BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G61470.1 Length=1107 Score E Sequences producing significant alignments: (Bits) Value Ahg486624 jgi|Araly1|486624|fgenesh2_kg.5__2616__AT3G61470.1 1629 0.0 > Ahg486624 jgi|Araly1|486624|fgenesh2_kg.5__2616__AT3G61470.1 Length=1019 Score = 1629 bits (882), Expect = 0.0 Identities = 983/1029 (96%), Gaps = 18/1029 (2%) Strand=Plus/Plus Query 1 CTTTTATAGATTACACAACACACGTTCGTTTCTTTCTTCTTCTAACACACTCTGAGTCTT 60 |||||||||||||||| | || ||| ||| |||||||||||||||||| |||||||| Sbjct 1 CTTTTATAGATTACAC-A-TCA--TTC-CTTCGTTCTTCTTCTAACACACTTTGAGTCTT 55 Query 61 GAAGGTCAACAACGTCGAGAATAATGGCATCATCTCTTTGTGCTTCTTCTGCCATCGCTG 120 ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 56 GAAGGTCAACAACGTCGAGAAAAATGGCATCATCTCTTTGTGCTTCTTCTGCCATCGCTG 115 Query 121 CCATTTCTTCTCCAAGTTTCTTGGGTGGTAAGAAACTGAGGCTGAAGAAGAAGTTGACTG 180 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 116 CCATTTCTTCTCCAAGTTTCTTGGGTGGGAAGAAACTGAGGCTGAAGAAGAAGTTGACTG 175 Query 181 TTCCAGCTGTGTCCAGGCCAGATGCGTCGGTGCGCGCCGTCGCAGCTGATCCAGATAGAC 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 176 TTCCAGCTGTGTCCAGGCCAGATGCGTCGGTGCGCGCCGTCGCAGCTGATCCAGATAGAC 235 Query 241 CAATCTGGTTCCCGGGAAGCACTCCTCCAGAGTGGCTAGACGGTAGCCTCCCTGGTGACT 300 | ||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||| Sbjct 236 CGATCTGGTTCCCGGGAAGCACTCCTCCAGAGTGGCTCGACGGTAGCCTCCCCGGTGACT 295 Query 301 TCGGATTTGATCCTCTTGGTCTTTCATCGGACCCGGACAGTCTAAAATGGAACGTACAAG 360 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 296 TCGGATTTGATCCCCTTGGTCTTTCATCGGACCCGGACAGTCTAAAATGGAACGTACAAG 355 Query 361 CCGAGATAGTCCACTGCCGATGGGCTATGCTAGGAGCCGCCGGGATATTCATCCCAGAGT 420 | ||| ||||||||||||| ||||| ||||||||||||||||||||||||||||| |||| Sbjct 356 CAGAGCTAGTCCACTGCCGGTGGGCGATGCTAGGAGCCGCCGGGATATTCATCCCGGAGT 415 Query 421 TCCTAACGAAGATCGGAATCCTCAACACTCCGTCATGGTACACGGCGGGAGAGCAAGAGT 480 ||||||||||||| ||||||||||||||||| || ||||||||||||||||||||||||| Sbjct 416 TCCTAACGAAGATTGGAATCCTCAACACTCCATCGTGGTACACGGCGGGAGAGCAAGAGT 475 Query 481 ATTTCACGGACAAAACCACACTCTTTGTCGTTGAGCTCATTTTGATCGGATGGGCAGAAG 540 ||||||||||||||||||||||||| |||||||||||||| |||||||||||||| |||| Sbjct 476 ATTTCACGGACAAAACCACACTCTTCGTCGTTGAGCTCATCTTGATCGGATGGGCCGAAG 535 Query 541 GACGTAGATGGGCCGATATCATCAAGCCCGGTAGCGTCAACACTGACCCAGTCTTCCCAA 600 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 536 GACGTAGATGGGCCGATATCATCAAGCCCGGTAGCGTCAACACTGACCCAGTCTTCCCAA 595 Query 601 ACAACAAACTGACGGGCACAGACGTTGGTTACCCAGGTGGGTTATGGTTCGACCCGTTGG 660 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 596 ACAACAAACTGACGGGCACAGACGTTGGTTACCCGGGTGGGTTATGGTTCGACCCGTTGG 655 Query 661 GTTGGGGATCCGGTAGCCCGGCTAAGCTCAAGGAGTTGAGGACCAAGGAGATCAAGAACG 720 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 656 GTTGGGGATCCGGTAGCCCGGCTAAGCTCAAGGAGTTGAGGACCAAGGAGATCAAGAACG 715 Query 721 GAAGGTTGGCTATGTTGGCAGTGATGGGTGCTTGGTTCCAACACATCTACACTGGCACTG 780 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 716 GAAGGTTGGCTATGTTGGCAGTGATGGGTGCTTGGTTCCAACACATCTACACTGGCACTG 775 Query 781 GTCCTATTGATAACCTTTTTGCACATCTTGCTGATCCTGGTCACGCCACAATCTTCGCTG 840 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 776 GTCCTATTGATAACCTTTTTGCACATCTTGCTGATCCTGGTCACGCCACAATCTTCGCTG 835 Query 841 CTTTCACACCCAAGTGAGACAACGAAAAA-GGGTTATGGGGAGGTG-A-A-TGCGTTTGT 896 |||||||||||||||||||| | |||||| |||||||||||||| | | | ||||||||| Sbjct 836 CTTTCACACCCAAGTGAGACGA-GAAAAAAGGGTTATGGGGAGGAGGAGAATGCGTTTGT 894 Query 897 GTGTGATCATGTTTGTACAAATATCATTTTGAACTTAAAATTATT-ATGTACTTTATATA 955 ||| |||||||||||||||||||| |||||||||||||| |||| ||||| |||||||| Sbjct 895 GTG--ATCATGTTTGTACAAATATCGTTTTGAACTTAAAAATATTTATGTA-TTTATATA 951 Query 956 AATTGTGGTCGAATGCAAATTAAGG-TTCCCCGTAACACTCT-TTT-CCTAACTCAATGA 1012 |||||||||||||||||||||| || ||| || ||||||||| ||| ||||||||||||| Sbjct 952 AATTGTGGTCGAATGCAAATTA-GGATTCACCTTAACACTCTCTTTTCCTAACTCAATGA 1010 Query 1013 TCATAAGAT 1021 ||||||||| Sbjct 1011 TCATAAGAT 1019 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 41248996194 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5