BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G62260.2 Length=1560 Score E Sequences producing significant alignments: (Bits) Value Ahg486731 jgi|Araly1|486731|fgenesh2_kg.5__2723__AT3G62260.2 2036 0.0 > Ahg486731 jgi|Araly1|486731|fgenesh2_kg.5__2723__AT3G62260.2 Length=1365 Score = 2036 bits (1102), Expect = 0.0 Identities = 1264/1342 (94%), Gaps = 12/1342 (1%) Strand=Plus/Plus Query 1 CGAGAGGAATAAATTCACACGCGAACTTCGATAGTTGTTAATTTTCGTTGAACACAAGTG 60 ||||||||||||| ||||||||||||||||||| |||| ||||||||||||||||||||| Sbjct 1 CGAGAGGAATAAAATCACACGCGAACTTCGATAATTGTCAATTTTCGTTGAACACAAGTG 60 Query 61 ACGAATTTGAGAGAGaaaaaaaaaGAAAATCAGAGATAAAGAATTTGAGTTTCTTGGAAT 120 ||||||||||||||| | || ||||||||||||||||||||||||||||| ||||| Sbjct 61 ACGAATTTGAGAGAG-----AGAA-AAAATCAGAGATAAAGAATTTGAGTTTCTGGGAAT 114 Query 121 TAAAGGATCGA--TT-TTGT--TG-AAGTGAAATTGAAATTGATTGTGAAAAGAGAAAGA 174 |||| |||||| || |||| || || |||||||||||||||||||||| ||||| ||| Sbjct 115 TAAAAGATCGATTTTGTTGTAGTGAAATTGAAATTGAAATTGATTGTGAAGAGAGAGAGA 174 Query 175 GACTGATGGTAGCAGAAGCAGAGGTTGTGTTTCAACAGAGTTTACCGGCGGTTCTGGAGA 234 ||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 175 GACAGATGGTAGCAGAAGCAGAGGTTGTGTTTCAACAGAGTTTGCCGGCGGTTCTGGAGA 234 Query 235 TTGAGTTGTTTGACGGAGTTTCCTCCGCCGTTAAATCTCCCGTTTCTTCTCCGAAATTGG 294 ||||||||||||| |||||||| ||||||||||||||||||||||||||||| ||||||| Sbjct 235 TTGAGTTGTTTGATGGAGTTTCTTCCGCCGTTAAATCTCCCGTTTCTTCTCCCAAATTGG 294 Query 295 GTTTTACTCAGTCAACGGCGTCGGTTTCCGGAAGTTTAACGACTTCTCCTGTGCAGGCTG 354 ||||| |||||||||||||||||||||| | |||||||||||||||||||||||||||| Sbjct 295 GTTTTTGTCAGTCAACGGCGTCGGTTTCCAGCAGTTTAACGACTTCTCCTGTGCAGGCTG 354 Query 355 ATATCTTTCCAGAGGGTGATTGCGATCCTAGTGTCTTGGATTATATTCCGACCATCCGGT 414 |||||||||||||||||||||||||||| ||||||| ||||||| ||||||||||||||| Sbjct 355 ATATCTTTCCAGAGGGTGATTGCGATCCCAGTGTCTCGGATTATGTTCCGACCATCCGGT 414 Query 415 CTGGAAGCTTTGCTGATATTGGGCCAAAGAGAAACATGGAAGATGAACACATTCGCATAG 474 |||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 415 CTGGAAGCTTCGCTGATATTGGTCCAAAGAGAAACATGGAAGATGAACACATTCGCATAG 474 Query 475 ACGATTTATCTTCTCAAGTTGGTTCCCTTTTTGAGTTGCCGAAGCCTAGTGCTTTCTATG 534 ||||| ||||||||||||||||||| || ||||||||||| ||||| ||||||||||||| Sbjct 475 ACGATCTATCTTCTCAAGTTGGTTCTCTCTTTGAGTTGCCAAAGCCAAGTGCTTTCTATG 534 Query 535 CGGTTTTTGACGGGCATGGAGGACCAGAAGCAGCAGCATACGTACGGGAAAATGCCATTA 594 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 535 CGGTTTTTGACGGGCATGGAGGACCAGAAGCAGCAGCATACGTACGGGAAAATGCCATTA 594 Query 595 GGTTTTTCTTTGAAGATGAGCAGTTTCCACAGACATCGGAAGTGAGTAGTGTTTATGTGG 654 ||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||| Sbjct 595 GGTTTTTCTTTGAAGATGAGCAGTTTCCACAAACATCGCAAGTGAGTAGTGTTTATGTGG 654 Query 655 AAGAAGTTGAGACTTCATTGAGAAATGCGTTTCTTCAAGCTGATCTAGCTTTGGCAGAGG 714 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 655 AAGAAGTTGAGACTTCATTGAGAAATGCGTTTCTTCAAGCTGATCTAGCTTTGGCAGAGG 714 Query 715 ATTGCAGTATCAGCGATTCTTGTGGTACCACCGCTCTGACTGCTCTTATTTGTGGAAGAC 774 |||||||||||||| ||||||||| ||||| ||||| |||||||||||||||||||| | Sbjct 715 ATTGCAGTATCAGCTCTTCTTGTGGAACCACTGCTCTTACTGCTCTTATTTGTGGAAGTC 774 Query 775 TCTTAATGGTTGCAAATGCCGGAGACTGCAGAGCGGTTCTATGCAGGAAAGGCAGAGCGA 834 |||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||| Sbjct 775 TCTTAATGGTTGCAAATGCCGGAGACTGCAGAGCGGTTTTATGCAGGAAAGGCAAAGCGA 834 Query 835 TAGACATGTCTGAAGACCATAAACCGATTAATCTACTTGAGAGAAGAAGAGTGGAGGAAT 894 ||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||| Sbjct 835 TAGACATGTCTGAAGACCATAAACCGATTAATCTACTCGAGAGAAGAAGAGTGGAAGAAT 894 Query 895 CCGGCGGTTTCATCACTAATGACGGTTACCTAAATGAAGTCCTAGCTGTAACCCGAGCTC 954 ||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||| Sbjct 895 CCGGCGGTTTCATCAATAATGACGGTTACCTAAATGAAGTCCTAGCTGTGACCCGAGCTC 954 Query 955 TGGGCGACTGGGATTTAAAACTGCCACACGGCTCTCAATCTCCACTGATCTCGGAACCAG 1014 | || ||||||||||||||||||||||| |||||||| ||||| || || |||||||||| Sbjct 955 TCGGTGACTGGGATTTAAAACTGCCACATGGCTCTCAGTCTCCGCTAATTTCGGAACCAG 1014 Query 1015 AAATCAAGCAGATAACTCTAACTGAAGACGATGAGTTTCTTGTGATTGGGTGCGATGGGA 1074 ||||||||||||||||| ||| ||||||||||||||| |||||||| || |||||||||| Sbjct 1015 AAATCAAGCAGATAACTTTAAGTGAAGACGATGAGTTCCTTGTGATCGGATGCGATGGGA 1074 Query 1075 TTTGGGATGTCTTGACGAGCCAAGAAGCGGTTAGCATTGTTAGGCGTGGCTTAAACCGGC 1134 |||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||| Sbjct 1075 TTTGGGATGTCTTGACGAGCCAAGAAGCAGTTAGCATTGTTAGACGTGGCTTAAACCGGC 1134 Query 1135 ACAACGATCCAACAAGATGTGCGCGAGAGCTAGTGATGGAGGCTCTGGGGCGGAACTCAT 1194 ||||||||||||||||||||||||||||||| ||||||||||||||| | |||||||||| Sbjct 1135 ACAACGATCCAACAAGATGTGCGCGAGAGCTTGTGATGGAGGCTCTGAGCCGGAACTCAT 1194 Query 1195 TTGATAATTTAACTGCGGTGGTGGTATGTTTCATGACAATGGACAGAGGGGACAAGCCGG 1254 ||||||||||||| |||||||||||||||||||||||| |||||||||| |||||||||| Sbjct 1195 TTGATAATTTAACCGCGGTGGTGGTATGTTTCATGACAGTGGACAGAGGAGACAAGCCGG 1254 Query 1255 TGGTGCCATTGGAGAAGAGAAGGTGTTTTAGTCTTTCGCCTGAAGCTTTCTGTAGCTTGA 1314 |||||||||||||||||||||| ||||||||||||||||| ||||||||||| ||||||| Sbjct 1255 TGGTGCCATTGGAGAAGAGAAGATGTTTTAGTCTTTCGCCAGAAGCTTTCTGCAGCTTGA 1314 Query 1315 GGAATCTGTTGGATGGCTGAAA 1336 |||| ||||||||||||||||| Sbjct 1315 GGAACCTGTTGGATGGCTGAAA 1336 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 58430435830 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5