BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G61580.1
Length=1926
Score E
Sequences producing significant alignments: (Bits) Value
Ahg939212 jgi|Araly1|939212|scaffold_503403.1 2318 0.0
Ahg483768 jgi|Araly1|483768|fgenesh2_kg.4__2828__AT2G46210.1 1042 0.0
> Ahg939212 jgi|Araly1|939212|scaffold_503403.1
Length=1390
Score = 2318 bits (1255), Expect = 0.0
Identities = 1351/1396 (97%), Gaps = 11/1396 (1%)
Strand=Plus/Plus
Query 187 GAGCTTTTGGTTCGTCGTCAATGGCGGAAGAGACGGAGAAAAAGTACATTACGAACGAAG 246
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 GAGCTTTTGGTTCGTTATCAATGGCGGAAGAGACGGAGAAAAAGTACATTACGAACGAAG 60
Query 247 ATCTTAAAAAACACAACAAATCTGGAGATCTATGGATCGCGATTCAAGGCAAGGTCTACA 306
| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 61 AACTTAAAAAACACAACAAATCTGGGGATCTATGGATCGCGATTCAAGGCAAGGTCTACA 120
Query 307 ACGTCTCCGATTGGATTAAAACTCATCCCGGAGGCGACACGGTGATTCTCAATCTCGTTG 366
||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||
Sbjct 121 ACGTCTCCGATTGGATTAAAACTCATCCCGGTGGCGACACCGTGATTCTCAATCTCGTTG 180
Query 367 GTCAAGACGTCACCGATGCTTTCATCGCATTTCATCCCGGAACCGCTTGGCACCATCTCG 426
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 181 GTCAAGACGTCACCGATGCTTTCATCGCATTTCATCCCGGAACCGCTTGGCATCATCTCG 240
Query 427 ACCATCTCTTCACCGGTTACCACATCAGAGATTTCCAAGTCTCCGAAGTCTCACGCGATT 486
|| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 241 ACAATCTCTTCACCGGTTACCACATCAGAGATTTCCAAGTCTCTGAAGTCTCACGCGATT 300
Query 487 ACCGTCGTATGGCTGCCGAGTTTCGTAAACTCGGTCTCTTCGAAAACAAAGGTCACGTTA 546
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 ACCGTCGCATGGCTGCCGAGTTTCGTAAACTCGGTCTCTTCGAAAACAAAGGTCACGTTA 360
Query 547 CTCTCTACACTCTAGCCTTCGTCGCCGCCATGTTCCTCGGAGTTCTCTACGGTGTTTTGG 606
||||||||||| ||||||||||||||||||||||| |||| |||||||||||||||||||
Sbjct 361 CTCTCTACACTTTAGCCTTCGTCGCCGCCATGTTCGTCGGCGTTCTCTACGGTGTTTTGG 420
Query 607 CTTGTACCTCCGTCTTCGCTCACCAAATCGCCGCCGCGCTTCTCGGTCTCCTCTGGATCC 666
||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 421 CTTGTACTTCCGTCTTCGCTCACCAAATCGCCGCCGCGCTTCTCGGACTCCTCTGGATCC 480
Query 667 AGAGCGCTTACATAGGTCACGATTCTGGTCATTACGTTA-TCATGTCGAACAAATCTTAT 725
||||||||||||||||||||||||| |||||||||| || ||||||||||||||||||||
Sbjct 481 AGAGCGCTTACATAGGTCACGATTCAGGTCATTACG-TAGTCATGTCGAACAAATCTTAT 539
Query 726 AACAGATTCGCTCAGCTTCTCTCCGGTAACTGTCTCACCGGAATCTCAATCGCGTGGTGG 785
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 540 AACAGATTCGCTCAGCTTCTCTCCGGTAACTGTCTCACCGGAATCTCAATCGCTTGGTGG 599
Query 786 AAATGGACTCACAATGCTCATCATC-TAGCTTGTAACAGCCTCGATTACGATCCAGATCT 844
||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||
Sbjct 600 AAATGGACTCACAATGCTCATCA-CTTAGCTTGTAACAGCCTCGATTACGATCCAGATCT 658
Query 845 ACAACACATCCCTGTCTTCGCCGTCTCCACCAAATTCTTCTCCTCATTGACCTCGA-GAT 903
|||||||||||||||||||||||||||||||||||||||| ||||||||| || | |||
Sbjct 659 ACAACACATCCCTGTCTTCGCCGTCTCCACCAAATTCTTCAACTCATTGACATC-ACGAT 717
Query 904 TCTACGATCGGAAACTCACGTTTGATCCAGTCGCGAGATTCTTAG-TCAGCTATCAACAC 962
||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||
Sbjct 718 TCTACGATCGGAAACTCACGTTTGATCCAGTCGCGAGATTCTT-GATCAGCTATCAACAC 776
Query 963 TTTACTTATTATCCAGTTATGTGCTTTGGAAGAATCAATCTCTTCATTCAAACGTTTCTC 1022
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||
Sbjct 777 TTTACTTATTATCCAGTTATGTGCTTCGGAAGAATCAATCTCTTCATTCAAACGTTTATC 836
Query 1023 TTGCTCTTCTCCAAACGTGAAGTACCAGATCGTGCTTTAAACTTCGCCGGAATCTTAGTC 1082
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 837 TTGCTCTTCTCCAAACGTGAAGTCCCAGATCGTGCTTTAAACTTCGCCGGAATCTTAGTC 896
Query 1083 TTCTGGACTTGGTTCCCACTCTTAGTCTCATGTCTACCAAACTGGCCTGAGAGATTCTTC 1142
||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct 897 TTCTGGACTTGGTTCCCTCTCTTAGTCTCATGTCTACCAAACTGGCCTGAAAGATTCTTC 956
Query 1143 TTCGTCTTCACAAGCTTCACCGTCACGGCGCTTCAACACATTCAATTCACGCTTAACCAT 1202
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 957 TTCGTCTTCACAAGCTTCACCGTCACGGCGCTTCAACACATTCAATTCACGCTTAACCAT 1016
Query 1203 TTCGCTGCTGATGTCTACGTTGGTCCACCCACCGGTAGCGACTGGTTCGAGAAGCAAGCG 1262
|||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1017 TTCGCTGCGGATGTCTACGTTGGTCCACCCACAGGTAGCGACTGGTTCGAGAAGCAAGCT 1076
Query 1263 GCGGGAACAATCGATATCTCTTGTAGATCATACATGGATTGGTTCTTTGGTGGATTACAG 1322
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1077 GCAGGAACAATCGATATCTCTTGTAGATCATACATGGATTGGTTCTTTGGTGGATTACAG 1136
Query 1323 TTTCAGCTTGAGCATCATTTGTTCCCTCG-CTTACCTCGTTGCCATCTCCGGAAAGTTTC 1381
||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||
Sbjct 1137 TTTCAGCTTGAGCATCATTTGTTCCCTCGGCT-ACCTCGTTGCCATCTCCGGAAAGTTTC 1195
Query 1382 TCCGGTGGTTCAAGAGCTTTGCAAGAAGCATAATCTTCCGTATAGGAGTATGTCGTGGTT 1441
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1196 TCCGGTGGTTCAAGAGCTTTGCAAGAAGCATAATCTTCCTTATAGGAGTATGTCGTGGTT 1255
Query 1442 TGAAGCAAATGTGTTGACCATTAACACTTTGAAGACAGCAGCTTATCAAGCTAGAGACGT 1501
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
Sbjct 1256 TGAAGCAAATGTGTTGACTATTAACACTTTGAAGACAGCAGCTTATCAAGCTAGAGATGC 1315
Query 1502 GGCTAATCCGGTGGTTAAGAACTTGGTTTGGGAAGCTTTGAATACTCATGGCTAAATGAT 1561
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1316 GGCTAATCCGGTGGTTAAGAACTTGGTTTGGGAAGCTTTGAATACTCATGGCTAG-TGAT 1374
Query 1562 TTTAATCAAAACAAAA 1577
||||||||||||||||
Sbjct 1375 TTTAATCAAAACAAAA 1390
> Ahg483768 jgi|Araly1|483768|fgenesh2_kg.4__2828__AT2G46210.1
Length=1595
Score = 1042 bits (564), Expect = 0.0
Identities = 1117/1380 (81%), Gaps = 54/1380 (4%)
Strand=Plus/Plus
Query 205 CAATGGCGGAAGAGACGGAGAAAAAG-TACATTACGAA-CGAAGATCTT-AAAAAACACA 261
|||||||||| | ||| || || || ||| |||| || ||| ||| || ||||||||||
Sbjct 152 CAATGGCGGATCAAACGAAG-AAGAGATACGTTAC-AAGCGAGGAT-TTGAAAAAACACA 208
Query 262 ACAAATCTGGAGATCTATGGATCGCGATTCAAGGCAAGGTCTACAACGTCTCCGATTGGA 321
||||| |||||||| ||||||| |||||||||| || || | | |||| |||||||||
Sbjct 209 ACAAACCTGGAGATTTATGGATATCGATTCAAGGTAAAGTTTGCGACGTTTCCGATTGGG 268
Query 322 TTAAAACTCATCCCGGAGGCGACA-CGGTGATTCTCAATCTCGTTGGTCAAGACGTCACC 380
||||| |||||||||||||||| | | | |||||||||||||| || ||||||||||||
Sbjct 269 TTAAATCTCATCCCGGAGGCGA-AGCAGCGATTCTCAATCTCGCCGGCCAAGACGTCACC 327
Query 381 GATGCTTTCATCGCATT-TCATCCCGGAACCGCTTGGCACCATCTCGACCATCTCTTCAC 439
|| || |||||||| || |||||||||||||| |||||||| ||||| | ||||||
Sbjct 328 GACGCGTTCATCGC-TTACCATCCCGGAACCGCATGGCACCACCTCGA--AAAGCTTCAC 384
Query 440 --CGGTTACCACATCAGAGATTTCCAAGTCTCCGAAGTCTCACGCGATTACCGTCGTA-T 496
|| || ||| | ||||| ||||| || || || || ||||| |||||||| || | |
Sbjct 385 AATGGCTATCACGTGAGAGACTTCCACGTGTCTGACGTGTCACGTGATTACCGCCG-ATT 443
Query 497 GGCTGCCGAGTT-TCGTAAACTCGGTCTCTTCGA-AAACAAAGGTCACGTTACTCTCTAC 554
|| |||||||| || |||| ||| |||||||| ||| ||||||||||| |||||||||
Sbjct 444 AGCCGCCGAGTTCTC-CAAACGCGGCCTCTTCGACAAA-AAAGGTCACGTGACTCTCTAC 501
Query 555 ACTCT-AGCCTTCGTCGCCGCCATGTTCCTCGG-AGTTCTCTACGGTGTTTTGGCTTGTA 612
|| || | | | ||||| | ||| | | ||| ||||||||||| |||||||| ||||
Sbjct 502 ACGCTCA-CGTGCGTCGGTGTAATGCT-CGCGGCGGTTCTCTACGGCGTTTTGGCGTGTA 559
Query 613 CCTCCGTCTTCGCTCACCAAATCGCCGCCGCGCTT-CTCGGTCTCCTCTGGATCCAGAGC 671
|| ||||| ||||||| ||| |||||| ||| ||||| ||||||||||||||||||
Sbjct 560 CCAGCGTCTGGGCTCACCTCATCTCCGCCG-TCTTACTCGGCCTCCTCTGGATCCAGAGC 618
Query 672 GCTTACATAGGTCACGATTCTGGTCATTACGTTATCATGTCGAACAAATCTTATAACAGA 731
|||||| | || |||||||| ||||| ||| | | ||||| |||| | | ||| | |
Sbjct 619 GCTTACGTCGGCCACGATTCCGGTCACTACACGGTGACGTCGACCAAACCGTGTAATAAA 678
Query 732 -TTCGCTCAGCTTCTCTCCGGTAACTGTCTCACCGGAATCTCAATCGCGTGGTGGAAATG 790
| | |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 679 CTAATC-CAGCTTCTCTCCGGTAACTGTCTCACCGGAATCTCAATCGCGTGGTGGAAATG 737
Query 791 GACTCACAATGCTCATCATC-TAGCTTGTAACAGCCTCGATTACGATCCAGATCTACAAC 849
||| ||||| ||||| || | | |||||||||||||| ||| ||||||||||||||||||
Sbjct 738 GACGCACAACGCTCACCA-CATCGCTTGTAACAGCCTTGATCACGATCCAGATCTACAAC 796
Query 850 ACATCCCTG-TCTTCGCCGTCTCCACCAAATTCTTCTCCTC-ATTGACCTCGA-GATTCT 906
||||||| | ||||||||||||| |||||||||||| || || ||| || | | ||||
Sbjct 797 ACATCCC-GATCTTCGCCGTCTCAACCAAATTCTTCAATTCGAT-GACGTC-ACGTTTCT 853
Query 907 ACGATC-GGAAACTCACGTTTGATCCAGTCGCGAGATTCTTAGTCAGCTATCAACACTTT 965
| | | ||||| | || || ||||| | || |||||||| ||||||| |||||||
Sbjct 854 ATGG-CAGGAAATTAACATTCGATCCTCTAGCTCGATTCTTAATCAGCTACCAACACTGG 912
Query 966 AC-TTATTATCCAGTTATGTGCTTTGGAAGAATCAATCTCTTCATTCAAACGTTTCTCTT 1024
|| || ||| ||||| |||||| | ||||||||||||||||| || ||||| || || ||
Sbjct 913 ACATT-TTACCCAGTAATGTGCGTCGGAAGAATCAATCTCTTTATCCAAACATTCCTATT 971
Query 1025 GCTCTTCTCCAAACGTGAAGTACCAGATCGTGCTTTAAACTTCGCCGGAATCTTAGTCTT 1084
||| ||||| ||||| | || |||||||| || |||||| |||||||||| ||||| ||
Sbjct 972 GCTATTCTCGAAACGCCACGTCCCAGATCGAGCCTTAAACATCGCCGGAATTTTAGTTTT 1031
Query 1085 CTGGACTTGGTTCCCACTCTTAGTCTCATGTCTACCAAACTGGCCTGAGAGATTCTTCTT 1144
|||||| |||||||| ||||||||||| | ||| |||| ||| | ||||||||| ||||
Sbjct 1032 CTGGACATGGTTCCCGCTCTTAGTCTCGTTTCTTCCAAGTTGGTCAGAGAGATTCATCTT 1091
Query 1145 CGTCTTCACAAGCTTCACCGTCACGGCGCTTCAACACATTCAATTCACGCTTAA-CCATT 1203
||||||| |||||| ||||||| ||| |||||||| |||| ||| | |||| |||||
Sbjct 1092 CGTCTTCGTTAGCTTCGCCGTCACTGCGATTCAACACGTTCAGTTCT-GTTTAAACCATT 1150
Query 1204 TCGCTGCTGATGTCTACGTTGGTCCACCCACCGGTAGCGACTGGTTCGAGAAGCAAGCGG 1263
|||| || ||||| || |||||||| | ||| | ||| ||||||||||| ||| | |
Sbjct 1151 TCGCAGCAGATGTTTATACCGGTCCACCTAACGGAAACGATTGGTTCGAGAAACAAACCG 1210
Query 1264 CGGGAACAATCGATATCTCTTGTAGATCATACATGGATTGGTTCTTTGGTGGATTACAGT 1323
| || || | ||||| || |||||||| || ||||||||||||||||||||||| ||||
Sbjct 1211 CCGGTACGCTTGATATATCGTGTAGATCGTATATGGATTGGTTCTTTGGTGGATTGCAGT 1270
Query 1324 TTCAGCTT-GAGCATCATTTGTTCCCTCG-CTTACCTCGTTGCCATCTCCGGAAAGTTTC 1381
||||| || ||||||||||| || ||||| ||| |||||||| |||||||||| ||| ||
Sbjct 1271 TTCAG-TTAGAGCATCATTTATTTCCTCGGCTT-CCTCGTTGTCATCTCCGGACAGTATC 1328
Query 1382 TCCGGTGGTTCAAG-AGCTTTGCAAGAAGCATAATCTTCCGTATAGGAGTATGTCGTGGT 1440
|||||||||| ||| ||||||| ||||||||||||||||| ||||||||| | |||||||
Sbjct 1329 TCCGGTGGTT-AAGGAGCTTTGTAAGAAGCATAATCTTCCTTATAGGAGTCTTTCGTGGT 1387
Query 1441 TTGAAGCAAATGTGTTGACCATTAACACTTTGAAGACA-GCAGCTTAT-CAAGCTAGAGA 1498
|| || ||||||| ||| |||| |||||||||| | || || || |||||||||||
Sbjct 1388 GGGAGGCTAATGTGTGGACGATTAGGACTTTGAAGA-ATGCGGCG-ATTCAAGCTAGAGA 1445
Query 1499 CGTGGCTAATCCGGTGGTT-AAGAACTTGGTTTGGGAAGCTTTGAATACTCATGGCTAAA 1557
| | ||||||| ||| || ||||||||| ||||||||||| ||||||||||||||||||
Sbjct 1446 TGCGACTAATCCTGTG-TTGAAGAACTTGCTTTGGGAAGCTGTGAATACTCATGGCTAAA 1504
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 72371465500
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5