BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G61820.1
Length=1827
Score E
Sequences producing significant alignments: (Bits) Value
Ahg486683 jgi|Araly1|486683|fgenesh2_kg.5__2675__AT3G61820.1 2435 0.0
> Ahg486683 jgi|Araly1|486683|fgenesh2_kg.5__2675__AT3G61820.1
Length=1666
Score = 2435 bits (1318), Expect = 0.0
Identities = 1516/1609 (94%), Gaps = 23/1609 (1%)
Strand=Plus/Plus
Query 1 GAGCTTCATTTTGCCTTTGTATACTTTTGAGTAGATAGATAGACAGACTATAGTCTATAT 60
|||||||||||||||||| |||||||||| ||||||| | | | |||||||||||| |||
Sbjct 1 GAGCTTCATTTTGCCTTTATATACTTTTGGGTAGATACA-A-ATAGACTATAGTCTCTAT 58
Query 61 AAGATCCATGTGACAATAGTTAAAAT-C-CTCATATTTTCATTTCCAATGGAGCGCAAA- 117
|||||||||||||||||||||||||| | |||||||||||||||||||||||||| |||
Sbjct 59 AAGATCCATGTGACAATAGTTAAAATCCTCTCATATTTTCATTTCCAATGGAGCG-AAAT 117
Query 118 GTCTTGAATACCCTCGCCTTCTCCGTCTTTGCCGTTCTCTTC-T----T-CA---CCTCC 168
||| | |||||||||| |||||||||||||| |||||||||| | | || |||||
Sbjct 118 GTCCTAAATACCCTCGTCTTCTCCGTCTTTGTCGTTCTCTTCTTCACCTCCATTTCCTCC 177
Query 169 TCTGCTTCTTCCCAATACCAAACTCTTGTCGTCAACACTCTTCCTTCTTCCGCAACACTC 228
|||||||| ||||||||||||||||| |||||||||||||||||||| |||||||| |||
Sbjct 178 TCTGCTTCCTCCCAATACCAAACTCTCGTCGTCAACACTCTTCCTTCCTCCGCAACCCTC 237
Query 229 TCATGGCCCGAGTCCGAATCTTTAACTGATGAATCTTTATCCGAGTCCACAACTTCACTC 288
|| |||||||| ||||||||||| |||||||||| ||||||| |||||||||||||||
Sbjct 238 TCGTGGCCCGAATCCGAATCTTTCTCTGATGAATCCGTATCCGAATCCACAACTTCACTC 297
Query 289 TCTGTCCATTTATCACACGTGGATGCTCTGTCTTCCTTCTCCGACGCATCTCCGGCGGAC 348
||||| ||||||||||||||||||||||||||||||||||||||||| ||||||| ||||
Sbjct 298 TCTGTTCATTTATCACACGTGGATGCTCTGTCTTCCTTCTCCGACGCCTCTCCGGTGGAC 357
Query 349 CTCTTCAACCTCCGTCTCCAACGAGACTCTCTCCGCGTCAAATCTATTACCAGCCTCGCC 408
|| ||||||||||||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct 358 CTTTTCAACCTCCGTCTCCAACGAGACTCTCTCCGCGTCAAATCCATAACCAGCCTCGCC 417
Query 409 GCCGTATCAACCGGACGAAATG-CTACGAAAAGAACTCCACG-TACCGCCGGTGGATTTA 466
||||| ||||||||||| |||| || | |||||||||||||| | | || ||||||||||
Sbjct 418 GCCGTGTCAACCGGACGGAATGCCT-CCAAAAGAACTCCACGCT-CAGCAGGTGGATTTA 475
Query 467 GCGGCGCAGTTATCTCTGGCCTCTCACAAGGAAGCGGAGAGTATTTTATGAGGTTAGGTG 526
||||||| |||||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct 476 GCGGCGCCGTTATCTCCGGTCTCTCACAAGGAAGCGGAGAGTATTTTATGAGGTTAGGTG 535
Query 527 TTGGAACTCCGGCGACTAACGTTTACATGGTGCTCGACACAGGAAGCGACGTCGTTTGGC 586
||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||
Sbjct 536 TTGGAACTCCGGCGACTAACGTTTACATGGTCCTCGACACAGGTAGCGACGTCGTTTGGC 595
Query 587 TCCAATGCTCTCCTTGCAAAGCCTGTTACAACCAGA-CCGACGCCATTTTTGACCCGAAG 645
|||||||||||||||||||||||||||||||||| | |||||| |||||||||||| |||
Sbjct 596 TCCAATGCTCTCCTTGCAAAGCCTGTTACAACCA-ATCCGACGTCATTTTTGACCCCAAG 654
Query 646 AAATCCAAAACTTTCGCCACCGTACCATGTGGATCTCGCCTTTGCCGGAGACTAGACGAC 705
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 655 AAATCCAAAACTTTCGCCACCGTACCATGTGGATCTCGCCTTTGCCGGAGACTAGACGAC 714
Query 706 TCGTCGGAATGTGTCACTCGTCGAAGCAAGACTTGTCTCTACCAAGTATCGTACGGTGAC 765
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 715 TCGTCGGAATGTGTCACTCGTCGAAGCAAGACTTGTCTCTACCAAGTATCGTACGGTGAT 774
Query 766 GGATCATTCACCGAAGGAGATTTCTCAACTGAAACGCTGACGTTTCATGGAGCGCGTGTT 825
||||||||||| ||||||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 775 GGATCATTCACGGAAGGAGATTTCTCAACCGAAACGCTGACGTTTCACGGAGCGCGTGTT 834
Query 826 GATCACGTGCCGTTAGGATGCGGTCACGATAACGAAGGCTTGTTCGTTGGTGCGGCTGGG 885
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 835 GATCACGTGCCGTTAGGATGTGGTCACGATAACGAAGGCTTGTTCGTTGGTGCGGCTGGG 894
Query 886 CTTTTGGGCTTGGGCCGTGGTGGGTTATCTTTCCCGTCGCAGACGAAAAACCGTTATAAC 945
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 895 CTTTTGGGCTTGGGCCGTGGTGGGTTATCTTTTCCGTCGCAGACGAAAAACCGTTATAAC 954
Query 946 GGAAAATTCTCTTACTGTTTGGTTGACCGGACGAGTTCCGGTTCTTCTTCTAAACCACCG 1005
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 955 GGAAAATTCTCTTACTGTTTGGTTGACCGGACGAGTTCCGGTTCTTCTTCTAAACCGCCG 1014
Query 1006 TCAACAATCGTGTTTGGAAACGCCGCCGTTCCGAAAACCTCTGTTTTCACGCCGTTACTA 1065
||||| ||||| || ||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1015 TCAACTATCGTCTTCGGAAACGACGCCGTTCCGAAAACCTCTGTTTTCACGCCGTTACTA 1074
Query 1066 ACGAACCCGAAACTCGACACGTTTTATTACTTGCAGCTTCTTGGAATCAGCGTTGGTGGT 1125
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1075 ACGAATCCGAAACTCGACACGTTTTATTACTTGCAGCTTCTTGGAATCAGCGTTGGTGGT 1134
Query 1126 TCGCGCGTTCCCGGCGTTTCGGAGTCGCAGTTCAAGCTTGACGCCACCGGAAACGGCGGT 1185
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1135 TCGCGCGTTCCCGGCGTTTCGGAGTCGCAGTTCAAGCTTGACGCCACCGGAAACGGCGGT 1194
Query 1186 GTCATTATAGATTCCGGTACTTCGGTTACTCGGCTGACGCAACCTGCTTACGTAGCGCTT 1245
|| ||||| ||||||||||||||||||||||||||||||||| |||| ||||| ||||||
Sbjct 1195 GTTATTATCGATTCCGGTACTTCGGTTACTCGGCTGACGCAATCTGCATACGTGGCGCTT 1254
Query 1246 AGAGACGCTTTTAGACTTGGTGCTACGAAGCTGAAACGTGCTCCATCGTATTCTTTGTTC 1305
|||||||| ||| |||||||||| |||||||||||||||||||| |||||||||||||||
Sbjct 1255 AGAGACGCGTTTCGACTTGGTGCGACGAAGCTGAAACGTGCTCCGTCGTATTCTTTGTTC 1314
Query 1306 GACACGTGTTTTGATCTCTCGGGAATGACGACTGTGAAGGTTCCGACGGTTGTGTTTCAT 1365
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct 1315 GACACGTGTTTTGATCTCTCGGGAATGACGACTGTGAAGGTTCCGACGGTGGTGTTCCAT 1374
Query 1366 TTCGGAGGCGGAGAGGTTTCGCTTCCGGCGAGTAATTATCTGATCCCGGTTAACACTGAA 1425
|||||||| ||||||||||| ||||||||||||||||||||||| ||||| |||||||||
Sbjct 1375 TTCGGAGGTGGAGAGGTTTCACTTCCGGCGAGTAATTATCTGATTCCGGTGAACACTGAA 1434
Query 1426 GGACGGTTCTGTTTTGCGTTTGCCGGAACTATGGGGAGTTTGTCAATCATTGGAAACATA 1485
|||||||||||||||||||| ||||||||||||||||||||||| || ||||||||||||
Sbjct 1435 GGACGGTTCTGTTTTGCGTTCGCCGGAACTATGGGGAGTTTGTCGATAATTGGAAACATA 1494
Query 1486 CAGCAACAAGGTTTCCGGGTCGCTTATGACTTGGTCGGGTCACGGGTCGGGTTTTTGTCT 1545
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1495 CAGCAACAAGGTTTCCGGGTCGCTTACGACTTGGTCGGGTCACGGGTCGGGTTTTTGTCT 1554
Query 1546 CGCGCGTGTTAGATTTTGAGCTTGAGTTGACTGATTTATT-CC-CAAAG 1592
|||||||||||||||||||| ||||||||||||||||||| || |||||
Sbjct 1555 CGCGCGTGTTAGATTTTGAGTTTGAGTTGACTGATTTATTTCCACAAAG 1603
Score = 104 bits (56), Expect = 2e-21
Identities = 65/69 (94%), Gaps = 1/69 (1%)
Strand=Plus/Plus
Query 1612 ACAAAGCAAATTATCAAACATTGTTATCATCATCGACT-ATCATACTACTCATTAGTCAT 1670
|||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||
Sbjct 1598 ACAAAGCAAATTATCAAACATTGTTATCATCATCGACTTATCTTACTACTCATTAGTCAT 1657
Query 1671 CATTCATGA 1679
||| ||||
Sbjct 1658 GATTAATGA 1666
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 68600531245
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5