BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G61890.1 Length=986 Score E Sequences producing significant alignments: (Bits) Value Ahg486694 jgi|Araly1|486694|fgenesh2_kg.5__2686__AT3G61890.1 1570 0.0 > Ahg486694 jgi|Araly1|486694|fgenesh2_kg.5__2686__AT3G61890.1 Length=978 Score = 1570 bits (850), Expect = 0.0 Identities = 936/978 (96%), Gaps = 4/978 (0%) Strand=Plus/Plus Query 13 aaaaaaGAAACAAATAATTCCAAAACCTTCTCTCTTAATCAAAATCAAGAAACTTACAAG 72 ||| |||||||||||||||||||||||||||||||||||| |||||||||||||| |||| Sbjct 1 AAAGAAGAAACAAATAATTCCAAAACCTTCTCTCTTAATCGAAATCAAGAAACTTGCAAG 60 Query 73 ATCTGGTGAAAACCATGGAAGAAGGAGATTTTTTCAACTGCTGTTTCAGCGAGATTAGTA 132 ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| || Sbjct 61 ATCTGGTGAAAACCATGGAAGAAGGAGATTTTTTCAACTGCTGCTTCAGCGAGATTAATA 120 Query 133 GTGGCATGACCATGAATAAGAAGAAGAT---GAAGAAGAGCAATAACCAAAAGAGGTTTA 189 |||||||||||||||||||||||||||| |||||||||||||| ||| |||||||||| Sbjct 121 GTGGCATGACCATGAATAAGAAGAAGATGAAGAAGAAGAGCAATAGCCAGAAGAGGTTTA 180 Query 190 GCGAGGAACAGATCAAGTCACTTGAGCTTATATTTGAGTCTGAGACGAGGCTTGAGCCGA 249 |||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||| Sbjct 181 GCGAGGAACAGATCAAGTCACTTGAGCTTATATTTGAGTCCGAGACGAGGCTTGAACCGA 240 Query 250 GGAAGAAGGTTCAGGTAGCTAGAGAGCTAGGGCTGCAACCAAGACAAGTGGCTATATGGT 309 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 241 GGAAGAAGGTTCAGGTAGCTAGAGAGCTAGGGCTGCAACCAAGACAAGTGGCTATATGGT 300 Query 310 TTCAAAACAAGAGGGCTCGATGGAAAACTAAGCAACTTGAGAAAGAGTATAACACTCTTA 369 |||| |||||||||||||| |||||||||||||||||||||||||||||||||| |||| Sbjct 301 TTCAGAACAAGAGGGCTCGTTGGAAAACTAAGCAACTTGAGAAAGAGTATAACATTCTTC 360 Query 370 GAGCCAATTACAACAATTTGGCTTCACAATTTGAAATCATGAAGAAAGAAAAGCAATCTC 429 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 361 GATCCAATTACAACAATTTGGCTTCACAATTTGAAATCATGAAGAAAGAAAAGCAATCTC 420 Query 430 TGGTCTCTGAGCTGCAGAGACTAAACGAAGAGATGCAAAGGCCTAAAGAAGAAAAGCATC 489 | ||||||||| ||||||||||||| || |||||||||| |||||||||||||||||||| Sbjct 421 TTGTCTCTGAGTTGCAGAGACTAAATGAGGAGATGCAAAAGCCTAAAGAAGAAAAGCATC 480 Query 490 ATGAGTGTTGTGGTGATCAAGGACTGGCTCTAAGCAGCAGCACAGAGTCGCATAATGGAA 549 ||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||| Sbjct 481 ATGAGTGTTGTGGTGATCAAGGAGTGGCTCTAAGCAGCAGCACAGAGTTGCATAATGGAA 540 Query 550 AGAGTGAGCCAGAAGGGAGGTTAGACCAAGGGAGTGTTCTATGTAATGATGGTGATTACA 609 ||||||||||||||| ||||||| ||||||||| |||||||||| ||||||||||||||| Sbjct 541 AGAGTGAGCCAGAAGTGAGGTTAAACCAAGGGATTGTTCTATGTGATGATGGTGATTACA 600 Query 610 ACAACAACATTAAAACAGAGTATTTTGGGTTCGAGGAAGAGACTGATCATGAGCTGATGA 669 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 601 ACAACAACATTAAAACAGAGTATTTTGGGTTCGAGGAAGAGACTGATCATGAGCTCATGA 660 Query 670 ACATTGTGGAGAAAGCTGATGATAGTTGCTTGACATCTTCTGAGAATTGGGGAGGTTTCA 729 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 661 ACATTGTGGAGAAAGCTGATGATAGTTGCTTGACATCTTCTGAGAATTGGGGAGGTTTCA 720 Query 730 ATTCTGATTCTCTCTTAGACCAATCTAGCAGCAATTACCCTAACTGGTGGGAGTTTTGGT 789 ||||||||||||| |||||||||||||||||| |||||||||| |||||||||||||||| Sbjct 721 ATTCTGATTCTCTGTTAGACCAATCTAGCAGCCATTACCCTAATTGGTGGGAGTTTTGGT 780 Query 790 CATAAAAGCATATAAGaaaaaaaCAGAACATAAGCGAAGAGAAAGAGTGTGAATAGTTTG 849 ||||||| ||||||||||| ||||| |||||||| ||||||||||||||||||||||||| Sbjct 781 CATAAAAACATATAAGAAAGAAACAAAACATAAGTGAAGAGAAAGAGTGTGAATAGTTTG 840 Query 850 TAAATTATGTGTTAAGAAAAATAAATTT-AGTTTAGTTTAAATCTTGTTTCGATCTATGT 908 || ||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||| Sbjct 841 TAGATTATGTGTTAAGGAAAATAAATTTTAGTTTAGTTTAAATCTTGTTTCGATCTATGT 900 Query 909 ATCTACTATGTTCAATACTCTTTGTAGCTAATTAGTAGCTTATAATGAGACTAGAAAAGT 968 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 901 ATCTACTATGTTCAATACTCTTTGTAGCTAATTAGTAGCTTATGATGAGACTAGAAAAGT 960 Query 969 TTTGAAGTCACCAAGGTT 986 |||||||||| || |||| Sbjct 961 TTTGAAGTCATCATGGTT 978 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 36636123237 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5