BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G61860.1 Length=1183 Score E Sequences producing significant alignments: (Bits) Value Ahg486690 jgi|Araly1|486690|fgenesh2_kg.5__2682__AT3G61860.1 1376 0.0 > Ahg486690 jgi|Araly1|486690|fgenesh2_kg.5__2682__AT3G61860.1 Length=1105 Score = 1376 bits (745), Expect = 0.0 Identities = 840/887 (95%), Gaps = 2/887 (0%) Strand=Plus/Plus Query 72 GTCGTCGTCGTCGTCTAGGGTTTGTTTTTCGTTTCTTCTCCGATTG-TTCAGAGGAATTG 130 |||||||||||| |||||||||||||| |||||||||||||||| | || |||||| ||| Sbjct 29 GTCGTCGTCGTCCTCTAGGGTTTGTTTATCGTTTCTTCTCCGATCGTTTAAGAGGACTTG 88 Query 131 CGAATTAAGATAAAGATGAGGCCAGTGTTCGTCGGCAATTTCGAGTATGAAACTCGCCAG 190 || |||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 89 CGGATTAAGATAAAGATGAGGCCAGTGTTCGTCGGCAATTTCGAGTACGAAACTCGCCAG 148 Query 191 TCGGATCTGGAACGGTTGTTCGACAAGTATGGGAGAGTCGACCGAGTGGACATGAAATCT 250 |||||| ||||||| |||||||||||||||||||||||||| |||||||||||||||||| Sbjct 149 TCGGATTTGGAACGATTGTTCGACAAGTATGGGAGAGTCGAGCGAGTGGACATGAAATCT 208 Query 251 GGATATGCTTTTGTGTACTTTGAGGATGAACGTGATGCTGAAGACGCTATTCGCAAACTC 310 |||||||||||||||||||||||||||||||||||||||||||| || |||||||| || Sbjct 209 GGATATGCTTTTGTGTACTTTGAGGATGAACGTGATGCTGAAGATGCGATTCGCAAGCTT 268 Query 311 GACAATTTTCCTTTTGGATATGAGAAACGCAGGTTATCAGTTGAATGGGCAAAGGGTGAA 370 |||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 269 GACAATTTCCCTTTTGGATATGAGAAACGCAGATTATCAGTTGAATGGGCAAAGGGTGAA 328 Query 371 CGTGGCAGGCCTCGTGGTGACGCGAAAGCCCCTTCAAATCTGAAGCCTACAAAGACACTG 430 |||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||| Sbjct 329 CGTGGCAGGCCTCGTGGTGATGCGAAAGCCACTTCAAATCTGAAGCCTACAAAGACACTA 388 Query 431 TTTGTCATTAACTTTGACCCCATTAGAACAAAAGAGCACGACATTGAAAAACACTTTGAG 490 ||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||| Sbjct 389 TTTGTCATTAACTTTGACCCCATTACAACAAAAGAGCACGACATTGAAAAGCACTTTGAG 448 Query 491 CCCTATGGTAAGGTCACCAACGTGCGTATCAGACGCAACTTCTCATTTGTTCAGTTTGAA 550 ||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 449 CCCTACGGTAAGGTCACCAATGTGCGTATCAGACGCAACTTCTCATTTGTTCAGTTTGAA 508 Query 551 ACACAAGAGGATGCTACAAAAGCCCTTGAAGCTACTCAAAGAAGCAAAATATTGGATAGG 610 |||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 509 ACACAAGAAGATGCCACAAAAGCCCTTGAAGCTACTCAAAGAAGCAAAATATTGGATAGG 568 Query 611 GTTGTTTCCGTGGAGTATGCGTTGAAAGATGACGATGAAAGAGATGATCGAAATGGTGGT 670 |||||||| ||||||||||| ||||| |||||||||||||||||||||||| |||||||| Sbjct 569 GTTGTTTCTGTGGAGTATGCCTTGAAGGATGACGATGAAAGAGATGATCGATATGGTGGT 628 Query 671 CGTAGCCCGAGAAGGTCTCTTAGTCCTGTGTATCGTAGGCGTCCAAGTCCAGATTATGGC 730 |||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||| Sbjct 629 CGTAGCCCGAGAAGATCTCTTAGTCCTGTGTACCGTAGGCGTCCAAGTCCAGATTATGGT 688 Query 731 AGGCGTCCAAGCCCTGGTCAGGGTAGGCGTCCAAGTCCAGATTATGGTCGTGCTCGAAGC 790 ||||||||||| || | | | ||||||||||||||||||||| |||||||||| |||||| Sbjct 689 AGGCGTCCAAGTCCAGATTATGGTAGGCGTCCAAGTCCAGATAATGGTCGTGCACGAAGC 748 Query 791 CCAGAATACGACAGATACAAAGGTCCAGCAGCTTATGAAAGACGGAGGAGTCCAGATTAT 850 ||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||| Sbjct 749 CCAGAATACGACAGATACAAAGGTCCAACAGCTTATGAAAGACGCAGGAGTCCAGATTAT 808 Query 851 GGACGAAGGAGTTCTGATTATGGTAGACAAAGGAGCCCTGGTTATGACCGATACAGAAGT 910 |||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||| Sbjct 809 GGACGAAGGAGTTCTGATTATGGTAGACCAAGGAGTCCTGGTTATGACCGATACAGAAGT 868 Query 911 CGTTCTCCAGTCCCAAGAGGAAGACCTTGAT-CAATGCAGAAAACAG 956 |||||||||||||||||||||||||||||| |||||||||| |||| Sbjct 869 CGTTCTCCAGTCCCAAGAGGAAGACCTTGAAACAATGCAGAACACAG 915 Score = 219 bits (118), Expect = 5e-56 Identities = 166/187 (89%), Gaps = 11/187 (6%) Strand=Plus/Plus Query 997 TATGTTGTGTTTTGAGTTAGAAGATGCTTTTTGATGTTTTGAAATCCTT-GTTAACTTTG 1055 |||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||| Sbjct 920 TATGTTGTGTTTTGAGTTAGAAGATGCTTTTTGATGTTTTGAAAGCCTTTGTTAACTTTG 979 Query 1056 GGATCTTAGACTTTTATCTTAAAATCAGTAGAAACTTCATAATGGCGCTTT---GTCACG 1112 ||||||||||||||||||| ||||| ||||||||| |||| |||||||||| || ||| Sbjct 980 GGATCTTAGACTTTTATCTCAAAATTAGTAGAAACCTCATCATGGCGCTTTTTTGTTACG 1039 Query 1113 ATCTGTTA------CTTGGTTCATATACTCTTTTCATTCGTCATTAATTATTCTAAATCC 1166 || ||||| |||||||||| ||| ||||| ||||||||| ||||||||||||||| Sbjct 1040 ATATGTTATTATTACTTGGTTCATGTACCCTTTTGATTCGTCAT-AATTATTCTAAATCC 1098 Query 1167 CATATAA 1173 ||||||| Sbjct 1099 CATATAA 1105 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 44146337886 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5