BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G61760.1 Length=1926 Score E Sequences producing significant alignments: (Bits) Value Ahg324615 jgi|Araly1|324615|fgenesh1_pm.C_scaffold_5002159 2669 0.0 Ahg931085 jgi|Araly1|931085|scaffold_303542.1 191 2e-47 Ahg950092 jgi|Araly1|950092|scaffold_801979.1 185 9e-46 Ahg945676 jgi|Araly1|945676|scaffold_701905.1 185 9e-46 Ahg939192 jgi|Araly1|939192|scaffold_503383.1 163 4e-39 > Ahg324615 jgi|Araly1|324615|fgenesh1_pm.C_scaffold_5002159 Length=1890 Score = 2669 bits (1445), Expect = 0.0 Identities = 1505/1535 (98%), Gaps = 0/1535 (0%) Strand=Plus/Plus Query 360 CTGCTGTGAGGCAGGAGATCTCGGATGAGACAGATCGTGAAACTGGTCGCAGCAGCAAAG 419 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 356 CTGCTGTGAGGCAGGAGATCTCGGATGAGACAGATCGTGAAACTGGTCGCAGCAGCAAAG 415 Query 420 TAATATCCACAGTCCCAATTCATCTCAGTATCTTCTCTCCTAATGTTGTGAATTTGACAC 479 |||| || |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 416 TAATTTCTACAGTCCCAATTCATCTCAGTATCTTCTCTCCTAATGTTGTGAATTTGACAC 475 Query 480 TTGTCGATCTTCCTGGGCTAACAAAGGTAGCTGTTGATGGCCAGCCTGAAAGCATTGTTC 539 ||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||| Sbjct 476 TTGTCGATCTTCCTGGGCTGACAAAGGTAGCTGTTGATGGCCAGCCTGAGAGCATTGTTC 535 Query 540 AAGACATCGAGAACATGGTCAGATCGTTTATTGAGAAGCCCAACTGCATCATACTTGCTA 599 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 536 AAGACATCGAGAACATGGTCAGATCGTTTATTGAGAAGCCCAACTGCATCATACTAGCTA 595 Query 600 TTTCCCCTGCAAATCAGGATCTTGCAACATCTGATGCCATTAAGATCTCTCGTGAAGTTG 659 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 596 TTTCCCCTGCAAATCAGGATCTTGCTACATCTGATGCCATTAAGATCTCTCGTGAAGTTG 655 Query 660 ATCCCAAAGGAGACAGGACTTTTGGAGTTTTAACAAAAATTGATCTCATGGACCAAGGCA 719 |||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 656 ATCCAAAAGGAGACAGGACTTTTGGAGTTTTAACTAAAATTGATCTCATGGACCAAGGCA 715 Query 720 CTAATGCTGTTGATATACTTGAAGGAAGGGGATACAAATTAAGGTATCCTTGGGTTGGTG 779 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 716 CTAATGCTGTTGATATACTTGAAGGAAGGGGATACAAATTAAGGTATCCTTGGGTTGGTG 775 Query 780 TTGTAAACCGGTCTCAAGCTGACATTAATAAAAGTGTTGATATGATTGCTGCTCGTCGGC 839 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 776 TTGTAAACCGGTCTCAAGCTGACATTAATAAAAGTGTTGATATGATTGCTGCTCGTCGGC 835 Query 840 GTGAACGTGATTACTTCCAGACTAGCCCAGAGTACAGACATTTAACTGAAAGAATGGGTT 899 ||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||| Sbjct 836 GTGAACGTGATTACTTCCAGACTAGCCCAGAATACAGACATTTAACTGACAGAATGGGTT 895 Query 900 CAGAGTATTTAGGAAAGATGCTCTCTAAGCATTTGGAAGTTGTTATCAAGTCTAGAATCC 959 |||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||| Sbjct 896 CAGAGTATTTAGGAAAGATGCTCTCTAAGCATTTAGAAGTTGTTATCAAGTCGAGAATCC 955 Query 960 CGGGACTTCAGTCTCTTATCACAAAGACAATTTCCGAGTTAGAGACAGAGCTAAGCCGTC 1019 |||||||||||||||||||||||||||| |||||||||||||||||||||||||||| || Sbjct 956 CGGGACTTCAGTCTCTTATCACAAAGACTATTTCCGAGTTAGAGACAGAGCTAAGCCATC 1015 Query 1020 TTGGGAAGCCTGTAGCAGCTGATGCTGGTGGAAAACTTTATATGATCATGGAAATTTGCC 1079 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1016 TTGGGAAGCCTGTAGCAGCTGATGCTGGTGGAAAACTTTATATGATCATGGAAATTTGCC 1075 Query 1080 GTGCCTTTGATCAAACTTTTAAAGAACACCTGGATGGCACGCGTTCAGGTGGTGAAAAGA 1139 ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 1076 GTGCCTTTGATCAAACTTTTAAAGAACACCTTGATGGCACGCGTTCAGGTGGTGAAAAGA 1135 Query 1140 TAAATTCTGTGTTCGACAATCAATTCCCAGCTGCCATTAAAAGACTGCAATTCGACAAAC 1199 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1136 TAAATTCTGTGTTCGACAATCAATTCCCAGCTGCCATTAAAAGACTGCAATTCGACAAAC 1195 Query 1200 ATCTCTCCATGGACAATGTACGGAAACTGATCACTGAAGCAGATGGATATCAACCTCATC 1259 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1196 ATCTCTCCATGGACAATGTACGGAAACTGATCACTGAAGCAGATGGATATCAACCTCATC 1255 Query 1260 TCATAGCTCCTGAACAAGGTTATCGCCGGCTCATAGAATCATGCTTAGTCTCCATTAGAG 1319 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 1256 TCATAGCTCCTGAACAAGGTTATCGCCGCCTCATAGAATCATGCTTAGTCTCCATTAGAG 1315 Query 1320 GCCCTGCTGAAGCAGCTGTTGATGCGGTTCATTCCATTCTCAAGGATCTTATCCACAAAT 1379 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1316 GCCCTGCTGAAGCAGCTGTTGATGCGGTTCATTCCATTCTCAAGGATCTTATCCACAAAT 1375 Query 1380 CCATGGGCGAAACATCTGAACTGAAGCAATATCCAACACTCAGAGTAGAAGTATCAGGTG 1439 |||| ||||||||||| ||||||||||||||||||||||| ||||||||||||||||||| Sbjct 1376 CCATCGGCGAAACATCAGAACTGAAGCAATATCCAACACTGAGAGTAGAAGTATCAGGTG 1435 Query 1440 CAGCCGTGGATTCATTGGATCGAATGAGAGACGAAAGCAGGAAAGCAACTCTGTTACTAG 1499 ||||||||||||||||||||||||||||||| || |||||||||||||||||||| |||| Sbjct 1436 CAGCCGTGGATTCATTGGATCGAATGAGAGAAGAGAGCAGGAAAGCAACTCTGTTGCTAG 1495 Query 1500 TGGACATGGAGTCTGGTTACTTAACGGTCGAGTTCTTCAGGAAACTCCCGCAAGATTCTG 1559 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 1496 TGGACATGGAGTCTGGTTACTTAACGGTTGAGTTCTTCAGGAAACTCCCGCAAGATTCTG 1555 Query 1560 AAAAAGGTGGGAATCCGACACATTCGATATTCGACAGATACAACGATGCTTATCTCCGAA 1619 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 1556 AAAAAGGTGGGAATCCGACACATTCGATATTCGACAGATACAACGATGCATATCTCCGAA 1615 Query 1620 GAATCGGCTCAAATGTGTTGTCATATGTGAACATGGTCTGCGCTGGCTTGAGAAACTCCA 1679 ||||||| || ||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 1616 GAATCGGTTCGAATGTGTTGTCTTATGTGAACATGGTCTGCGCTGGCTTGAGAAACTCCA 1675 Query 1680 TACCGAAATCCATTGTTTACTGTCAAGTCCGTGAAGCAAAACGAAGCCTTCTAGACATCT 1739 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 1676 TACCGAAATCCATTGTTTACTGTCAAGTCCGTGAAGCAAAACGAAGCCTTCTAGACTTCT 1735 Query 1740 TCTTCACCGAACTTGGCCAGAAAGAGATGAGCAAATTGTCGAAATTGTTGGATGAGGATC 1799 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1736 TCTTCACCGAGCTTGGCCAGAAAGAGATGAGCAAATTGTCGAAATTGTTGGATGAGGATC 1795 Query 1800 CTGCGGTTCAGCAGCGAAGGACTTCGATTGCGAAGAGGCTGGAATTGTATAGAAGTGCTC 1859 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1796 CTGCGGTTCAGCAGCGAAGGACTTCGATTGCGAAGAGGCTGGAATTGTATAGAAGTGCTC 1855 Query 1860 AAACGGATATTGAAGCAGTTGCTTGGTCCAAGTAG 1894 | ||||||||||||||||||||||||||||||||| Sbjct 1856 AGACGGATATTGAAGCAGTTGCTTGGTCCAAGTAG 1890 Score = 518 bits (280), Expect = 7e-146 Identities = 292/298 (98%), Gaps = 0/298 (0%) Strand=Plus/Plus Query 62 ATGGAGAGTTTGATTGCGCTTGTGAACAAGATTCAGAGAGCCTGTACGGCTCTGGGAGAT 121 ||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||| Sbjct 1 ATGGAGAGTTTGATTGCGCTTGTGAACAAGATTCAAAGAGCCTGTACTGCTCTGGGAGAT 60 Query 122 CACGGCGAGGGAAGCTCCCTCCCAACTCTCTGGGACTCATTGCCTGCAATTGCCGTCGTC 181 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 61 CACGGCGAGGGAAGCTCCCTCCCAACTCTCTGGGACTCATTGCCTGCAATTGCCGTCGTC 120 Query 182 GGTGGTCAGAGTTCTGGAAAGTCTTCAGTGCTAGAGAGTGTTGTTGGAAAAGATTTTCTA 241 |||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||| Sbjct 121 GGTGGTCAGAGTTCTGGAAAGTCTTCAGTGCTAGAGAGCGTTGTCGGAAAAGATTTTCTA 180 Query 242 CCTCGTGGAGCTGGGATTGTTACACGCAGACCTCTTGTCCTGCAGCTTCATAGAATTGAT 301 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 181 CCTCGTGGAGCTGGGATTGTTACACGTAGACCTCTTGTCCTGCAGCTTCATAGAATTGAT 240 Query 302 GAAGGGAAAGAGTATGCAGAGTTTATGCATCTTCCAAAGAAGAAGTTCACAGATTTTG 359 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 241 GAAGGGAAAGAGTATGCAGAGTTTATGCATCTTCCAAAGAAGAAGTTCACCGATTTTG 298 > Ahg931085 jgi|Araly1|931085|scaffold_303542.1 Length=723 Score = 191 bits (103), Expect = 2e-47 Identities = 115/121 (95%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 45 TTAGTTTTGATTCCGTTATGGAGAGTTTGATTGCGCTTGTGAACAAGATTCAGAGAGCCT 104 |||| ||||||| |||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 5 TTAGGTTTGATTTTGTTATGGAGATTTTGATTGCGCTTGTGAACAAGATTCAGAGAGCCT 64 Query 105 GTACGGCTCTGGGAGATCACGGCGAGGGAAGCTCCCTCCCAACTCTCTGGGACTCATTGC 164 ||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||| Sbjct 65 GTACGGCTCTGGGAGATTACGGCGAGGGAAGCTCCCTCCCAACTCTGTGGGACTCATTGC 124 Query 165 C 165 | Sbjct 125 C 125 > Ahg950092 jgi|Araly1|950092|scaffold_801979.1 Length=759 Score = 185 bits (100), Expect = 9e-46 Identities = 114/121 (94%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 45 TTAGTTTTGATTCCGTTATGGAGAGTTTGATTGCGCTTGTGAACAAGATTCAGAGAGCCT 104 |||| ||||||| |||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 5 TTAGGTTTGATTTTGTTATGGAGATTTTGATTGCGCTTGTGAACAAGATTCAGAGAGCCT 64 Query 105 GTACGGCTCTGGGAGATCACGGCGAGGGAAGCTCCCTCCCAACTCTCTGGGACTCATTGC 164 |||| |||||||||||| |||||||||||||||||||||||||||| ||||||||||||| Sbjct 65 GTACAGCTCTGGGAGATTACGGCGAGGGAAGCTCCCTCCCAACTCTGTGGGACTCATTGC 124 Query 165 C 165 | Sbjct 125 C 125 Score = 95.3 bits (51), Expect = 1e-18 Identities = 55/57 (96%), Gaps = 0/57 (0%) Strand=Plus/Plus Query 613 TCAGGATCTTGCAACATCTGATGCCATTAAGATCTCTCGTGAAGTTGATCCCAAAGG 669 |||||||||||| |||||||||||||||||||||||||||||||||||||| ||||| Sbjct 137 TCAGGATCTTGCTACATCTGATGCCATTAAGATCTCTCGTGAAGTTGATCCAAAAGG 193 > Ahg945676 jgi|Araly1|945676|scaffold_701905.1 Length=759 Score = 185 bits (100), Expect = 9e-46 Identities = 114/121 (94%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 45 TTAGTTTTGATTCCGTTATGGAGAGTTTGATTGCGCTTGTGAACAAGATTCAGAGAGCCT 104 |||| ||||||| |||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 5 TTAGGTTTGATTTTGTTATGGAGATTTTGATTGCGCTTGTGAACAAGATTCAGAGAGCCT 64 Query 105 GTACGGCTCTGGGAGATCACGGCGAGGGAAGCTCCCTCCCAACTCTCTGGGACTCATTGC 164 |||| |||||||||||| |||||||||||||||||||||||||||| ||||||||||||| Sbjct 65 GTACAGCTCTGGGAGATTACGGCGAGGGAAGCTCCCTCCCAACTCTGTGGGACTCATTGC 124 Query 165 C 165 | Sbjct 125 C 125 Score = 95.3 bits (51), Expect = 1e-18 Identities = 55/57 (96%), Gaps = 0/57 (0%) Strand=Plus/Plus Query 613 TCAGGATCTTGCAACATCTGATGCCATTAAGATCTCTCGTGAAGTTGATCCCAAAGG 669 |||||||||||| |||||||||||||||||||||||||||||||||||||| ||||| Sbjct 137 TCAGGATCTTGCTACATCTGATGCCATTAAGATCTCTCGTGAAGTTGATCCAAAAGG 193 > Ahg939192 jgi|Araly1|939192|scaffold_503383.1 Length=352 Score = 163 bits (88), Expect = 4e-39 Identities = 94/97 (97%), Gaps = 0/97 (0%) Strand=Plus/Plus Query 741 AAGGAAGGGGATACAAATTAAGGTATCCTTGGGTTGGTGTTGTAAACCGGTCTCAAGCTG 800 |||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||| Sbjct 145 AAGGAAGGGGATACAAATTAAGGTATCCTTGGGTTGATGTTGTAAACTGGTCTCAAGCTG 204 Query 801 ACATTAATAAAAGTGTTGATATGATTGCTGCTCGTCG 837 ||||||||| ||||||||||||||||||||||||||| Sbjct 205 ACATTAATATAAGTGTTGATATGATTGCTGCTCGTCG 241 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 72371465500 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5