BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G62240.1 Length=2701 Score E Sequences producing significant alignments: (Bits) Value Ahg939309 jgi|Araly1|939309|scaffold_503500.1 3864 0.0 Ahg322358 jgi|Araly1|322358|fgenesh1_pm.C_scaffold_4002415 222 9e-57 > Ahg939309 jgi|Araly1|939309|scaffold_503500.1 Length=2478 Score = 3864 bits (2092), Expect = 0.0 Identities = 2346/2470 (95%), Gaps = 11/2470 (0%) Strand=Plus/Plus Query 96 CAAATTCAGGAAGAGACATGGATGATAGCTGTGCCGTCTGCGCTGACAATCTCGAATGGG 155 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 4 CAAATTCAAGAAGAGACATGGATGATAGCTGTGCCGTCTGCGCTGACAATCTCGAATGGG 63 Query 156 TTGCCTATGGATCTTGTGGTCACCGAGAGGTTTGCTCCACATGCGTCGTTCGTCTCCGAT 215 ||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||| Sbjct 64 TTGCCTATGGATCTTGTGGTCACCGTGAGGTTTGCTCCACTTGCGTCGTTCGTCTCCGAT 123 Query 216 TCGTCCTCGACGATCCTCGCTGCTGTATCTGCAAGACCGAGTCTCCTATCGTTTTTGTCA 275 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 124 TCGTCCTCGACGATCCTCGCTGCTGTATTTGCAAGACCGAGTCTCCTATCGTTTTTGTCA 183 Query 276 CCAAGGCATTGGGTGATTATACAAGGACGATCAATGATTTCTCCACCTTCCCATCAGCAC 335 |||||||||||||||||||||| |||||||||| ||| |||||||||||||||||||||| Sbjct 184 CCAAGGCATTGGGTGATTATACGAGGACGATCACTGACTTCTCCACCTTCCCATCAGCAC 243 Query 336 CAAGGGAAGGTCGAGTAGGAGCTTTCTGGTATCATGAAGACACTCAGGCTTTCTTTGATG 395 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 244 CAAGGGAAGGGCGAGTAGGAGCTTTCTGGTATCATGAAGACACTCAGGCTTTCTTTGATG 303 Query 396 ACTTGGATCAGTACAGGATGATCAAAGCTATGTGTAGACTTTCTTGCGGTGTTTGTGATA 455 |||||||||| ||||||||||||||||||||||||||||| || |||||||||||||| | Sbjct 304 ACTTGGATCATTACAGGATGATCAAAGCTATGTGTAGACTCTCCTGCGGTGTTTGTGACA 363 Query 456 AGACGGAAGATAAACCTAGAGAAGGAGGACCAAGACATCATCGTCAGCGGATTAAGAGCG 515 || |||||||| ||||||||||||||||||||||||||||||| ||| |||||||||||| Sbjct 364 AGGCGGAAGATCAACCTAGAGAAGGAGGACCAAGACATCATCGGCAGAGGATTAAGAGCG 423 Query 516 TCGAACAGTTGAAGGGTCATTTATATCATAAGCACAAATTGCATATGTGTGGTTTATGTC 575 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 424 TTGAACAGTTGAAGGGTCATTTATATCATAAGCACAAATTGCATATGTGTGGTTTATGTC 483 Query 576 TAGAAGGGCGAAAGATATTCATATGTGAACAAAAGTTGTATACTAGGGCACAACTGAACC 635 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 484 TCGAAGGGCGAAAGATATTCATATGTGAACAAAAGTTGTATACTAGGGCACAACTGAACC 543 Query 636 AACACATACAGACTGGTGACTCTGAAGTTGATGGAAGTGAGAGTGAAAGGGGAGGCTTCG 695 |||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 544 AACACATACACACTGGTGACTCTGAAGTTGATGGAAGTGAGAGTGAAAGGGGTGGCTTCG 603 Query 696 CAGGACATCCTATGTGTGAATTCTGTAGGAATCCTTTCTATGGTGATAATGAATTGTATA 755 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 604 CTGGACATCCTATGTGTGAATTCTGTAGGAATCCTTTCTATGGTGATAATGAATTGTATA 663 Query 756 CTCACATGTCTACAGAGCATTACACCTGTCATCTATGCCAAAGGTCACAGCCAGGGCAAT 815 ||||||||||||||||||||||||| |||||| |||||||||||||||||||||| |||| Sbjct 664 CTCACATGTCTACAGAGCATTACACATGTCATTTATGCCAAAGGTCACAGCCAGGACAAT 723 Query 816 ATGAATATTACAAAAACTATGATGACTTAGAGATTCATTTCCGTAGAGACCATTTCCTCT 875 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 724 ATGAATATTACAAAAACTATGATGACTTGGAGATTCATTTCCGTAGAGACCATTTCCTCT 783 Query 876 GTGAAGACGACTCCTGCCTTGCTAAGAAGTTCACAGTTTTCCAGAATGAATCAGAGTTGA 935 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 784 GTGAAGACGACTCCTGCCTTGCTAAGAAGTTCACAGTTTTCCAGAATGAATCAGAGTTGA 843 Query 936 AAAGGCATAACGCTATTGAGCATGGAGGTAAAATGTCTCGGTCTCAGCGAAGTGCTGCAT 995 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 844 AAAGGCATAACGCTATTGAGCATGGAGGTAAAATGTCTCGGTCTCAGCGAAGTGCTGCAT 903 Query 996 TACAGATACCGACAAGTTTCCGATACAGTCGTGGAAATGATCAAGAGAATCGTCGAGGAA 1055 |||||||||| ||||||||||||||| | |||||||||||||||||||||||||| |||| Sbjct 904 TACAGATACCAACAAGTTTCCGATACCGACGTGGAAATGATCAAGAGAATCGTCGTGGAA 963 Query 1056 GACCCCGATCATTTCGTCGCGAGCCTGGTGATGAAGAATATAATCTTGCAGTTCATGCCG 1115 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| | Sbjct 964 GACCCCGATCATTTCGTCGCGAGCCTGGTGATGATGAATATAATCTTGCAGTTCATGCGG 1023 Query 1116 CTCTTCGTTTATCTGAGTCTGAGTATTCTCGGCAAGAGCCTGCTCCTCCACCCTCAAGTG 1175 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 1024 CTCTTCGTTTATCTGAGGCTGAGTATTCTCGGCAAGAGCCTGCTCCTCCACCCTCAAGTG 1083 Query 1176 CACCACCCGGATTCTCTGAAAACAACAACATACACGTGGATGATACTGATCCCCTTATTC 1235 ||||||| |||||||||||||||||||||||||||||||||||| |||||| ||| ||| Sbjct 1084 CACCACCTGGATTCTCTGAAAACAACAACATACACGTGGATGATGCTGATCTTCTTCTTC 1143 Query 1236 AGCCAATGGAATCTCTATCAACTACAGATATGGAACCCTCTTCACGGTATCTTCAAGCTG 1295 |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| | Sbjct 1144 AGCCAATGGAATCTCTATCAACTACAGATATGGAACCCTCTTCACGATATCTTCAAGCCG 1203 Query 1296 TAGGAAGCTTTGGTGGTGGTGGTTCACGTCTTGGAGAATCTGCTTTTCCTCCTCTTTCTG 1355 ||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 1204 TAGGAAGCTCTGGTGGTGGTGGTACACGTCTTGGAGAATCTGCTTTTCCTCCTCTTTCTG 1263 Query 1356 GGCAACAGAGTTCTGGACAGAACGTAGAGAGTTTACCAACTAACACCATGGCTGCTCGTC 1415 | |||| ||| |||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 1264 GTCAACCGAGATCTGGACAGAACGTAGAGAGTTTACCTACTAACACCATGGCTGCTCGTC 1323 Query 1416 TAAGACGCCAAACAAATCGAACTTCTACTGCTTCCGCTATTGCTAGTCCTTCTCAAGGAT 1475 ||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||| Sbjct 1324 TAAGACGCCAAACAAATCGAACTACTACTGCTTCTGCTATTGCTAGTCCTTCTCAAGGAT 1383 Query 1476 GGCCAGTGATTAATCGAGGCCCAG-GACAAGCATCTATTACAAGTGGAGGTAATCATTCT 1534 |||||||| |||| |||||||||| | ||||||||||| |||||||| |||||||||||| Sbjct 1384 GGCCAGTGGTTAACCGAGGCCCAGCG-CAAGCATCTATAACAAGTGGCGGTAATCATTCT 1442 Query 1535 TCTTCAGGATGGCCAGCTATAGGTCGAACGCCTGTACAAGCCTCTAGTTCTTCAGTCCAA 1594 ||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 1443 TCTTCGGGATGGCCAGCAATAGGTCGAACGCCTGTACAAGCCTCTAGTTCTTCAGTCCAA 1502 Query 1595 TCTAGGTCCCATAACAGAGTTTCACAACCTCGACCTCTGGCTTCTGCAGTTCCACAGGCT 1654 |||| |||||||| |||||| ||||| ||||||| |||||| || ||||| |||||||| Sbjct 1503 TCTATGTCCCATAGCAGAGTATCACAGGCTCGACCGCTGGCTCCTACAGTTTCACAGGCT 1562 Query 1655 GCTCGTAATGCAAATAGGATTCCTCACTCTTCCTCAGCCCCTAATCTATCTGATACAAGA 1714 ||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1563 GCTCGTAATGCGAACAGGATTCCTCACTCTTCCTCAGCCCCTAATCTATCTGATACAAGA 1622 Query 1715 TCACTTCAGCCTTCTCATTCAGATTTTCCTCCAGTTTCTTCTGCTGTTGTGCAAAATCGT 1774 |||| |||||||| ||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 1623 TCACATCAGCCTTTTCATTCAGAGTTTCCTCCAGTTTCTTCTGCTGTTGTGCAAAATCGT 1682 Query 1775 AAAACATCATCAACCACTACACAGGGATCGTCAAACACTCAACCCCCTCCAGATGTACAA 1834 || |||||||| ||||||||||| ||||| |||||||||||||||||||| ||||| ||| Sbjct 1683 AAGACATCATCCACCACTACACATGGATCATCAAACACTCAACCCCCTCCTGATGTTCAA 1742 Query 1835 TCTGCCAACAAGTCATTGATTGAGAAAATGCGATCTGCACTTGGTCATGATGAAGATGTA 1894 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1743 TCTGCCAACAAGTCATTGATTGAGAAAATGCGATCTGCACTTGGTCATGATGAAGATGTA 1802 Query 1895 TTCGTGGCCTTCAGGAATATATCAGGACAGTATCGTCAAGGTTCCATTGATGCAAAGACT 1954 || ||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 1803 TTTGTGGCATTCAGGAATATATCAGGACAGTATCGTCAAGGTTCGATTGATGCAAAGACT 1862 Query 1955 TATTTGGAGTATGTGCAAGGTTATGGATTGTCTCACTTGGTTATTGATCTTGCTAGACTG 2014 |||||||| |||||| |||| ||||||||||||||||||||||||||||||||||||||| Sbjct 1863 TATTTGGAATATGTGAAAGGATATGGATTGTCTCACTTGGTTATTGATCTTGCTAGACTG 1922 Query 2015 TGTCCTGACCCTAAGAGGCAGAAGGAACTCATTGATACCCATAATGCCAGTTTGAGAGAA 2074 |||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||| Sbjct 1923 TGTCCTGACCCTAAAAGGCAGAAGGAACTCATTGATACCCATAATACCAGTTTGAGAGAA 1982 Query 2075 GAGGATTCAAAGGATAATGGTCGGAG-TGCTGCGCAGAGCTCTTCTCAGCCTAAAGAGAG 2133 || ||||||||||| ||||||||| | |||||| |||||||||||||| |||||||| || Sbjct 1983 GAAGATTCAAAGGAGAATGGTCGG-GCTGCTGCCCAGAGCTCTTCTCAACCTAAAGATAG 2041 Query 2134 TCAAAGTTCAAAGAAAAACAAAGGAAAAGCTGTGAAAGTTGTTGACCCTAAAGAAACACT 2193 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| | Sbjct 2042 TCAAAGTTCAAAGAAAAACAAAGGAAAAGCTGTGAAAGTTGTTGACCCGAAAGAAACATT 2101 Query 2194 AGCAGATAACTTTATGGACACAGTAAGGAGATTACAATCTTCTCAGAATCCACAGGAAGA 2253 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 2102 AGCAGATAACTTTATGGACACAGTAAGGAGATTACAATCTTCTCAGAATCCCCAGGAAGA 2161 Query 2254 AGAAGAGGAGGCGATATCAAAGGATAAGAATACCTATAGATCAGACAAAGGCAAATCACA 2313 |||||||| | ||||| |||||||||||| | ||||| ||||||||||| |||||||| Sbjct 2162 AGAAGAGGTG---ATATCTAAGGATAAGAATTCTTATAGGTCAGACAAAGGTAAATCACA 2218 Query 2314 AGTAGTAGGAACGGATTCTTCTTCCACAGGAAGCAAACAGCAACGTAAGAAAACTTCTAA 2373 |||| |||||| ||||||||||| || |||| ||| ||||||||||||||||||||||| Sbjct 2219 AGTAACAGGAACTGATTCTTCTTCAACCGGAAACAAGCAGCAACGTAAGAAAACTTCTAA 2278 Query 2374 GTTTCACAGAGTACGGCTTGGAGATGGATCAATGGCTGCCTTGCTGGATCTTAACAATTC 2433 ||||||||||||||||||||| |||||||||||||||||||| || |||||||||||||| Sbjct 2279 GTTTCACAGAGTACGGCTTGGTGATGGATCAATGGCTGCCTTACTAGATCTTAACAATTC 2338 Query 2434 TA-CTCGCGAGTCTGAACAAGAATCTAAGGATAGTAATTCCAACAGTAACCAAAATCAGA 2492 || | || ||||||||||||||||| |||||| ||||||||||||||||||||||||||| Sbjct 2339 TAAC-CGTGAGTCTGAACAAGAATCAAAGGATGGTAATTCCAACAGTAACCAAAATCAGA 2397 Query 2493 CCGGTGGTTTACCGGTTCGTGGGGTTTGGCGTAAAGGAGGTGCTAACCTTTTCTCGTAAA 2552 ||||||||||||||||| | || |||||||||||||||||||| |||||||||||||| | Sbjct 2398 CCGGTGGTTTACCGGTTGGAGGCGTTTGGCGTAAAGGAGGTGCAAACCTTTTCTCGTAGA 2457 Query 2553 GAACT-AATt 2561 || || |||| Sbjct 2458 GA-CTTAATT 2466 > Ahg322358 jgi|Araly1|322358|fgenesh1_pm.C_scaffold_4002415 Length=2208 Score = 222 bits (120), Expect = 9e-57 Identities = 317/408 (78%), Gaps = 29/408 (7%) Strand=Plus/Plus Query 1678 TCACTCTTCCTCAGCCCCTAATCTATCTGATACAAGATCACT---TCAGCCTTCTCATTC 1734 |||||| || ||| ||||||| | ||||| ||||||||||| |||||||||||||| Sbjct 1401 TCACTCGTCTTCAACCCCTAAAATGTCTGAAACAAGATCACTGGAGCAGCCTTCTCATTC 1460 Query 1735 AGATTTTCCTCCAGTTTCTTCTGCTGTTGTGCAAAATCGTAAAACATCATCAACCACTAC 1794 |||| ||||||| |||| | || |||| ||||||| | ||||||| |||| | | Sbjct 1461 TGATTCTCCTCCAATTTC--C-GC---TGTGAAAAATCGCAGGTCATCATCCACCAGTGC 1514 Query 1795 -A---CAGGGATCGT-CAAACA-CTCAACCCCCTCCAGATGTACAATCTG-CCA-ACAAG 1846 | ||| || | | ||| | | ||| | | |||||||| |||| | | | ||| Sbjct 1515 AAGTGCAGCGAACATCCAAGTAGCACAAGGTGTTTCTGATGTACAGTCTGACAATAAAAG 1574 Query 1847 TCATTGATTGAGAAAATGCGAT--CTGCACTTGGTCATGATGAAGATG-TATTCGTGGCC 1903 | ||| |||| ||||| | || | || ||||| || |||||||| | ||||| ||||| Sbjct 1575 T--TTGGTTGAAAAAATAC-ATGCCAGC-CTTGGACACGATGAAGA-GTTATTCATGGCC 1629 Query 1904 TTCAGGAATATATCAGGACAGTATCGTCAAGGTTCCATTGATGCAAAG-ACTTATTTGGA 1962 |||| ||||| ||| ||| |||||||||| |||||||| ||||| ||| ||||| ||||| Sbjct 1630 TTCAAGAATACATCTGGAAAGTATCGTCATGGTTCCATCGATGC-AAGAACTTACTTGGA 1688 Query 1963 GTATGTGCAAGGTTATGGATTGTCTCACTTGGTTATTGATC-TTGCTAGACTGTGTCCTG 2021 |||||| |||||||||| ||||||||||| ||| | || | | |||||||| || |||| Sbjct 1689 ATATGTGAAAGGTTATGGTTTGTCTCACTTAGTTCTAGA-CATGGCTAGACTCTGCCCTG 1747 Query 2022 ACCCTAAGAGGCAGAAGGAACTCATTGATACCCATAATGCCAGTTTGA 2069 ||||| |||||||||||||||||||||||||||| |||||| | |||| Sbjct 1748 ACCCTCAGAGGCAGAAGGAACTCATTGATACCCACAATGCCTGCTTGA 1795 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 101891405375 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5