BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G61870.1
Length=1058
Score E
Sequences producing significant alignments: (Bits) Value
Ahg486691 jgi|Araly1|486691|fgenesh2_kg.5__2683__AT3G61870.1 1435 0.0
> Ahg486691 jgi|Araly1|486691|fgenesh2_kg.5__2683__AT3G61870.1
Length=1002
Score = 1435 bits (777), Expect = 0.0
Identities = 953/1031 (92%), Gaps = 40/1031 (4%)
Strand=Plus/Plus
Query 1 AGGATGTCTCTATTGTTTCTTCTTCACTCTTTTTGCCACAATCTCTGTTCC---A----A 53
||||||||||| ||| | |||||||||| ||||||||||||||||||||| | |
Sbjct 1 AGGATGTCTCTCTTG--T-TTCTTCACTC-TTTTGCCACAATCTCTGTTCCAAGACCCGA 56
Query 54 GA-ATCGCGAGTATGGCGACCACACTTCATTGTCTCTCCACACTCCATCTTCTTCCTCGC 112
|| | | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 57 GAGAGAGAGAGTATGGCGACCACACTTCATTGTCTCTCCACACTCCATCTTCTTCCTCGC 116
Query 113 ACTCATCACCCTAAAACCCTAAACTCTCTCAAACCAATCACCACCAAATCACAACCATGT 172
|| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 117 ACCCATCACCCTAAAACCCTAAACTCTCTCAAACCAAT---CACCAAATCACAACCATGC 173
Query 173 AAAACCCCAGAAATACCCTCCACTCCCAACGCTCTTCAGCTCCTTAAATCATCCTCTCTC 232
|||| |||||| ||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct 174 AAAATCCCAGATATACCCTCCACTCCCAACGCTCTCCAACTCCTTAAATCATCCTCTCTC 233
Query 233 CCTCTCGCAGTCATCGCATTGCCTTTCTTCCTCGACCCACAGGATGCAGCAGCAGCTGGA 292
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 234 CCTCTCGCAGTCATCGCATTGCCTTTCTTCCTCGACCCACAGGATGCAGCAGCAGCTGGA 293
Query 293 GGAGAATTCGGAATATTAGAAGGGAGATCATTTGCGTTGATACACCCAATTGTGATGGGA 352
|||||||| || ||||| ||||| |||||||||||||| |||||||||||||||||||||
Sbjct 294 GGAGAATTTGGGATATTGGAAGGAAGATCATTTGCGTTAATACACCCAATTGTGATGGGA 353
Query 353 GGTTTATTTGCATACACTCTTTGGACTGGTTACTTAGGTTGGCAATGGAGACGTGTCCGT 412
|||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 354 GGTTTATTCGCATACACTCTTTGGGCTGGTTACTTAGGTTGGCAATGGAGACGTGTCCGT 413
Query 413 ACGATACAGAGTGAGATTAGTGATCTCAAGAAACAGCTTAAACCAACTCCTGTTTCCCCT 472
||||||||||||||||| ||||| |||||||||||||||||||||||||||||||| |||
Sbjct 414 ACGATACAGAGTGAGATCAGTGAGCTCAAGAAACAGCTTAAACCAACTCCTGTTTCTCCT 473
Query 473 GATGGTTCCACAGCCGTTGATTCTTCGTCGCCTCCTTCTACGACTGAGCTTCAGATCCAA 532
||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 474 GATGGATCCACTGCCGTTGATTCTTCGTCGCCTCCTTCTACGACTGAGCTTCAGATCCAA 533
Query 533 CGGCTAACTGAAGAGAGGAAAGAGTTGGTCAAAGGGTCTTACAGAGACAAACACTTTGAC 592
||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 534 CGGCTGACAGAAGAGAGGAAAGAGTTGGTCAAAGGGTCTTACAGAGACAAACACTTTGAC 593
Query 593 GCTGGCTCTGTTTTGTTAGGTTTCGGTGTTTTGGAAGCTGTCTTTGGTGGTGTTAACACT 652
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 594 GCTGGCTCTGTTTTGTTAGGTTTTGGTGTTTTGGAAGCTGTCTTTGGTGGTGTTAACACT 653
Query 653 TATCTTCGTACTGGTAAACTCTTCCCCGGTCCTCATCTTTACGCCGGTGCAGGAATAACG 712
||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 654 TATCTTCGTACCGGTAAACTATTCCCCGGTCCTCATCTTTACGCCGGTGCAGGAATAACG 713
Query 713 GTGTTGTGGGCGGCGGCGGCAGCATTGGTGCCGGCAATGCAGAAAGGGAACGATACGGCG 772
|||||||||||||||||||| ||||| |||||||||||||||||||||||||| ||||||
Sbjct 714 GTGTTGTGGGCGGCGGCGGCTGCATTAGTGCCGGCAATGCAGAAAGGGAACGAGACGGCG 773
Query 773 AGGAGTCTACATATAGCGTTGAATGCAGTAAATGTTCTTCTTTTCATTTGGCAAATCCCA 832
||||||||||| || ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 774 AGGAGTCTACACATTGCGTTGAATGCAGTAAATGTTCTTCTTTTCATTTGCCAAATCCCA 833
Query 833 ACAGGTCTTGATATCGTTCTTAAGGTCTTTGAGTTCACTAAATGGCCATAGATATTAATA 892
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
Sbjct 834 ACAGGTCTTGATATCGTCCTTAAGGTCTTTGAGTTCACTAAATGGCCATAGATATTA-T- 891
Query 893 TTTGGATGTGTTATTTATGAGTTTGTGACTCTATATATGCAAATATTCTTCAACtttttt 952
| | || || || ||||||||||||||||||||| ||||||||||
Sbjct 892 ---G-A-GT-TT------GA--------CTCTATATATGCAAATATTCTGCAACTTTTTT 931
Query 953 t-GAGGTTTGTAGATGATGAA-TTGTAA-AAATCATGCAATTAGAGTGGATATTGGAATA 1009
| |||||||||| |||||||| |||||| |||||||||||||||||| |||||||||||
Sbjct 932 TTGAGGTTTGTAAATGATGAAATTGTAAGAAATCATGCAATTAGAGTTAATATTGGAATA 991
Query 1010 ATGGTGGAAAA 1020
|||||||||||
Sbjct 992 ATGGTGGAAAA 1002
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39380973261
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5