BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G61460.1 Length=774 Score E Sequences producing significant alignments: (Bits) Value Ahg486623 jgi|Araly1|486623|fgenesh2_kg.5__2615__AT3G61460.1 1057 0.0 > Ahg486623 jgi|Araly1|486623|fgenesh2_kg.5__2615__AT3G61460.1 Length=693 Score = 1057 bits (572), Expect = 0.0 Identities = 670/713 (94%), Gaps = 23/713 (3%) Strand=Plus/Plus Query 47 CTCTCTAAAAACCCTAGCTTTCTCCATGGGCTTTCCCGTAGGTTACACAGAGGTTTTCTT 106 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 CTCTCTAAAAACCCTAACTTTCTCCATGGGCTTTCCCGTAGGTTACACAGAGGTTTTCTT 60 Query 107 ACCGAAGCTTTTCGTACAAACGCTTTCGATTCTCGGATTCATCAGAACCATCGTCTTCTC 166 ||||||||||||||||||||| ||||||||||| || ||||||||||||||||||||||| Sbjct 61 ACCGAAGCTTTTCGTACAAACACTTTCGATTCTTGGTTTCATCAGAACCATCGTCTTCTC 120 Query 167 TATCTTCCGCTTCTTGGGTCTCTCAGATTTTCTCGAAATGGATCAAACCTGGCCCGATTA 226 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 121 TATCTTCCGCTTCTTGGGTCTCTCAGATTTTCTCGAAATGGATCAAACCTGGCCCGACTA 180 Query 227 CACATCGTACCCGACCCGAATACCCGAAACCCGCTCACCTTTCTCCGCACTCCTAATTAG 286 ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| || Sbjct 181 CACATCGTACCCGACCCGAATACCCGAAACCCGCTCACCCTTCTCCGCACTCCTAATCAG 240 Query 287 AGAGATCCTACCGGTTATCAAATTCGAAGAGTTAACGAATTCCGGCGAAGATCTACCGGA 346 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 241 AGAGATCTTACCGGTTATCAAATTCGAAGAGTTAACGAATTCCGGCGAAGATCTACCGGA 300 Query 347 AAACTGCGCCGTTTGTCTATACGAATTCGAAGGAGAACAAGAGATCCGGTGGCTGAGAAA 406 |||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||| Sbjct 301 AAACTGCGCCGTTTGTTTATACGAATTCGAAGGAGAGCAAGAGATCCGGTGGCTGAGAAA 360 Query 407 TTGCAGACATATATTTCACCGGAGCTGTCTTGACCGTTGGATGGATCATGATCAGAAGAC 466 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 361 TTGCAGACATATATTTCACCGGAGCTGTCTTGACCGTTGGATGGATCATGATCAGAAGAC 420 Query 467 GTGTCCACTTTGTAGAACACCGTTTGTTCCAGATGAGATGCAAGAAGAGTTTAATCAACG 526 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 421 GTGTCCACTTTGTAGAACACCGTTTGTTCCAGATGAGATGCAAGAAGAGTTTAATCAACG 480 Query 527 GCTATGGGCTGCTTCTGGTGTTCATGATTTTCACTGTCCCGTGACCGAATTATTATAGAA 586 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 481 GCTATGGGCTGCTTCTGGTGTTCATGATTTTCACTGTCCCGTGACCGAATTATTATAGAA 540 Query 587 GAAGCCACGcttttctatctttttctgtgtcccttatgttctttttt--gttttgacttt 644 ||| |||| | | ||||||||| ||||||||||| ||||||||||| Sbjct 541 GAA-------TTTT-T-T--------GTGTCCCTTGTGTTCTTTTTTTTGTTTTGACTTT 583 Query 645 -cacccctctacttttgatgttgcttttttCACCCCTCTTACTGACATTTAGACTTGCCA 703 ||||||| |||||||||| || |||||| |||||| |||||||||| ||||| |||||| Sbjct 584 TCACCCCTGTACTTTTGATTTTACTTTTTCCACCCC-CTTACTGACAATTAGATTTGCCA 642 Query 704 CGCTTTTATGTGTGTATATACTCCTTACATATGAATGAGAGATGAGCAATAAA 756 ||||||||||||||||||| | | ||||||||||||||||||||||||||| Sbjct 643 CGCTTTTATGTGTGTATATTTTG-T-ACATATGAATGAGAGATGAGCAATAAA 693 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 28554064833 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5