BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G61770.1 Length=1106 Score E Sequences producing significant alignments: (Bits) Value Ahg939248 jgi|Araly1|939248|scaffold_503439.1 1502 0.0 > Ahg939248 jgi|Araly1|939248|scaffold_503439.1 Length=909 Score = 1502 bits (813), Expect = 0.0 Identities = 880/912 (96%), Gaps = 6/912 (1%) Strand=Plus/Plus Query 72 TAGCAGCAACTTAATTCTCTCATGGAGTCTCTTACATCAAATCCTTCCTTCGCTTGTTTC 131 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 TAGCAGCAACTTAATTCTCTCATGGAGTCTCTTACATCAAATCCTTCCTTCGCTTGTTTC 60 Query 132 TCTAAAACCATTTCTCATTACCCTTCTCGTTTCTCCTTCGTAAAGCTAACCTCTATCCAA 191 || ||||||||||||||||| ||||||||| ||||||||||||||||||| ||||||||| Sbjct 61 TCAAAAACCATTTCTCATTATCCTTCTCGTCTCTCCTTCGTAAAGCTAACTTCTATCCAA 120 Query 192 AAGTTGGAAGCTTCCAACAACACCTTATCGTTATTCTGCTGTAAATCA---TCTTCGAAT 248 ||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||| Sbjct 121 AAGTTGGAAGCTTCCAACAACACCTTATCGTTATTTTGCTGTAAATCATCCTCTTCGAAT 180 Query 249 CCTAAACCAGATTGCAATCGTCGTATCAAGTTAAACCCTTTATGTGTATTGCGTCCAATC 308 |||||||||||||||||||||||||| |||||||||||||| ||||||||||| |||||| Sbjct 181 CCTAAACCAGATTGCAATCGTCGTATAAAGTTAAACCCTTTTTGTGTATTGCGCCCAATC 240 Query 309 ATTCGAACAATAAAGGGTTTGGTTTCTTCTCAATCCAGGCAATGGATGTCTCGTTTTCGA 368 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 241 ATTCGAACAATAAAGGGTTTGGTTTCTTCTCAATCCAGGCTATGGATGTCTCGTTTTCGA 300 Query 369 GCTTACAGAGACGACACGGCGGCGTTTTCTGAGGATTTCGCTGGAGATTTGAAGCATAAC 428 ||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||| Sbjct 301 GCTTACAGAGACGACACGGCGGCGTTTTCGGAGGATTTCGCCGGAGATTTGAAGCATAAC 360 Query 429 GGTGGATTAGGGATTGCCCTTTTGAGCGTTACTGCTTCTGCTAAGATAAAGATTAGCCCT 488 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 361 GGTGGATTAGGGATTGCCCTTTTGAGCGTTACTGCTTCCGCTAAGATAAAGATTAGCCCT 420 Query 489 TTCGTTGCGACGCTCTCTGCGAATCCAACTTTCGTTTCAGCTGTAGTCGCGTGGTTCTTT 548 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 421 TTCGTTGCGACGCTCTCTGCGAATCCAACTTTCGTTTCAGCTGTAGTCGCGTGGTTCTTT 480 Query 549 GCGCAATCGAGTAAAATGGTTATCAATTTCTTCATTGAGAGGAAATGGGATTTTCGTCTT 608 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 481 GCGCAATCGAGTAAAATGGTTATCAATTTCTTCATTGAGAGGAAATGGGATTTTCGTCTT 540 Query 609 CTCTATGCTTCTGGTGGGATGCCTTCGTCTCACTCAGCTTTATGTATGGCTTTGACGACC 668 ||||||||||||||||| ||||||||||||||||| ||| |||||||||||||||||||| Sbjct 541 CTCTATGCTTCTGGTGGAATGCCTTCGTCTCACTCGGCTCTATGTATGGCTTTGACGACC 600 Query 669 TCTGTGGCGCTTTGTCATGGAGTTGCAGATTCCTTGTTTCCTGTTTGTTTAGGGTTTAGC 728 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 601 TCTGTGGCGCTTTGTCATGGAGTTGCAGATTCTTTGTTTCCTGTTTGTTTAGGGTTTAGC 660 Query 729 TTGATTGTCATGTATGATGCAATTGGTGTTAGACGCCATGCCGGTATGCAAGCTGAGGTT 788 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 661 TTGATTGTGATGTATGATGCAATTGGTGTTAGACGCCATGCCGGTATGCAAGCTGAGGTT 720 Query 789 CTGAACTTGATCATTAGGGACTTGTTCGAAGGACATCCCATCAGTCAAAGAAAGCTTAAG 848 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 721 CTGAACTTGATCATAAGGGACTTGTTCGAAGGACATCCCATCAGTCAAAGAAAGCTAAAG 780 Query 849 GAACTGCTTGGTCACACTCCTTCGCAGGTTCTTGCTGGAGCATTGGTTGGTATTGTGATT 908 ||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 781 GAATTGCTCGGTCACACTCCTTCGCAGGTTCTTGCTGGAGCATTGGTTGGTATTGTGATT 840 Query 909 GCTTGCTTTTGTTGCCAAGGCTATCTCGTCTCAGTCTAAGAAGATGTCTTTTATTCCAAG 968 |||||||||||||||||||||||| ||||||||| ||||||| | ||||||||| ||| Sbjct 841 GCTTGCTTTTGTTGCCAAGGCTATATCGTCTCAGCCTAAGAAC-T--CTTTTATTCAAAG 897 Query 969 TGATCTGGTTGG 980 || ||||||||| Sbjct 898 TGTTCTGGTTGG 909 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 41210873277 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5