BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G61440.1 Length=1433 Score E Sequences producing significant alignments: (Bits) Value Ahg486620 jgi|Araly1|486620|fgenesh2_kg.5__2612__AT3G61440.1 2113 0.0 Ahg342794 jgi|Araly1|342794|fgenesh1_pg.C_scaffold_3002557 1188 0.0 > Ahg486620 jgi|Araly1|486620|fgenesh2_kg.5__2612__AT3G61440.1 Length=1349 Score = 2113 bits (1144), Expect = 0.0 Identities = 1281/1348 (95%), Gaps = 6/1348 (0%) Strand=Plus/Plus Query 1 GATGCAATGTATTTGTCTCGTTTTCTCATCCATTTATATGATTGCTTTCTTCTCCACCTC 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 GATGCAATGTATTTGTCTCGTTTTCTCATCCATTTATATGATTGCTTTCTTCTCCACCTC 60 Query 61 ACCAATCACTCCTCCTCTAAACTTTTCTTCACTCTCTTGTCTCTTCAAACTTCGGTTACT 120 ||| ||||||||||||||||||||| |||||||||||| |||||||||||||| ||||| Sbjct 61 ACCTATCACTCCTCCTCTAAACTTTGATTCACTCTCTTGACTCTTCAAACTTCGTTTACT 120 Query 121 CCGTTTTAGTCGA-CAACAATGGCCTCTGTTTCAAGGAGGTTACTGAGGAGAGAGACGAT 179 ||||||||||| | |||||||||||||||||||||||||||||||||| | ||||||| | Sbjct 121 CCGTTTTAGTC-ATCAACAATGGCCTCTGTTTCAAGGAGGTTACTGAGAAAAGAGACGTT 179 Query 180 CCCCTGTTTCAGCCACACCGTGAGGAAACTCTTCTCCACCGTTGGATCTCCTTCTTTTGC 239 |||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 180 CCCCTGCTTCAGCCACACCGTGAGGAAACTCTTCTCCACCGGCGGATCTCCTTCTTTTGC 239 Query 240 TCAGAGACTCAGAGATCTCCCCAAAGACTTCCCCTCTACCAACGCCAAACGTGACGCCTC 299 |||||||||||||||||||||||||||||||||||| || ||||||||||| || || || Sbjct 240 TCAGAGACTCAGAGATCTCCCCAAAGACTTCCCCTCCACTAACGCCAAACGCGATGCATC 299 Query 300 TCTGCTTATTGGGAAAACGCCTCTTGTGTTCCTCAACAAAGTCACTGAAGGTTGTGAAGC 359 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 300 TCTGCTTATTGGGAAAACGCCTCTTGTGTTTCTCAACAAAGTCACTGAAGGTTGTGAAGC 359 Query 360 GTATGTTGCAGCCAAACAAGAACATTTCCAGCCAACTTGTAGCATTAAAGACAGACCAGC 419 |||| |||||||||| ||||||||||||||||| || |||||||| |||||||||||||| Sbjct 360 GTATATTGCAGCCAAGCAAGAACATTTCCAGCCTACATGTAGCATCAAAGACAGACCAGC 419 Query 420 TATAGCCATGATTGCAGATGCAGAGAAGAAAAAACTAATCATCCCTGGAAAAACAACACT 479 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| | Sbjct 420 TATAGCCATGATTGCAGATGCAGAGAAGAAAAAACTAATCATCCCTGGAAAAACTACATT 479 Query 480 GATAGAGCCTACTTCAGGAAACATGGGAATCAGTTTGGCTTTCATGGCTGCTATGAAAGG 539 |||||| || |||||||||||||||||||| ||||||||||||||||| ||| ||||||| Sbjct 480 GATAGAACCCACTTCAGGAAACATGGGAATTAGTTTGGCTTTCATGGCGGCTCTGAAAGG 539 Query 540 GTACAGGATTATAATGACGATGCCTTCGTACACTAGCTTGGAGAGGAGAGTGACGATGAG 599 ||||| |||||| ||||| |||||||| |||||||||||||||||||||||||||||||| Sbjct 540 GTACAAGATTATTATGACAATGCCTTCATACACTAGCTTGGAGAGGAGAGTGACGATGAG 599 Query 600 ATCCTTTGGTGCTGAGCTTGTTCTCACTGATCCAGCCAAAGGAATGGGTGGAACTGTTAA 659 |||||||||||| |||||||||||||| |||||||||||||||||||||||||| ||||| Sbjct 600 ATCCTTTGGTGCAGAGCTTGTTCTCACCGATCCAGCCAAAGGAATGGGTGGAACCGTTAA 659 Query 660 GAAAGCTTATGACCTCCTTGATAGTACTCCTGATGCTTTCATGTGTCAACAGTTTGCTAA 719 ||||||||||||||||||||| | ||||||||||||||| |||||||||||||||||||| Sbjct 660 GAAAGCTTATGACCTCCTTGAAAATACTCCTGATGCTTTTATGTGTCAACAGTTTGCTAA 719 Query 720 TCCTGCAAACACTCAGATTCATTTTGATACAACTGGTCCTGAGATTTGGGAAGATACACT 779 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 720 TCCAGCAAACACTCAGATTCATTTTGATACAACTGGTCCTGAGATTTGGGAAGATACACT 779 Query 780 TGGAAATGTTGATATATTTGTGATGGGAATTGGCAGTGGAGGCACAGTCTCTGGTGTTGG 839 ||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 780 TGGGAATGTTGATATATTCGTGATGGGAATTGGCAGTGGAGGCACAGTCTCTGGTGTTGG 839 Query 840 CCGATACCTTAAATCTAAAAACCCCAATGTCAAGATATATGGAGTGGAGCCTGCTGAAAG 899 || ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 840 CCAATACCTTAAATCTAAAAACCCCAATGTTAAGATATATGGAGTGGAGCCTGCTGAAAG 899 Query 900 CAACATACTCAACGGTGGCAAACCAGGTCCACATGCTATCACAGGCAATGGTGTTGGATT 959 |||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||| Sbjct 900 CAACATACTCAACGGTGGCAAACCAGGTCCGCATGCTATCACAGGCAATGGGGTTGGATT 959 Query 960 CAAACCAGAAATCTTGGATATGGATGTTATGGAGAGTGTTCTTGAGGTTAGTAGTGAGGA 1019 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 960 CAAACCAGAAATCTTGGACATGGATGTTATGGAGAGTGTTCTTGAGGTTAGTAGTGAGGA 1019 Query 1020 TGCTATAAAGATGGCTAGAGAATTGGCATTGAAAGAAGGTCTCATGGTTGGGATATCGTC 1079 |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 1020 TGCTATAAAGATGGCTAGAGAATTGGCATTGAAAGAAGGTCTTATGGTTGGGATATCGTC 1079 Query 1080 GGGAGCTAACACCGTGGCAGCAATTAGACTGGCGAAAATGCCAGAGAATAAAGGCAAACT 1139 ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 1080 GGGAGCTAACACCGTGGCAGCCATTAGACTGGCGAAAATGCCAGAGAATAAAGGCAAACT 1139 Query 1140 CATTGTGACAATTCATGCGAGCTTCGGAGAAAGATATCTGTCGTCTGTTCTGTTTGATGA 1199 ||||||||| |||||||||||||||||||| |||||| |||||||||||||||||||||| Sbjct 1140 CATTGTGACGATTCATGCGAGCTTCGGAGAGAGATATTTGTCGTCTGTTCTGTTTGATGA 1199 Query 1200 GCTGAGGAAAGAAGCAGAGGAGATGAAGCCAGTTTCAGTGGATTGATGAAGGAAGACT-G 1258 |||||||||||||||||| ||||||||||| |||||||| ||||||||||| |||||| | Sbjct 1200 GCTGAGGAAAGAAGCAGAAGAGATGAAGCCGGTTTCAGTTGATTGATGAAGAAAGACTTG 1259 Query 1259 ACACTTTACCAAAAA--TCTCGGGAGCAAAAGATTATAAAAAGAAAGATGTAAGAGTAAT 1316 || |||||||||||| ||||||||||||||||||||||||| || |||||||||||||| Sbjct 1260 ACTCTTTACCAAAAAAATCTCGGGAGCAAAAGATTATAAAAACAA-GATGTAAGAGTAAT 1318 Query 1317 AAGTTTGTGTTTATATTGTTCTATTGTT 1344 | |||||| ||||||||||| ||||||| Sbjct 1319 ATGTTTGTATTTATATTGTTGTATTGTT 1346 > Ahg342794 jgi|Araly1|342794|fgenesh1_pg.C_scaffold_3002557 Length=1035 Score = 1188 bits (643), Expect = 0.0 Identities = 893/1011 (88%), Gaps = 28/1011 (3%) Strand=Plus/Plus Query 258 CCCCAAAGAC-TTCCCCTCTACCAACGCCAAACGTGACGCCTCTCTGCTTATTGGGAA-A 315 |||||||| | ||||| || || || |||||| | || ||||| |||| | | |||| | Sbjct 30 CCCCAAAG-CTTTCCCATCCACTAAAGCCAAAGGCGATGCCTCAATGCTCA-TCGGAAGA 87 Query 316 ACGCCTCTTGTGTTCCTCAACAAAGTCACTGAAGGTTGTGAAGCGTATGTTGCAGCCAAA 375 || || |||||||| ||||||||||| |||||||| ||||| || ||| |||||||||| Sbjct 88 ACTCCACTTGTGTTTCTCAACAAAGTGACTGAAGGATGTGAGGCTTATATTGCAGCCAAG 147 Query 376 CAAGAACATTTCCAGCCAACTTGTAGCATTAAAGACAGACCAGCTATAGCCATGATTGCA 435 ||||||||||||||||| ||||||||||| ||||||||||||||| |||||||||||| Sbjct 148 CAAGAACATTTCCAGCCTACTTGTAGCATCAAAGACAGACCAGCTTTAGCCATGATTGTG 207 Query 436 GATGCAGAGAAGAAAAAAC-TAATCATCCCTGGAAAAACAACACTGATAGAGCCTACTTC 494 |||||||||||| |||||| |||||| |||||||||||| ||| ||||||| || ||||| Sbjct 208 GATGCAGAGAAG-AAAAACTTAATCACCCCTGGAAAAACTACATTGATAGAACCCACTTC 266 Query 495 AGGAAACATGGGAATCAGTTTGGCTTTCATGGCTGCTATGAAAGGGTACAGGATTATAAT 554 ||||||||||||||| ||||||||||||||||| || |||||||| |||| |||||| || Sbjct 267 AGGAAACATGGGAATTAGTTTGGCTTTCATGGCGGCAATGAAAGGATACAAGATTATTAT 326 Query 555 GACGATGCCTTCGTACACTAGCTTGGAGAGGAGAGTGACGATGAGATCCTTTGGTGCTGA 614 || |||||||| ||||| |||||||||| ||||||||| ||||| ||||||||||| || Sbjct 327 AACAATGCCTTCTTACACAAGCTTGGAGAAGAGAGTGACAATGAGGTCCTTTGGTGCAGA 386 Query 615 GCTTGTTCTCACTGATCCAGCCAAAGGAATGGGTGGAACTGTTAAGAAAGCTTATGACCT 674 |||||| |||||||||||| ||||||||||||||||| ||||||||||||||||||| || Sbjct 387 GCTTGTCCTCACTGATCCAACCAAAGGAATGGGTGGAGCTGTTAAGAAAGCTTATGAACT 446 Query 675 CCTTGATAGTACTCCTGATGCTTTCATG-TGTCAACAGTTTGCTAATCCTGCAAACACTC 733 |||||| | ||||||||||||||| ||| || ||||||||| |||||| |||||||||| Sbjct 447 CCTTGAGACTACTCCTGATGCTTTTATGTTG-CAACAGTTTAATAATCCAGCAAACACTC 505 Query 734 AGATTCATTTTGATACAACTGGTCCTGAGATTTGGGAAGATACACTTGGAAATGTTGATA 793 || |||||| |||||| |||||||||||||||||||||||||||| ||| ||||| |||| Sbjct 506 AGGTTCATTATGATACGACTGGTCCTGAGATTTGGGAAGATACACATGGGAATGTCGATA 565 Query 794 TATTTGTGATGGGAATTGGCAGTGGAGGCACAGTCTCTGGTGTTGGCCGATACCTTAAAT 853 |||| |||||||||||||||| |||||| |||||| |||||||||| |||| ||||||| Sbjct 566 TATTCGTGATGGGAATTGGCACTGGAGGTACAGTCACTGGTGTTGGGAGATATCTTAAAT 625 Query 854 CTAAAAACCCCAATGTCAAGATATATGGAGTGGAGCCTGCTGAAAGCAACATACTCAACG 913 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 626 CTAAAAACCCCAATGTTAAGATATATGGAGTGGAGCCTGCTGAAAGCAACATACTCAACG 685 Query 914 GTGGCAAACCAG--GTCCACAT-GC-T-A--TC-ACA-G-G--CA----A--TGGTGTTG 955 |||||||||||| || || | | | | || ||| | | || | ||| |||| Sbjct 686 GTGGCAAACCAGTTGTGAACTTTGAGTTAGGTCCACATGAGATCACGGGAAATGGGGTTG 745 Query 956 GATTCAAACCAGAAATCTTGGATATGGATGTTATGGAGAGTGTTCTTGAGGTTAGTAGTG 1015 |||| ||||| || ||||||||||||||||||||||| | ||||||||||||||||||| Sbjct 746 GATTTAAACCGGATATCTTGGATATGGATGTTATGGACAAAGTTCTTGAGGTTAGTAGTG 805 Query 1016 AGGATGCTATAAAGATGGCTAGAGAATTGGCATTGAAAGAAGGTCTCATGGTTGGGATAT 1075 |||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 806 AGGATGCTGTAAAGATGGCTAGAGAATTGGCATTGAAAGAAGGACTCATGGTTGGGATAT 865 Query 1076 CGTCGGGAGCTAACACCGTGGCAGCAATTAGACTGGCGAAAATGCCAGAGAATAAAGGCA 1135 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 866 CGTCGGGAGCTAACACCGTGGCAGCCATTAGACTGGCGAAAATGCCAGAGAATAAAGGCA 925 Query 1136 AACTCATTGTGACAATTCATGCGAGCTTCGGAGAAAGATATCTGTCGTCTGTTCTGTTTG 1195 ||||||||||||| |||||| | ||||| ||||| |||||| |||||||||||||||||| Sbjct 926 AACTCATTGTGACGATTCATCCAAGCTTTGGAGAGAGATATTTGTCGTCTGTTCTGTTTG 985 Query 1196 ATGAGCTGAGGAAAGAAGCAG-AGGAGATGAAGCCAGTTTCAGTGGATTGA 1245 ||||||||||||||||||||| || | |||||||||||||||||||| ||| Sbjct 986 ATGAGCTGAGGAAAGAAGCAGCAGAA-ATGAAGCCAGTTTCAGTGGACTGA 1035 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 53592974715 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5