BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G61590.1 Length=1836 Score E Sequences producing significant alignments: (Bits) Value Ahg486646 jgi|Araly1|486646|fgenesh2_kg.5__2638__AT3G61590.1 2423 0.0 > Ahg486646 jgi|Araly1|486646|fgenesh2_kg.5__2638__AT3G61590.1 Length=1762 Score = 2423 bits (1312), Expect = 0.0 Identities = 1613/1748 (92%), Gaps = 61/1748 (3%) Strand=Plus/Plus Query 54 gtctctctatctgtctGTATCATTCATTCGTGTTTATTTACAATCGAACCACGAAACGtc 113 |||||||| |||||||||||||||||||| | ||||||||||||| |||||||||||| Sbjct 1 GTCTCTCTGTCTGTCTGTATCATTCATTC--G--TATTTACAATCGAGCCACGAAACGTC 56 Query 114 tcttcttctctataaaaaccagatttttctcaatctcaatctctctcgctctcgctctcG 173 ||||| | |||||||| |||||||||||||||||||||| ||||| |||||||||||| Sbjct 57 TCTTC-T-TCTATAAAGACCAGATTTTTCTCAATCTCAA--TCTCT--CTCTCGCTCTCG 110 Query 174 TTTTCTTTGATGAACCCTTTTACTTCATTCTTACTCTTGATAAATCC-AAATTCCCGAGA 232 ||||||||||||||||||||||| ||||| |||||| | ||||||| ||| | |||||| Sbjct 111 TTTTCTTTGATGAACCCTTTTACCTCATTTTTACTC-T--TAAATCCAAAAAT-CCGAGA 166 Query 233 AACCCATTTCATTTCCTTCTTCTGTTTCTA-GAAAGA-C-C-TC--TTC--T-TT-TCGA 282 |||||||||||||||| |||||| |||||| |||| | | | || ||| | || || | Sbjct 167 AACCCATTTCATTTCCATCTTCTATTTCTAGGAAA-ATCTCATCTTTTCGGTCTTCTCAA 225 Query 283 TAAACCGAGATCCACGAAACCCGCATTTCCTCTCGCTAATCTATTCTAAATTTCGATACt 342 |||||||||||||||||||||||||||||||||||| |||| ||| |||||||||||| Sbjct 226 TAAACCGAGATCCACGAAACCCGCATTTCCTCTCGCAAATCGATTAAAAATTTCGATAC- 284 Query 343 ttttttttttttttATCGGTTTGAATCTCGAGAATTCCGAAGATT--------CA-GAGT 393 |||||||||||||||||||||||||||| ||||||| || |||| Sbjct 285 ---------TTTTTATCGGTTTGAATCTCGAGAATTCGGAAGATTCAGAGACCCACGAGT 335 Query 394 CTCCATAGTCGAAGAGGCTCTTGAGAATGGAAGCAGAAACGTCTTGGACCAATTATCCGT 453 ||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||| Sbjct 336 ATCCATAGTCGAAGTGGCTCTTGAGAATGGAAGCAGAAACGTCTTGGACTAATTATCCGT 395 Query 454 ACAGCTACATTACATATGTCCCTGAAGCTGAATCATACCGTGAGCAGAGCGACGATGAAG 513 ||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 396 ACAGCTACATTACTTATGTCCCTGAAGCTGAATCATACCGTGAGCAGAGCGATGATGAAG 455 Query 514 CCAAAGTCGAAACCTTTTCAATGGATTCTCTTCTCCCTGACGATTTATTAGAACGAATCC 573 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 456 CCAAAGTTGAAACCTTTTCAATGGATTCTCTTCTCCCTGACGATTTATTAGAACGAATCC 515 Query 574 TCTCGTTTCTACCCATTGCAAGCATCTTCAGAGCTGGTACTGTCTGCAAAAGATGGAACG 633 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 516 TCTCGTTTCTACCCATTGCAAGCATTTTCAGAGCTGGTACTGTCTGCAAAAGATGGAACG 575 Query 634 AGATTGTATCTTCTCGGAGGTTCTTATGTAATTTCTCCAACAATTCGGTTTCCCAAAGGC 693 |||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||| Sbjct 576 AGATTGTATCTTCTCGGAGGTTCTTATGTAATTTCTCCAACAATTCTGTTTCTCAAAGGC 635 Query 694 CTTGGTACTTCATGTTCACTACCACGGATGATCCATCTGGTTATGCTTATGACCCCATTA 753 ||||||||||||||||||||| ||||||||||||||| ||||||||||||||||| |||| Sbjct 636 CTTGGTACTTCATGTTCACTAGCACGGATGATCCATCGGGTTATGCTTATGACCCGATTA 695 Query 754 TCCGCAAATGGTACAGTTTCGATCTCCCTTGTATCGAAACATCCAATTGGTTTGTTGCTT 813 |||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 696 TCCGGAAATGGTACAGTTTCGATCTCCCTTGTATCGAAACATCGAATTGGTTTGTTGCTT 755 Query 814 CCTCTTGTGGATTGGTTTGCTTCATGGACAATGATTGCAGAAACAAGATTTATGTCTCAA 873 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 756 CCTCTTGTGGATTGGTTTGTTTCATGGACAATGATTGCAGAAACAAGATTTATGTCTCAA 815 Query 874 ATCCAATTACCAAACAATGGAGGACGCTTATTGAACCTCCTGGTCACAAATCGACAGATT 933 |||||||||||||||||||||||| ||||||||||||||| ||||||| ||||||||||| Sbjct 816 ATCCAATTACCAAACAATGGAGGAGGCTTATTGAACCTCCCGGTCACAGATCGACAGATT 875 Query 934 ACACGGCAATGTCTACCTCCGTAAACCGAG----CGAA-C---CA-AGCAGTAAAC-CGC 983 |||||||||||||||||||||| ||||||| | || | || |||||| ||| || Sbjct 876 ACACGGCAATGTCTACCTCCGTGAACCGAGCTAACCAATCAAACAGAGCAGT-AACACGT 934 Query 984 GCAAACCGGAGTTACTCAGTCTCGATAGTGAAATCGAAGCAAGTTCCAGGGAATTTCTTC 1043 | |||||||| |||||||||||| ||||||||||||||||||||| | |||||||||||| Sbjct 935 GGAAACCGGACTTACTCAGTCTCTATAGTGAAATCGAAGCAAGTTACTGGGAATTTCTTC 994 Query 1044 CAATGGGATCTCTCTATTCATCTCTACAGCTCTGAAACAATGACTTGGACAACATTAGTA 1103 ||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 995 CAATGGGATATCTCTATTCATCTCTACAGCTCTGAAACAATGACTTGGACAACATCAGTA 1054 Query 1104 AACGATGTCTTATCCGGATGGAGAGGAGGGAACGAGAGTGTGATCTGCAACAATGTTCTT 1163 | ||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||| Sbjct 1055 ACCGATGTCTTATCCGGATGGAGAGGAGGAAACGAGAGTGTGATCTGCAACGATGTTCTT 1114 Query 1164 TACTTCATGATATACTCAACGGGAGGCTCAGATCATCGCCACGGCTTGATCGCTTCGAAT 1223 ||||||||||| ||| | |||||||||||||||||||| ||||||||||| ||||| ||| Sbjct 1115 TACTTCATGATTTACCCCACGGGAGGCTCAGATCATCGACACGGCTTGATTGCTTCCAAT 1174 Query 1224 CTATCCTCGATAGGATCACCGTCAAGCGGAATCTTGATGAGGAGTTTCATTCCAATGCCG 1283 ||||||||||| |||||| |||||||||| |||||||||||||||||||||||||||||| Sbjct 1175 CTATCCTCGATTGGATCATCGTCAAGCGGCATCTTGATGAGGAGTTTCATTCCAATGCCG 1234 Query 1284 TGTTCTTTAACCTGCGGGAGATTGATGAATCTAAGAGAGAGGCTTGTGATTGTCGGAGGA 1343 ||||||||||||||||| |||||||||||||||||||||||||||||||| || |||||| Sbjct 1235 TGTTCTTTAACCTGCGGAAGATTGATGAATCTAAGAGAGAGGCTTGTGATCGTTGGAGGA 1294 Query 1344 ATCGGGAAACATGATCGACCAGAGGTTATAAAAGGGATAGGGATTTGGGTTTTGAAAGGG 1403 ||||||||||| ||||||||||||||||||||||| || |||||||||||| |||||||| Sbjct 1295 ATCGGGAAACACGATCGACCAGAGGTTATAAAAGGAATTGGGATTTGGGTTCTGAAAGGG 1354 Query 1404 AAGGAATGGGTAGAGATGGCGAAAATGCCTCAAAGATTCTTCCAAGGTTTTGGTGAATTC 1463 || ||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 1355 AAAGAATGGGTAGAAATGGCTAAAATGCCTCAAAGATTCTTCCAAGGTTTTGGTGAATTC 1414 Query 1464 GACGAGGTTTTCGCGAGTAGTGGCACGGATGATTTGGTTTACATTCAAAGCTATGGATCT 1523 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 1415 GACGAGGTTTTCGCGAGTAGTGGCACTGATGATTTGGTTTACATTCAAAGCTATGGATCT 1474 Query 1524 CCCGCGCTTCTCACGTTCGACATGAATCTCAAGTATTGGAGATGGTCTCAGAAATGTCCT 1583 |||||||||||||| |||||||||||||||||||| |||||||||||||| ||||||||| Sbjct 1475 CCCGCGCTTCTCACTTTCGACATGAATCTCAAGTACTGGAGATGGTCTCAAAAATGTCCT 1534 Query 1584 GTTACTAAAAAGTTCCCTCTTCAGCTCTTTACTGGGTTTTGCTTCGAACCAAGACTCGAG 1643 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1535 GTTACTAAGAAGTTCCCTCTTCAGCTCTTTACTGGGTTTTGCTTCGAACCAAGACTCGAG 1594 Query 1644 ATTGCTCCTTAGTTGCAATGAAGAAGCAAATGGGTCTGTGAAAGTCTTGGTCTTTTGGAT 1703 |||||||| ||||||||||||||||||||||||||||| |||||||| ||||||||||| Sbjct 1595 ATTGCTCCGTAGTTGCAATGAAGAAGCAAATGGGTCTGCAAAAGTCTTAGTCTTTTGGAT 1654 Query 1704 TGTTTTTGCACAGAGAAATCGCCGGCGGCTTT-ATGAAGATGATGATACGGTAATGTTTT 1762 |||||||||||||||||||||||||||| ||| ||||||||||| | |||||||||||| Sbjct 1655 TGTTTTTGCACAGAGAAATCGCCGGCGG-TTTGATGAAGATGAT-A--CGGTAATGTTTT 1710 Query 1763 TAAATTTT 1770 ||| |||| Sbjct 1711 TAATTTTT 1718 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 68943343450 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5