BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G62120.1 Length=1938 Score E Sequences producing significant alignments: (Bits) Value Ahg899203 jgi|Araly1|899203|Al_scaffold_0005_3169 2638 0.0 Ahg323549 jgi|Araly1|323549|fgenesh1_pm.C_scaffold_5001093 902 0.0 > Ahg899203 jgi|Araly1|899203|Al_scaffold_0005_3169 Length=1569 Score = 2638 bits (1428), Expect = 0.0 Identities = 1513/1555 (97%), Gaps = 2/1555 (0%) Strand=Plus/Plus Query 188 gaaaagaaagaaaaggttaagaaagaaaaggttgtgaaagaaaaggttgcaaaggCTTCT 247 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 16 GAAAAGAAAGAAAAGGTTAAGAAAGAAAAGGTTGTGAAAGAAAAGGTTGCAAAGGCTTCT 75 Query 248 TCGAGTGGACAGAAGAAGAAGGACGTCAAGAAGGAAACGGGTCTCGGACTCAGTGTTAAG 307 || ||||||||||||||||||||||||||||||||||||||||| |||||||| |||||| Sbjct 76 TCTAGTGGACAGAAGAAGAAGGACGTCAAGAAGGAAACGGGTCTTGGACTCAGCGTTAAG 135 Query 308 AAAGATGAGAACTTCGGGGAATGGTATTCTGAGGTTTGTAAACAAGATATGATTGAGTAC 367 ||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 136 AAAGATGAGAATTTCGGGGACTGGTATTCTGAGGTTTGTAAACAAGATATGATTGAGTAC 195 Query 368 TACGATATCTCTGGATGTTATATTC-TACGGCCATGGTCAATGGCCATTTGGGAGATTAT 426 || |||||||||||||||||||||| || |||||||||| |||||||||||||||||||| Sbjct 196 TATGATATCTCTGGATGTTATATTCTTA-GGCCATGGTCCATGGCCATTTGGGAGATTAT 254 Query 427 GCAAATTTTCTTTGATGCGGAAATCAAGAAAATGAAGGTCAAGAATTGCTATTTCCCTCT 486 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 255 GCAAATTTTCTTTGATGCGGAAATCAAGAAAATGAAGGTCAAGAATTGCTATTTCCCTCT 314 Query 487 GTTTGTATCTCCTGGTGTCTTAGAAAAGGAGAAGGACCACATCGAGGGATTCGCCCCTGA 546 |||||||||||||| ||||||||| ||||||||||||||||| |||||||||||||| || Sbjct 315 GTTTGTATCTCCTGCTGTCTTAGAGAAGGAGAAGGACCACATTGAGGGATTCGCCCCAGA 374 Query 547 GGTTGCGTGGGTTACAAAGTCAGGTAAATCTGACTTGGAAGTCCCAATTGCTATTCGTCC 606 |||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 375 GGTTGCTTGGGTTACAAAGTCAGGTAAATCTGACTTGGAAATCCCAATTGCTATTCGTCC 434 Query 607 AACCAGTGAGACAGTGATGTACCCTTACTACAGCAAGTGGATAAGGGGGCACCGTGACTT 666 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 435 AACCAGTGAGACTGTGATGTACCCTTACTACAGCAAGTGGATAAGGGGGCACCGTGACTT 494 Query 667 GCCTTTGAAGCTTAACCAGTGGTGCAATGTTGTTAGATGGGAGTTCAGCAACCCTACCCC 726 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 495 GCCTTTGAAACTTAACCAGTGGTGCAATGTTGTTAGATGGGAGTTCAGCAACCCTACCCC 554 Query 727 ATTTATCCGGAGCCGTGAGTTCCTTTGGCAGGAAGGTCACACTGCATTCGCCACAAAAGC 786 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 555 ATTTATCCGGAGCCGTGAGTTCCTTTGGCAGGAAGGTCACACTGCATTCGCCACGAAAGC 614 Query 787 AGAAGCAGATGAAGAGGTCCTTCAAATTTTGGAGCTTTACCGTCGCATATATGAAGAATA 846 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 615 AGAAGCAGATGAAGAGGTCCTTCAAATTTTGGAGCTTTACCGTCGCATATATGAAGAATA 674 Query 847 TCTTGCAGTTCCAGTTGTGAAAGGTATGAAGAGTGAAAATGAGAAGTTTGCTGGTGGACT 906 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 675 TCTTGCAGTTCCAGTTGTGAAAGGTATGAAGAGTGAAAATGAGAAGTTTGCTGGGGGACT 734 Query 907 TTACACTACAAGTGTAGAGGCTTTCATTCCAAACACTGGTCGTGGTGTACAAGGTGCAAC 966 ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 735 TTACACTACAAGTGTAGAGGCCTTCATTCCAAACACTGGTCGTGGTGTACAAGGTGCAAC 794 Query 967 CTCTCATTGTTTGGGACAAAACTTTGCGAAGATGTTTGAGATCAACTTTGAGAATGAGAA 1026 |||||| |||||||| ||||||||||||||||||||||||||||||| ||||||||| || Sbjct 795 CTCTCACTGTTTGGGTCAAAACTTTGCGAAGATGTTTGAGATCAACTATGAGAATGAAAA 854 Query 1027 AGCAGAGACAGAAATGGTGTGGCAGAATTCTTGGGCCTACAGTACCAGGACGATTGGAGT 1086 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 855 AGCAGAGACAGCAATGGTGTGGCAGAATTCTTGGGCCTACAGTACCAGGACGATTGGAGT 914 Query 1087 GATGATTATGACTCATGGAGATGACAAAGGCCTGGTACTCCCTCCTAAAGTCGCATCTGT 1146 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 915 GATGATTATGACTCATGGAGATGACAAAGGCCTGGTACTCCCTCCTAAAGTCGCATCTGT 974 Query 1147 GCAAGTTGTTGTGATTCCTGTTCCCTACAAAGATGCTAATACCCAAGGAATTTATGATGC 1206 ||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| Sbjct 975 GCAAGTTGTTGTGATCCCTGTACCCTACAAAGATGCTAATACCCAAGGAATTTATGATGC 1034 Query 1207 TTGTACTGCTACTGCATCTGCCTTGTGTGAAGCCGGTATCCGTGCTGAAGAAGATTTAAG 1266 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1035 TTGTACTGCTACTGCATCTGCCTTGTGTGAAGCCGGTATCCGTGCTGAAGAAGATTTAAG 1094 Query 1267 GGACAACTACTCTCCTGGATGGAAGTATTCAGACTGGGAAATGAAGGGTGTTCCATTGAG 1326 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1095 GGACAACTACTCTCCTGGATGGAAGTATTCAGACTGGGAAATGAAGGGTGTTCCATTGAG 1154 Query 1327 GATTGAGATTGGTCCCAGAGACCTAGAAAATGATCAGGTCAGAACTGTGAGACGTGACAA 1386 |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 1155 GATTGAGATTGGTCCCAGAGACCTGGAAAATGATCAGGTCAGAACTGTGAGACGTGACAA 1214 Query 1387 CGGAGTTAAGGAAGATATCCCAAGAGGTAGCTTAGTCGAACATGTTAAGGAACTGCTTGA 1446 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 1215 CGGAGTTAAGGAAGATATCCCAAGAGGTAGCTTAGTCGAAAATGTTAAGGAACTGCTTGA 1274 Query 1447 AAAGATCCAGCAAAACATGTATGAAGTTGCTAAGCAAAAGAGGGAAGCATGTGTTCAAGA 1506 ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 1275 GAAGATCCAGCAAAACATGTATGAAGTTGCGAAGCAAAAGAGGGAAGCATGTGTTCAAGA 1334 Query 1507 GGTAAAGACTTGGGATGAGTTTATCAAAGCTCTTAACGAAAAGAAACTCATTTTGGCTCC 1566 |||||||||||||||||||||||||||||| |||||||||||||||||||| || ||||| Sbjct 1335 GGTAAAGACTTGGGATGAGTTTATCAAAGCACTTAACGAAAAGAAACTCATCTTAGCTCC 1394 Query 1567 CTGGTGTGATGAAGAGGAAGTGGAAAGAGATGTTAAGGCACGTACGAAAGGTGAAACAGG 1626 ||||||||||||||||| |||||| |||||||| ||||||||||| ||||||||||| || Sbjct 1395 CTGGTGTGATGAAGAGGGAGTGGAGAGAGATGTGAAGGCACGTACTAAAGGTGAAACTGG 1454 Query 1627 AGCAGCTAAAACCCTTTGTTCTCCATTTGATCAGCCTGAACTCCCTGAAGGCACTCTCTG 1686 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 1455 AGCAGCTAAAACCCTTTGTTCTCCATTTGATCAGCCAGAACTCCCTGAAGGCACTCTCTG 1514 Query 1687 CTTTGCTTCAGGAAAACCTGCAAAGAAATGGACCTATTGGGGCAGGAGTTACTAA 1741 ||||||||||||||| ||||| ||||||||||||||||||||||||||||||||| Sbjct 1515 CTTTGCTTCAGGAAAGCCTGCCAAGAAATGGACCTATTGGGGCAGGAGTTACTAA 1569 > Ahg323549 jgi|Araly1|323549|fgenesh1_pm.C_scaffold_5001093 Length=1491 Score = 902 bits (488), Expect = 0.0 Identities = 614/674 (91%), Gaps = 11/674 (2%) Strand=Plus/Plus Query 703 ATGGGAGTTCAGCAACCCTACCCCATTTATCCGGAGCCGTGAGTTCCTTTGGCAGGAAGG 762 |||||||| || |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 393 ATGGGAGTGCAACAACCCTACCCCATTTATCCGGAGCCGTGAGTTCCTTTGGCAGGAAGG 452 Query 763 TCACACTGCATTCGCCACAAAAGCAGAAGCAGATGAAGAGGTCCTTCAAATTTTGGAGCT 822 |||| |||||||||||| ||||||||||||||||||||| |||| |||||||||||||| Sbjct 453 TCACTTTGCATTCGCCACGAAAGCAGAAGCAGATGAAGAGCTCCTCCAAATTTTGGAGCT 512 Query 823 TTACCGTCGCATATATGAAGAATATCTTGCAGTTCCAGTTGTGAAAGGTATG-AAGAGTG 881 || |||||||||||||||||||| ||||||||| ||||||||||| ||| || || |||| Sbjct 513 TTTCCGTCGCATATATGAAGAATTTCTTGCAGTCCCAGTTGTGAAGGGT-TGGAAAAGTG 571 Query 882 AAAATGAGAAGTTTGCTGGTGGACTTTACACTACAAGTGTAGAGGCTTTCATTCCAAACA 941 || ||||||| |||||||| |||||||||||||||||||||||| |||||||||||||| Sbjct 572 AACATGAGAAATTTGCTGGGGGACTTTACACTACAAGTGTAGAGATTTTCATTCCAAACA 631 Query 942 CTGGTCGTGGTGTACAAGGTGCAACCTCTCA-TTGTTTGGGACAAAACTTTGCGAAGATG 1000 ||||||||||||||||||| |||||||| || ||||||||| || |||||||| |||| | Sbjct 632 CTGGTCGTGGTGTACAAGGGGCAACCTC-CAATTGTTTGGGTCAGAACTTTGCAAAGACG 690 Query 1001 TTTGAGATCAACTTTGAGAATGAGAAAGCAGAGACAGAAATGGTGTGGCAGAATTCTTGG 1060 | ||||||||||| || | ||||||||| |||||||| || ||||||||||||||||||| Sbjct 691 TATGAGATCAACTATGTGGATGAGAAAGGAGAGACAGCAACGGTGTGGCAGAATTCTTGG 750 Query 1061 GCCTACAGTACCAGGACGATTGGAGTGATGATTATGACTC-ATGGAGATGACAAAGGCCT 1119 |||||||||||||||||||||||||||||||||||| || ||||||||||||| ||| | Sbjct 751 ACCTACAGTACCAGGACGATTGGAGTGATGATTATGA-TCCATGGAGATGACAAGGGCTT 809 Query 1120 GGTACTCCCTCCTAAAGTCGCATCTGTGCAAGTTGTTGTGATTC-CTGTTCCCTACAAAG 1178 | ||||||| |||||||||||| || ||||||||||||| || | |||| |||| |||| Sbjct 810 GATACTCCCCCCTAAAGTCGCACCTCTGCAAGTTGTTGTAAT-CGCTGTGCCCTGCAAAA 868 Query 1179 ATGCTAATACCCAAGGAATTTATGATGCTTGTACTGCTACTGCATCTGCCTTGTGTGAAG 1238 ||||||||| |||| ||||||||||||||||||||||||| | ||||||||||||||||| Sbjct 869 ATGCTAATATCCAAAGAATTTATGATGCTTGTACTGCTACAGTATCTGCCTTGTGTGAAG 928 Query 1239 CCGGTATCCGTGCTGAAGAAGATTTAAGGGAC-AACTACTCTCCTGGATGGAAGTATTCA 1297 ||||||||||||||||||||||||||||||| || ||| |||||||||||||||||||| Sbjct 929 CCGGTATCCGTGCTGAAGAAGATTTAAGGGATGAA-TACACTCCTGGATGGAAGTATTCA 987 Query 1298 GACTGGGAAATGAAGGGTGTTCCATTGAGGATTGAGATTGGTCCCAGAGACCTAGAAAAT 1357 ||||||||||||||||| ||||||||||||||||| ||||||||||||||||| |||||| Sbjct 988 GACTGGGAAATGAAGGGCGTTCCATTGAGGATTGAAATTGGTCCCAGAGACCTGGAAAAT 1047 Query 1358 GATCAGGTCA-GAA 1370 |||||||||| ||| Sbjct 1048 GATCAGGTCATGAA 1061 Score = 582 bits (315), Expect = 3e-165 Identities = 358/379 (94%), Gaps = 2/379 (1%) Strand=Plus/Plus Query 1364 GTCAGAACTGTGAGACGTGACAACGGAGTTAAGGAAGATATCCCAAGAGGTAGCTTAGTC 1423 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1114 GTCAGAACTGTGAGACGTGACAACGGAGTTAAGGAAGATATCCCAAGAGGTAGCTTAGTT 1173 Query 1424 GAACATGTTAAGGAACTGCTTGAAAAGATCCAGCAAAACATGTATGAAGTTGCTAAGCAA 1483 ||| ||||||||||||||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 1174 GAAAATGTTAAGGAACTGCTTGAGAAGATCCAGCAAAACATGTATGAAGTTGCGAAGCAA 1233 Query 1484 AAGAGGGAAGCATGTGTTCAAGAGGTAAAGACTTGGGATGAGTTTATCAAAGCTCTTAAC 1543 ||||||||||| ||||||||||||||||||||||||||||||||||||||| || ||||| Sbjct 1234 AAGAGGGAAGCGTGTGTTCAAGAGGTAAAGACTTGGGATGAGTTTATCAAATCTTTTAAC 1293 Query 1544 GAAAAGAAACTCATTTTGGCTCCCTGGTGTGATGAAGAGGAAGTGGAAAGAGATGTTA-A 1602 ||||||||| |||| || ||||||||||||||||||| ||||||||| |||||||| | | Sbjct 1294 GAAAAGAAATTCATCTTAGCTCCCTGGTGTGATGAAGTGGAAGTGGAGAGAGATGT-ACA 1352 Query 1603 GGCACGTACGAAAGGTGAAACAGGAGCAGCTAAAACCCTTTGTTCTCCATTTGATCAGCC 1662 ||||||||| ||||||||||| ||||||||||||||||||||||||||| | |||||||| Sbjct 1353 GGCACGTACTAAAGGTGAAACTGGAGCAGCTAAAACCCTTTGTTCTCCACTGGATCAGCC 1412 Query 1663 TGAACTCCCTGAAGGCACTCTCTGCTTTGCTTCAGGAAAACCTGCAAAGAAATGGACCTA 1722 |||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| Sbjct 1413 AGAACTCCCTGAAGGCACTCTCTGCTTTGCTTCAGGAAAGCCTGCCAAGAAATGGACCTA 1472 Query 1723 TTGGGGCAGGAGTTACTAA 1741 ||||||||||||||||||| Sbjct 1473 TTGGGGCAGGAGTTACTAA 1491 Score = 412 bits (223), Expect = 4e-114 Identities = 323/371 (87%), Gaps = 7/371 (2%) Strand=Plus/Plus Query 304 TAAGAAAGATGAGAACTTCGGGGAA-TGGTATTCTGAGGTTTGTAAACAAGATATGATTG 362 ||||||| ||||||| ||| | || ||||||| |||||||||||||| ||| ||||||| Sbjct 24 TAAGAAAAATGAGAATTTC-AGCAAGTGGTATTTTGAGGTTTGTAAACGAGACATGATTG 82 Query 363 AGTACTACGATATCTCTGGATGTTATATT-CTACGGCCATGGTCAATGGCCATTTGGGAG 421 |||||| | ||||||||||||||||| || ||| |||||| | | ||||||||||||||| Sbjct 83 AGTACTTCAATATCTCTGGATGTTATTTTCCTA-GGCCATTGACCATGGCCATTTGGGAG 141 Query 422 ATTATGCAAATTTTCTTTGATGCGGAAATCAAGAAAATGAAGGTC---AAGAATTGCTAT 478 || |||||||||||||||||||||||||| ||||||||||||||| |||||||| || Sbjct 142 ATAATGCAAATTTTCTTTGATGCGGAAATGAAGAAAATGAAGGTCGTAAAGAATTGGGAT 201 Query 479 TTCCCTCTGTTTGTATCTCCTGGTGTCTTAGAAAAGGAGAAGGACCACATCGAGGGATTC 538 ||||||||||||||| |||||||||||||||| ||||| || || || || || |||||| Sbjct 202 TTCCCTCTGTTTGTACCTCCTGGTGTCTTAGAGAAGGAAAATGAACATATTGAAGGATTC 261 Query 539 GCCCCTGAGGTTGCGTGGGTTACAAAGTCAGGTAAATCTGACTTGGAAGTCCCAATTGCT 598 || || ||||||| |||||||||||||||| |||||||||||||||||||||||||||| Sbjct 262 GCGCCAGAGGTTGGGTGGGTTACAAAGTCAATTAAATCTGACTTGGAAGTCCCAATTGCT 321 Query 599 ATTCGTCCAACCAGTGAGACAGTGATGTACCCTTACTACAGCAAGTGGATAAGGGGGCAC 658 | ||||||||| |||||||| || ||||| |||||| ||||||||| ||| |||| || Sbjct 322 ACTCGTCCAACTAGTGAGACTGTTTTGTACACTTACTTTAGCAAGTGGGTAAAGGGGTAC 381 Query 659 CGTGACTTGCC 669 ||||||||||| Sbjct 382 CGTGACTTGCC 392 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 72828548440 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5