BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G62030.2 Length=1181 Score E Sequences producing significant alignments: (Bits) Value Ahg486711 jgi|Araly1|486711|fgenesh2_kg.5__2703__AT3G62030.1 1467 0.0 Ahg939243 jgi|Araly1|939243|scaffold_503434.1 606 9e-173 Ahg939178 jgi|Araly1|939178|scaffold_503369.1 111 9e-24 > Ahg486711 jgi|Araly1|486711|fgenesh2_kg.5__2703__AT3G62030.1 Length=901 Score = 1467 bits (794), Expect = 0.0 Identities = 868/904 (96%), Gaps = 3/904 (0%) Strand=Plus/Plus Query 214 ATTGGGTTCGGTGTTAAGTCGCAATTAGTTTCTGCAAATCGAACAACTCAATCAGTTTGC 273 |||||||||| ||||||||||||||||||||| |||||||||||| |||||||||||||| Sbjct 1 ATTGGGTTCGTTGTTAAGTCGCAATTAGTTTCCGCAAATCGAACATCTCAATCAGTTTGC 60 Query 274 TTTGGAGCTCGTTCCTCTGGAATTGCATTATCTTCGAGATTGCACTATGCATCACCCATT 333 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 61 TTCGGAGCTCGTTCCTCTGGAATTGCATTATCTTCGAGATTGCACTATGCATCACCCATT 120 Query 334 AAGCAATTTTCTGGGGTTTATGCGACCACCAAGCATCAGAGAACCGCTTGTGTTAAATCC 393 ||||||||||| || ||| |||||||||||||||| |||||||| ||||||||||||||| Sbjct 121 AAGCAATTTTCCGGAGTTCATGCGACCACCAAGCACCAGAGAACTGCTTGTGTTAAATCC 180 Query 394 ATGGCTGCTGAGGAAGAAGAAGTAATCGAACCTCAAGCTAAAGTGACAAACAAGGTTTAC 453 ||||| ||||||||||| |||||||| ||||||||||||||||||||||||||||||||| Sbjct 181 ATGGCGGCTGAGGAAGAGGAAGTAATAGAACCTCAAGCTAAAGTGACAAACAAGGTTTAC 240 Query 454 TTTGATGTGGAAATTGGAGGTGAAGTTGCTGGCAGAATTGTGATGGGTCTCTTTGGAGAA 513 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 241 TTTGATGTGGAAATTGGAGGTGAAGTTGCTGGAAGAATTGTGATGGGTCTCTTTGGAGAA 300 Query 514 GTTGTGCCTAAAACCGTTGAAAACTTCCGTGCCTTGTGTACTGGTGAGAAGAAATACGGG 573 ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 301 ATTGTGCCTAAAACCGTTGAAAACTTCCGTGCCTTGTGTACTGGTGAGAAAAAATACGGG 360 Query 574 TACAAGGGTTCCTCTTTCCATCGTATTATTAAGGATTTCATGATCCAAGGAGGTGATTTC 633 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 361 TACAAGGGTTCCTCTTTCCATCGTATTATCAAGGATTTCATGATCCAAGGAGGTGATTTC 420 Query 634 ACCGAGGGAAATGGTACTGGAGGTATTAGTATTTACGGTGCCAAGTTCGAAGATGAAAAC 693 || |||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 421 ACTGAGGGAAATGGTACTGGAGGTATTAGTATTTACGGTGCCAAGTTTGAAGATGAAAAC 480 Query 694 TTCACCCTGAAGCATACTGGACCTGGAATCTTGAGCATGGCAAACGCTGGTCCTAATACT 753 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 481 TTCACCCTGAAGCATACTGGACCTGGAATCTTGAGCATGGCAAACGCTGGTCCTAATACT 540 Query 754 AATGGAAGCCAGTTTTTCATTTGTACCGTCAAGACTTCATGGTTAGATAACAAGCATGTC 813 ||||||||||||||||||||||| || ||||||||| |||||||||||||||||||||| Sbjct 541 AATGGAAGCCAGTTTTTCATTTGCACTGTCAAGACTCCATGGTTAGATAACAAGCATGTT 600 Query 814 GTGTTTGGACAAGTAATTGAAGGTATGAAGCTTGTTAGGACTCTTGAGTCTCAAGAGACT 873 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 601 GTGTTTGGACAAGTAATTGAAGGTATGAAGCTTGTTAGGACTCTTGAGTCTCAAGAGACA 660 Query 874 CGCGCTTTCGATGTTCCCAAGAAAGGTTGTAGAATCTATGCCTGCGGAGAGCTCCCGTTA 933 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 661 CGCGCTTTCGATGTTCCCAAGAAAGGTTGTAGAATCTATGCCTGCGGAGAGCTCCCGTTA 720 Query 934 GATGCTTGATAATCACTATTGACCGATGCATTGTCTTTGCCATCTTTGTTCTGTTTTTTG 993 || ||||||||||||| |||||||| ||||||||| |||| |||||||||||||||||| Sbjct 721 GAAGCTTGATAATCACCATTGACCGGTGCATTGTCATTGCGATCTTTGTTCTGTTTTTTA 780 Query 994 CTATTATGACTATTGAGGAATCCAAACCATCAAAAAGCCAAAGATTTTCAAATTCTGGTC 1053 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 781 CTATTATGACTATTGAGGAATCCAAACCATCAAAAAGCCAAAGATTTTCAAATTCTGGTC 840 Query 1054 TTTTATTTATTATATATTTCGGATACATGAGTTATAAGTTCTTTTAATCGATGTGGGATT 1113 |||| |||||| ||| || ||||||||||||||| ||||||||||||||||||||| ||| Sbjct 841 TTTTGTTTATT-TAT-TT-CGGATACATGAGTTAAAAGTTCTTTTAATCGATGTGGAATT 897 Query 1114 CTTA 1117 ||| Sbjct 898 GTTA 901 > Ahg939243 jgi|Araly1|939243|scaffold_503434.1 Length=1777 Score = 606 bits (328), Expect = 9e-173 Identities = 444/497 (89%), Gaps = 19/497 (4%) Strand=Plus/Plus Query 380 CTTGTGTTAAATCCATGGCT-GCTGAGGAAGAAGAAGTAATCGAACCTCAAGCTAAAGTG 438 ||||||||||||| |||| | || |||||||||||| || | || ||||||||||||||| Sbjct 1226 CTTGTGTTAAATCAATGG-TGGCGGAGGAAGAAGAAATACTAGAGCCTCAAGCTAAAGTG 1284 Query 439 ACAAACAAGGTTTACTTTGATGTGGAAATTGGAGGTGAAGTTGCTGGCAGAATTGTGATG 498 |||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 1285 ACAAGCAAGGTTTACTTTGATGTGGAAATTGGAGGTGAAGTTGCTGGAAGAATTGTGATG 1344 Query 499 GGTCTCTTTGGAGAAGTTGTGCCTAAAACCGTTGAAAACTTCCGTGCCTTGTGTACTGGT 558 |||||||||||||||||||||||||||||||||||||| || |||| ||||||||||||| Sbjct 1345 GGTCTCTTTGGAGAAGTTGTGCCTAAAACCGTTGAAAAATTTCGTGTCTTGTGTACTGGT 1404 Query 559 GAGAAGAAA-TACGGGTACAAGGGTTCCTCTTTCCATCGTATTATTAAGGATTTCATGAT 617 ||||| ||| || |||||||||||||| || ||||| ||||| || || | | Sbjct 1405 GAGAA-AAATTATGGGTACAAGGGTTCTTCCTTCCACCGTATCATCAA-G-------G-- 1453 Query 618 CCAAGGAGGTGATTTCACCGAGGGAAATGGTACTGGAGGTATTAGTATTTACGGTGCCAA 677 |||||||||||||||||||||||||||| ||||||||||| ||| | ||||||||||| Sbjct 1454 --AAGGAGGTGATTTCACCGAGGGAAATGGCACTGGAGGTATAAGTGTCTACGGTGCCAA 1511 Query 678 GTTCGAAGATGAAAACTTCACCCTGAAGCATACTGGACCTGGAATCTTGAGCATGGCAAA 737 || |||| |||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 1512 CTTTGAAGTTGAAAACTTCACCCTGAAGCATACTGGAGCTGGAATCTTGAGCATGGCAAA 1571 Query 738 CGCTGGTCCTAATACTAAT---GGAAGCCAGTTTTTCATTTGTACCGTCAAGACTTCATG 794 ||||||||||||||||||| ||||||||| |||||||||| |||||||||||| |||| Sbjct 1572 CGCTGGTCCTAATACTAATAATGGAAGCCAGATTTTCATTTGCACCGTCAAGACTCCATG 1631 Query 795 GTTAGATAACAAGCATGTCGTGTTTGGACAAGTAATTGAAGGTATGAAGCTTGTTAGGAC 854 |||||||||||||||||| |||||||||||||| |||||||||||||||||||| ||||| Sbjct 1632 GTTAGATAACAAGCATGTTGTGTTTGGACAAGTCATTGAAGGTATGAAGCTTGTGAGGAC 1691 Query 855 TCTTGAGTCTCAAGAGA 871 ||||| ||||| |||| Sbjct 1692 ACTTGAATCTCAGGAGA 1708 > Ahg939178 jgi|Araly1|939178|scaffold_503369.1 Length=1099 Score = 111 bits (60), Expect = 9e-24 Identities = 64/66 (97%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 561 GAAGAAATACGGGTACAAGGGTTCCTCTTTCCATCGTATTATTAAGGATTTCATGATCCA 620 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1022 GAAGAAATACGGATACAAGGGTTCCTCTTTCCATCGTATTATTAAGGATTTCATGATCCA 1081 Query 621 AGGAGG 626 | |||| Sbjct 1082 ATGAGG 1087 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 44070092052 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5