGTCT 677 Query 717 TGGAGCTGAGATCATTGGCACATTCGTTCTTGTATACACAGTCTTCTCAGCAACTGACGC 776 |||||||||||| ||||| || || || ||||| ||||| ||||||||||| ||||| || Sbjct 678 TGGAGCTGAGATTATTGGAACCTTTGTCCTTGTTTACACCGTCTTCTCAGCCACTGATGC 737 Query 777 CAAGAGAAATGCTCGTGACTCTCATGTCCCTATTCTTGCACCACTCCCAATCGGGTTTGC 836 ||||||||| ||||||||||||||||| |||||||| ||||| ||||||||||| || || Sbjct 738 CAAGAGAAACGCTCGTGACTCTCATGTTCCTATTCTAGCACCGCTCCCAATCGGATTCGC 797 Query 837 GGTTTTCTTGGTTCACTTGGCAACCATCCCAATCACTGGCACAGGCATCAACCCAGCTAG 896 || |||||||||||||| ||||||||||| |||||||| || || ||||||||||| || Sbjct 798 TGTGTTCTTGGTTCACTTAGCAACCATCCCCATCACTGGAACCGGAATCAACCCAGCAAG 857 Query 897 AAGCCTTGGAGCTGCAATCATCTACAACAAAGACCATTCCTGGGATGACCACTGGGTGTT 956 ||| ||||||||||||||||| | |||||| ||| | ||||||| ||||| ||||| || Sbjct 858 AAGTCTTGGAGCTGCAATCATTTTCAACAAGGACAACGCCTGGGACGACCATTGGGTCTT 917 Query 957 TTGGGTTGGCCCCTTCATTGGAGCTGCACTTGCTGCTCTTTACCATGTGGTTGTCATCAG 1016 ||||||||| || |||||||| ||||||||||||||||| ||||| || | |||||||| Sbjct 918 TTGGGTTGGACCATTCATTGGTGCTGCACTTGCTGCTCTCTACCACGTTATAGTCATCAG 977 Query 1017 AGCCATCCCCTTCAAGTCCAGAAGCTAAG 1045 ||||||||| ||||||||||||||||||| Sbjct 978 AGCCATCCCATTCAAGTCCAGAAGCTAAG 1006 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 47310539997 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5