BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G61880.2 Length=1847 Score E Sequences producing significant alignments: (Bits) Value Ahg939260 jgi|Araly1|939260|scaffold_503451.1 2556 0.0 Ahg483830 jgi|Araly1|483830|fgenesh2_kg.4__2890__AT2G46660.1 1101 0.0 > Ahg939260 jgi|Araly1|939260|scaffold_503451.1 Length=1666 Score = 2556 bits (1384), Expect = 0.0 Identities = 1540/1617 (95%), Gaps = 4/1617 (0%) Strand=Plus/Plus Query 49 tctctTGTTCCTCTGCATCCATGGCCACCAAGCTCGACACCAGTAGCTTACTTTTGGCCC 108 ||| ||| |||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 1 TCTTTTGCTCCTCTGCTTCCATGGCCACCAAGCTCGACACCAGTAGCTTACTTTTGGCCA 60 Query 109 TCTTGTCCAAATGTAGCCTCCTTACTCAAACCAAtcttgctctctctctcctcgtagcct 168 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 61 TCTTCTCCAAATGTAGCCTCCTTACTCAAACCAATCTTGCTCTCTCTCTCCTCGTAGCCT 120 Query 169 ccctagcttctctcgctctttctctcttcttctggtctcATCCCGGAGGACCCGCATGGG 228 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 121 CCCTTGCTTCTCTCGCTCTTTCTCTCTTCTTCTGGTCTCATCCCGGAGGACCCGCATGGG 180 Query 229 GAAAGTACTTCCTCCACCGCCGCCGTCAAACCACCGTGATACCCGGGCCAAGAGGCTTAC 288 |||||||||||||||| |||||||||||||||||||| ||||| || ||||||||||||| Sbjct 181 GAAAGTACTTCCTCCATCGCCGCCGTCAAACCACCGTAATACCTGGACCAAGAGGCTTAC 240 Query 289 CTTTTGTCGGAAGCATGTCTCTCATGTCAAACACTCTGGCTCACCGTTGCATAGCCGCAA 348 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 241 CTTTTGTCGGAAGCATGTCTCTCATGTCAAGTGCTCTGGCTCACCGTTGCATAGCCGCAA 300 Query 349 CCGCAGAGAAATTTAGAGCCGAACGGTTAATGGCGTTTAGTTTGGGAGAAACTCGCGTGA 408 ||||||| |||||| ||||| |||| |||||||||||||| || |||||||||||||||| Sbjct 301 CCGCAGAAAAATTTGGAGCCAAACGTTTAATGGCGTTTAGCTTAGGAGAAACTCGCGTGA 360 Query 409 TCGTCACGTGCAATCCTGATGTAGCTAAAGAGATTCTAAACAGTCCGGTTTTCGCTGACC 468 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 361 TCGTCACGTGCAATCCTGATGTAGCTAAAGAGATTCTAAACAGTCCGGTTTTTGCTGACC 420 Query 469 GCCCGGTTAAGGAATCAGCTTATTCCCTCATGTTTAACCGTGCTATCGGTTTCGCTCCTT 528 | ||||||||||||||||||||||| || ||||||||||| |||||||||||||| |||| Sbjct 421 GACCGGTTAAGGAATCAGCTTATTCTCTTATGTTTAACCGAGCTATCGGTTTCGCACCTT 480 Query 529 ACGGCGTTTACTGGCGAACCTTGAGAAAAATCGCGTCTAATCATCTTTTCAGCCCGAAAC 588 ||||||||||||||||||||||||||| ||||||||||||||||||||| || ||||||| Sbjct 481 ACGGCGTTTACTGGCGAACCTTGAGAAGAATCGCGTCTAATCATCTTTTTAGTCCGAAAC 540 Query 589 AGATTAAACGTTCCGAAACGCAGAGAAGCGTGATCGCGAATCAAATCGTGAAGTGTCTCA 648 |||||||||||||||||||||||||| | | |||||| ||||| ||||| |||||||| Sbjct 541 AGATTAAACGTTCCGAAACGCAGAGACGTGAGATCGCCAATCAGATCGTCAAGTGTCTTG 600 Query 649 CAAAACAGAGTAACACCAAAGGTCTCTGTTTCGCACGTGACTTGATCAAAACGGCATCGC 708 ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 601 CAAAACAGAGTAACACCAAAGGTCTCTGTTTTGCACGTGACTTGATCAAAACGGCATCGC 660 Query 709 TTAATAACATGATGTGCTCTGTTTTCGGAAAAGAATACGAGCTTGAGGAA-GAGCATGAA 767 ||||||||||||||||||||||||| ||||||||||| |||||||| ||| ||||||||| Sbjct 661 TTAATAACATGATGTGCTCTGTTTTTGGAAAAGAATATGAGCTTGA-GAACGAGCATGAA 719 Query 768 GAAGTGAGTGAGCTACGTGAATTGGTGGAAGAAGGTTATGATTTACTCGGTACACTGAAT 827 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||| Sbjct 720 GAAGTGAGTGAGCTACGTGGATTGGTGGAAGAAGGTTATGATTTACTCGGTACACTTAAT 779 Query 828 TGGACCGATCATCTCCCATGGCTCTCTGAATTTGATCCTCAAAGAATCCGGTCTAGATGC 887 |||||||||||||||||||||||||| || ||||||||||| |||||||||||||||||| Sbjct 780 TGGACCGATCATCTCCCATGGCTCTCGGAGTTTGATCCTCAGAGAATCCGGTCTAGATGC 839 Query 888 TCTAATCTCGTCCCAAAAGTAAACCGGTTTGTGAACCGGATTATCTCTGACCACCGTGAA 947 || |||||||| || |||||||||||||||||||||||||||||||||||||||||||| Sbjct 840 TCCAATCTCGTACCGAAAGTAAACCGGTTTGTGAACCGGATTATCTCTGACCACCGTGAT 899 Query 948 CAAACTCGTGACTCACCGAGTGACTTCGTTGACGTATTGCTCTCTCTCGATGGTCCTGAT 1007 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 900 CAAACTCGTGACTCACCGAGTGACTTCGTTGACGTATTGCTCTCTCTTGATGGTCCTGAT 959 Query 1008 AAATTATCCGACCCTGATATCATCGCCGTTCTATGGGAAATGATATTCAGAGGAACTGAC 1067 ||||||||||||||||||||| |||| ||||| ||||||||||||||||||||||||||| Sbjct 960 AAATTATCCGACCCTGATATCGTCGCTGTTCTCTGGGAAATGATATTCAGAGGAACTGAC 1019 Query 1068 ACGGTGGCTGTTTTGATCGAGTGGATTCTTGCTAGGATGGTCCTTCATCCAGATATTCAA 1127 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 1020 ACGGTGGCTGTTTTGATCGAGTGGATTCTTGCTAGGATGGTCCTACATCCAGATATTCAA 1079 Query 1128 TCGACGGTTCACAATGAGCTTGATCAAATCGTGGGACGATCAAGGGCTGTCGAAGAGTCT 1187 |||||||||||||||||||||||||||||||||||| ||||||| || |||||||||||| Sbjct 1080 TCGACGGTTCACAATGAGCTTGATCAAATCGTGGGAAGATCAAGAGCCGTCGAAGAGTCT 1139 Query 1188 GACGTGGTGTCTCTAGTA-TATCTAACGGCTGTGGTGAAAGAAGTCTTGAGGCTTCACCC 1246 ||||||| ||| ||| | |||||||||||||| |||||||||||||||||||||||||| Sbjct 1140 GACGTGGCATCTTTAG-AGTATCTAACGGCTGTTGTGAAAGAAGTCTTGAGGCTTCACCC 1198 Query 1247 GCCAGGCCCACTACTCTCATGGGCCCGTTTAGCAATCACAGACACGATCATCGACGGTCG 1306 |||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||| | Sbjct 1199 GCCAGGCCCACTACTCTCTTGGGCCCGTTTAGCAATCACAGATACGATCATCGACGGTTG 1258 Query 1307 TCGTGTTCCGGCGGGGACCACCGCAATGGTGAACATGTGGGCTATTGCACACGATCCACA 1366 |||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 1259 TCGTGTTCCGGCTGGGACCACCGCAATGGTGAACATGTGGGCTATAGCACACGATCCACA 1318 Query 1367 CGTGTGGGAGAATCCGTTGGAGTTTAAACCCGAACGTTTTGTAGCCAAGGAAGGTGAGGT 1426 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1319 CGTGTGGGAGAATCCGTTGGAGTTTAAACCCGAACGTTTTGTAGCCAAGGAAGGTGAGGT 1378 Query 1427 TGAGTTCTCGGTTCTTGGGTCTGATTTGAGGCTTGCACCGTTCGGGTCCGGTCGTCGGGT 1486 ||||||||||||||||||||| ||||||||||| |||||||||||||| ||||||||||| Sbjct 1379 TGAGTTCTCGGTTCTTGGGTCGGATTTGAGGCTAGCACCGTTCGGGTCGGGTCGTCGGGT 1438 Query 1487 TTGCCCCGGGAAGAATCTTGGTTTGACCACCGTGACGTTTTGGACTGCGACGCTTTTGCA 1546 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1439 TTGCCCCGGGAAGAATCTTGGTTTGACCACCGTGACGTTTTGGACTGCGACGCTTTTGCA 1498 Query 1547 TGAGTTTGAATGGCTGACGCCGTCCGATGAGAAGACCGTTGACTTGTCCGAGAAACTGAG 1606 ||||||||||||||| || |||||||||||||||||||||||||||||||||||||||| Sbjct 1499 TGAGTTTGAATGGCTAACATCGTCCGATGAGAAGACCGTTGACTTGTCCGAGAAACTGAG 1558 Query 1607 GCTCTCGTGTGAGATGGCTAATCCTCTTGCTGCTAAATTACGCCCCAGGCGCAGTTT 1663 |||||||||||||||||||||||||||||||| |||||||||||||||||| ||||| Sbjct 1559 GCTCTCGTGTGAGATGGCTAATCCTCTTGCTGGTAAATTACGCCCCAGGCGTAGTTT 1615 > Ahg483830 jgi|Araly1|483830|fgenesh2_kg.4__2890__AT2G46660.1 Length=1817 Score = 1101 bits (596), Expect = 0.0 Identities = 1286/1610 (80%), Gaps = 84/1610 (5%) Strand=Plus/Plus Query 95 CTTACT-TTTGGCCCTCTTGTCCAAATGTAGCCTCCTTA-CTCAAACCAAtc-ttgctct 151 |||| | ||| ||||| ||||||||||| ||| | || | | ||||| || | | ||| | Sbjct 93 CTTAATCTTT-GCCCTTTTGTCCAAATGCAGCGTTCTAAGC-CAAACTAA-CATCGCTTT 149 Query 152 ctctctcctcgtagcc-tccctagcttct--ctcgctc-tttctctcttcttctgg-tct 206 |||||||||| ||| | | | | ||| ||||| | | ||||||||||||||| || Sbjct 150 CTCTCTCCTC---GCCGTTACAATCATCTGGCTCGC-CGTCTCTCTCTTCTTCTGGACCT 205 Query 207 cATCCCGGAGGACCCGCATGGGG-AAAGT--ACTTCC-TC----CACCGCC-G-CCGT-C 255 ||||||| ||||| || ||||| ||| | ||||| || || || | | | | Sbjct 206 -ATCCCGGTGGACCTGCTTGGGGTAAATTCCTCTTCCGTCGGTTTACATCCGGTTCATAC 264 Query 256 -AAACC---ACCGTGATACCCGGGCCAAGAGGCTTACCTTTTGTCGGAAGCATGTCTCTC 311 ||||| | ||| || ||||| ||||||||||| ||||| || ||||||||||| ||| Sbjct 265 AAAACCGGAAACGTTATTCCCGGTCCAAGAGGCTTGCCTTTGGTTGGAAGCATGTCACTC 324 Query 312 ATGTCAAACACTCTGGCTCACCGTTGCATAGCCGCA-ACCGCAGAGAAATTTAGAGCCGA 370 ||||||| |||||| |||||||| | || || | | || |||||||| ||||| | Sbjct 325 ATGTCAAGCACTCTAGCTCACCGACGAATCGCTG-ATGTTGCTGAGAAATTCGGAGCC-A 382 Query 371 A-CGGTTAATGGCGTTT-AGTTTGGGAGAAACTCGCGTGATCGTCACGTGCAATCCTGAT 428 | || | ||||| ||| || || ||||| |||||||||||||||||||||||||| || Sbjct 383 AGAGGCTCATGGC-TTTCAGCTTAGGAGAGACTCGCGTGATCGTCACGTGCAATCCCGAC 441 Query 429 GTAGCTAAAGAGATTCTAAACAGTCCGGTTTTCGCTGACCGCCCGGTTAAGGAATCAGCT 488 || || ||||||||||| || | |||||||| |||||||| |||||||| ||||| ||| Sbjct 442 GTCGCGAAAGAGATTCTGAATTGCCCGGTTTTTGCTGACCGACCGGTTAAAGAATCGGCT 501 Query 489 TATTCCCTCATGTTTAACCGTGCTATCGGTTTCGCTCCTTACGGCGTTTACTGGCGAAC- 547 || || || ||||||||| | || || ||||| || || |||| |||||||||||||| Sbjct 502 TACTCTCTGATGTTTAACAGAGCAATTGGTTTTGCACCACACGGTGTTTACTGGCGAACG 561 Query 548 CTTGAGAAAAATCGCGTCTAATCATCT-TTTCAGCCCGAAACAGATTAAACGTTCCGAAA 606 ||| | ||||| || || ||||| ||| || || ||||| || | ||| |||| | Sbjct 562 CTT-CGCCGTATCGCTTCGAACCATCTCTTT-AGTCCAAAACAAATCAGACGAGCCGAGA 619 Query 607 CGCAGAGAAGCGTG--ATCGCGAATCAAATCG-TGAAGTGTCTCACAAAACAGAGTAACA 663 ||||| | ||| | ||||| | || || | || || ||| |||||||| | | Sbjct 620 CGCAGCG--GCGGGAAATCGCTAGCCAGATGGTTG-GGTTTCTTGGAAAACAGACT---A 673 Query 664 CCAAAGGTCTCTGTTTCGCACGTGACTTGATCAAAACGGCATCGCTTAATAACATGATGT 723 || || |||||||| | ||||| ||| | |||||||| |||||||| |||||||||| Sbjct 674 GTAACGGACTCTGTTTTGTTCGTGAGTTGCTTAAAACGGCGTCGCTTAACAACATGATGT 733 Query 724 GCTCTGTTTTCGGAAAAGAATACGAGCTTGAGGAAGAGCATGAAGAAGTGAGTGAGCTAC 783 |||||||||||||| |||| || |||||| | | | || || | || |||| ||| Sbjct 734 GCTCTGTTTTCGGACAAGAGTATGAGCTT---G-A-A-CA-AAACCA-TG-TTGAGTTAC 784 Query 784 GTGAATTGGTGGAAGAAGGTTATGATTTACTCGGTACACTGAATTGGACCGATCATCTCC 843 |||||||||| ||| ||||||||||||||||||| ||| ||||||||||||||||||| | Sbjct 785 GTGAATTGGTCGAACAAGGTTATGATTTACTCGGAACATTGAATTGGACCGATCATCTTC 844 Query 844 CATGGCTCTCTGAATTTGATCCTCAAAGAATCCGGTCTAGATGCTCTA-ATCTCGTCCCA 902 | ||||| | ||||||||||||||| |||||||||||||||| || | | ||||| || Sbjct 845 CTTGGCTATTTGAATTTGATCCTCAGGGAATCCGGTCTAGATGTTCCACA-CTCGTACCG 903 Query 903 AAAGTAAACCGGTTTGTGA-ACCGGATTATCTCTGACCACCGTGAACAAACTC-GTGACT 960 || |||||||||||||| | ||||||||| ||||| |||||| | ||||| | |||| | Sbjct 904 AAGGTAAACCGGTTTGT-ATCCCGGATTATATCTGAACACCGTCATCAAAC-CGGTGATT 961 Query 961 CACCGAGTGACTTCGTTGACGTATTGCTCTCTCTCGATGGTCCTGATAAATTATCCGACC 1020 | || |||| ||||| ||||| |||||||| ||| ||||| | ||||||||||| |||| Sbjct 962 CGCCTCGTGATTTCGTCGACGTTTTGCTCTCCCTCCATGGTTCAGATAAATTATCGGACC 1021 Query 1021 CTGATATCATCGCCGTTCTATGGGAAATGATATTCAGAGGAACTGACACGGTGGCTGTTT 1080 | || || ||||||||||| ||||| ||||||||||||||||| ||||| || || |||| Sbjct 1022 CGGACATAATCGCCGTTCTTTGGGAGATGATATTCAGAGGAACAGACACAGTTGCGGTTT 1081 Query 1081 TGATCGAGTGGATTCTTGCTAGGATGGTCCTTCATCCAGATATTCAATCGACGGTTCACA 1140 | || |||||| | || |||||||||||||||||||||||||||||||| ||||| || | Sbjct 1082 TAATTGAGTGGGTCCTCGCTAGGATGGTCCTTCATCCAGATATTCAATCAACGGTACAAA 1141 Query 1141 ATGAGCTTGATCAAATCGTGGGACGATCAAGGGCTGTCGAAGAGTCTGACGTGG-TGTCT 1199 | ||||| |||||||| || ||| |||||| || || || || |||||| ||| | || Sbjct 1142 ACGAGCTAGATCAAATAGTCGGAAAATCAAGAGCCGTAGATGAATCTGACTTGGCT-TCA 1200 Query 1200 CTAG-TATATCTAACGGCTGTGGTGAAAGAAGTCTTGAGGCTTCACCCGCCAGGCCCACT 1258 || | |||||||||||||| ||||||||||| ||||||||||| || ||||||||||| Sbjct 1201 CTTCCT-TATCTAACGGCTGTAGTGAAAGAAGTATTGAGGCTTCATCCTCCAGGCCCACT 1259 Query 1259 ACTCTCATGGGCCCGTTTAGCAATCACAGACACGATCATCGACGGTCGTCGTGTTCCGGC 1318 || |||||||||||||| || || |||||||||||| | || ||||||| ||||||||| Sbjct 1260 TCTATCATGGGCCCGTTTGGCCATAACAGACACGATCGTTGATGGTCGTCTTGTTCCGGC 1319 Query 1319 GGGGACCACCGCAATGGTGAACATGTGGGC--TATTGCACACGATCCACACGTGTGGGA- 1375 |||||||| |||||||||||||||||||| ||| ||| |||||||||||||||| Sbjct 1320 AGGGACCACAGCAATGGTGAACATGTGGGCCGTATCGCAT--GATCCACACGTGTGGGTT 1377 Query 1376 GAATCCGTTGGAGTTTAAACCCGA-ACGTTTTGTAGCCAAGGAAGGTGAGGTTGAGTTCT 1434 || ||| |||||||||||||| || | ||| || || || |||||||||| ||||| | Sbjct 1378 GA-TCCTTTGGAGTTTAAACCTGAGAGGTTC-GTGGCAAAACAAGGTGAGGTGGAGTTTT 1435 Query 1435 CGGTTCTTGGGTCTGATTTGAGGCTTGCACCGTTCGGGTCCGGTCGTCGGGTTTGCCCCG 1494 | ||||| ||||| |||||||| ||||||||||||||||| ||||||||||||||||||| Sbjct 1436 CAGTTCTCGGGTCGGATTTGAGACTTGCACCGTTCGGGTCGGGTCGTCGGGTTTGCCCCG 1495 Query 1495 GGAAGAATCTTGGTTTGACCACCGTGACGTTTTGGACTGCGACGCTT-TTGCATGAGTTT 1553 |||| |||||||||||||| ||||| ||||||||||| ||| || || || ||||||||| Sbjct 1496 GGAAAAATCTTGGTTTGACTACCGTTACGTTTTGGACGGCGGCG-TTGTTACATGAGTTT 1554 Query 1554 GAATGGCTGACGCCGTCCGATGAGAA-GACCGTTGACTTGTCCGAGAAACTGAGGCTCTC 1612 |||||| ||| | |||||||| ||| | | |||||||| || |||||||||||||| || Sbjct 1555 GAATGGG-GAC-C-GTCCGATGGGAACGGC-GTTGACTTATCTGAGAAACTGAGGCTTTC 1610 Query 1613 GTGTGAGATGGCTAATCCTCTTGCTGCTAAATTACGCCCCAGGCGCAGTT 1662 |||||||||||||||||||||||||||||||| || | |||||||||| Sbjct 1611 TTGTGAGATGGCTAATCCTCTTGCTGCTAAATTGCGTCGTAGGCGCAGTT 1660 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 69362336145 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5