BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G62290.1
Length=867
Score E
Sequences producing significant alignments: (Bits) Value
Ahg475701 jgi|Araly1|475701|fgenesh2_kg.2__831__AT3G62290.1 1075 0.0
Ahg486735 jgi|Araly1|486735|fgenesh2_kg.5__2727__AT3G62290.1 1070 0.0
Ahg483893 jgi|Araly1|483893|fgenesh2_kg.4__2953__AT2G47170.1 728 0.0
Ahg476172 jgi|Araly1|476172|fgenesh2_kg.2__1302__AT1G70490.1 536 9e-152
Ahg472612 jgi|Araly1|472612|fgenesh2_kg.1__2566__AT1G23490.1 516 1e-145
> Ahg475701 jgi|Araly1|475701|fgenesh2_kg.2__831__AT3G62290.1
Length=901
Score = 1075 bits (582), Expect = 0.0
Identities = 629/651 (97%), Gaps = 6/651 (1%)
Strand=Plus/Plus
Query 1 CTCCTCTCACGTTCGAAGACCATTTCTTGTTCTTTGGACGACCATCGGCGACAGTGTTAA 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 CTCCTCTCACGTTCGAAGACCATTTCTTGTTCTTTGGACGACCATCGGCGACAGTGTTAA 60
Query 61 GTCTAGAGTCTTCTTCTTCTTCGGCGTAGTTTTTTCCCCGGC-TTGAAAAATGGGTCTAT 119
|||||| | |||||||||||||||||||||||| ||| || |||||| ||||| || |
Sbjct 61 GTCTAG-G---TCTTCTTCTTCGGCGTAGTTTTTTTCCC-GCTTTGAAATATGGGGCTGT 115
Query 120 CCTTCGGAAAGTTGTTCAGCAAGCTCTTTGCAAAGAAAGAGATGCGTATCCTCATGGTGG 179
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 116 CCTTCGGAAAGTTGTTCAGCAGGCTCTTTGCAAAGAAAGAGATGCGTATCCTCATGGTGG 175
Query 180 GTCTCGATGCAGCTGGTAAGACTACGATCTTGTACAAGCTCAAGCTTGGAGAGATCGTGA 239
|||||||||| |||||||||||||||||| ||||||||||||||||||||||||| ||||
Sbjct 176 GTCTCGATGCTGCTGGTAAGACTACGATCCTGTACAAGCTCAAGCTTGGAGAGATTGTGA 235
Query 240 CTACGATTCCAACCATTGGTTTCAATGTGGAGACTGTGGAATACAAGAACATTAGCTTTA 299
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 236 CTACGATCCCAACCATTGGTTTCAATGTGGAGACTGTGGAATACAAGAACATTAGCTTTA 295
Query 300 CCGTGTGGGATGTCGGGGGTCAAGACAAGATTCGTCCATTGTGGAGGCACTACTTCCAGA 359
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 296 CTGTGTGGGATGTCGGGGGTCAAGACAAGATTCGTCCATTGTGGAGGCACTACTTCCAGA 355
Query 360 ACACTCAGGGACTTATCTTTGTGGTGGACAGCAATGATCGTGACCGTGTTGTGGAAGCCA 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 356 ACACTCAGGGACTTATCTTTGTGGTGGACAGCAATGATCGTGACCGTGTTGTGGAAGCCA 415
Query 420 GAGATGAGCTTCACAGAATGTTGAACGAAGATGAGTTGAGAGATGCTGTGCTTCTCGTTT 479
| |||||||||||||||||||||||||||||||||||||||||||||||||| || || |
Sbjct 416 GGGATGAGCTTCACAGAATGTTGAACGAAGATGAGTTGAGAGATGCTGTGCTCCTGGTCT 475
Query 480 TTGCTAACAAGCAAGATCTTCCAAATGCGATGAACGCCGCTGAGATAACCGATAAGCTTG 539
||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||
Sbjct 476 TTGCTAACAAGCAAGATCTTCCAAATGCGATGAACGCCGCTGAGATAACTGACAAGCTTG 535
Query 540 GACTTCACTCTCTCCGTCAACGACACTGGTACATACAGAGCACATGTGCTACCTCCGGAG 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 536 GACTTCACTCTCTCCGTCAACGACACTGGTACATACAGAGCACATGTGCTACCTCCGGAG 595
Query 600 AAGGGCTTTATGAGGGACTTGACTGGCTCTCTAACAACATCGCAAACAAGG 650
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 596 AAGGGCTTTATGAGGGACTTGACTGGCTCTCTAACAACATCGCAAACAAGG 646
Score = 255 bits (138), Expect = 3e-67
Identities = 201/229 (88%), Gaps = 14/229 (6%)
Strand=Plus/Plus
Query 648 AGGCTTAGGAGAACAACGTGTGGTTTGGTTTTTAATCGAGGAGAGTCTTGTCTTCTTCCT 707
|||||||||||| || ||||||||||| ||||||||||||||||||||||||||||| |
Sbjct 674 AGGCTTAGGAGAGCATTGTGTGGTTTGG-TTTTAATCGAGGAGAGTCTTGTCTTCTTCGT 732
Query 708 -TCTATCTTTTGTTCTTTCGTCTCAAACTC-TTATCATTTCATACTCTTTGTTCTTCGCT 765
||| |||||||||||||| |||||||||| ||||||||||||||||||||||||| |||
Sbjct 733 CTCTCTCTTTTGTTCTTTCTTCTCAAACTCTTTATCATTTCATACTCTTTGTTCTTTGCT 792
Query 766 CTAATAATTT-ACAAGttttttttt--ttGTTGCTTTTATCCTATAATTCAGACT--C-- 818
||||||| || || ||||||||||| || || |||||||||||||||||||| | |
Sbjct 793 CTAATAAATTCACGAGTTTTTTTTTCCTTTTTTCTTTTATCCTATAATTCAGAGTTTCAG 852
Query 819 ----TTATAAAATGGGGCCCAATTTCGGCGGATATTCCAAttttttttt 863
||||||||||||||||||||| ||||||||||||||||| |||||
Sbjct 853 ACGCTTATAAAATGGGGCCCAATTTAGGCGGATATTCCAATTTCTTTTT 901
> Ahg486735 jgi|Araly1|486735|fgenesh2_kg.5__2727__AT3G62290.1
Length=901
Score = 1070 bits (579), Expect = 0.0
Identities = 628/651 (96%), Gaps = 6/651 (1%)
Strand=Plus/Plus
Query 1 CTCCTCTCACGTTCGAAGACCATTTCTTGTTCTTTGGACGACCATCGGCGACAGTGTTAA 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 CTCCTCTCACGTTCGAAGACCATTTCTTGTTCTTTGGACGACCATCGGCGACAGTGTTAA 60
Query 61 GTCTAGAGTCTTCTTCTTCTTCGGCGTAGTTTTTTCCCCGGC-TTGAAAAATGGGTCTAT 119
|||||| | |||||||||||||||||||||||| ||| || |||||| ||||| || |
Sbjct 61 GTCTAG-G---TCTTCTTCTTCGGCGTAGTTTTTTTCCC-GCTTTGAAATATGGGGCTGT 115
Query 120 CCTTCGGAAAGTTGTTCAGCAAGCTCTTTGCAAAGAAAGAGATGCGTATCCTCATGGTGG 179
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 116 CCTTCGGAAAGTTGTTCAGCAGGCTCTTTGCAAAGAAAGAGATGCGTATCCTCATGGTGG 175
Query 180 GTCTCGATGCAGCTGGTAAGACTACGATCTTGTACAAGCTCAAGCTTGGAGAGATCGTGA 239
|||||||||| |||||||||||||||||| ||||||||||||||||||||||||| ||||
Sbjct 176 GTCTCGATGCTGCTGGTAAGACTACGATCCTGTACAAGCTCAAGCTTGGAGAGATTGTGA 235
Query 240 CTACGATTCCAACCATTGGTTTCAATGTGGAGACTGTGGAATACAAGAACATTAGCTTTA 299
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 236 CTACGATCCCAACCATTGGTTTCAATGTGGAGACTGTGGAATACAAGAACATTAGCTTTA 295
Query 300 CCGTGTGGGATGTCGGGGGTCAAGACAAGATTCGTCCATTGTGGAGGCACTACTTCCAGA 359
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 296 CTGTGTGGGATGTCGGGGGTCAAGACAAGATTCGTCCATTGTGGAGGCACTACTTCCAGA 355
Query 360 ACACTCAGGGACTTATCTTTGTGGTGGACAGCAATGATCGTGACCGTGTTGTGGAAGCCA 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 356 ACACTCAGGGACTTATCTTTGTGGTGGACAGCAATGATCGTGACCGTGTTGTGGAAGCCA 415
Query 420 GAGATGAGCTTCACAGAATGTTGAACGAAGATGAGTTGAGAGATGCTGTGCTTCTCGTTT 479
| |||||||||||||||||||||||||||||||||||||||||||||||||| || || |
Sbjct 416 GGGATGAGCTTCACAGAATGTTGAACGAAGATGAGTTGAGAGATGCTGTGCTCCTGGTCT 475
Query 480 TTGCTAACAAGCAAGATCTTCCAAATGCGATGAACGCCGCTGAGATAACCGATAAGCTTG 539
||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||
Sbjct 476 TTGCTAACAAGCAAGATCTTCCAAATGCGATGAACGCCGCTGAGATAACTGACAAGCTTG 535
Query 540 GACTTCACTCTCTCCGTCAACGACACTGGTACATACAGAGCACATGTGCTACCTCCGGAG 599
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 536 GACTTCACTCACTCCGTCAACGACACTGGTACATACAGAGCACATGTGCTACCTCCGGAG 595
Query 600 AAGGGCTTTATGAGGGACTTGACTGGCTCTCTAACAACATCGCAAACAAGG 650
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 596 AAGGGCTTTATGAGGGACTTGACTGGCTCTCTAACAACATCGCAAACAAGG 646
Score = 255 bits (138), Expect = 3e-67
Identities = 201/229 (88%), Gaps = 14/229 (6%)
Strand=Plus/Plus
Query 648 AGGCTTAGGAGAACAACGTGTGGTTTGGTTTTTAATCGAGGAGAGTCTTGTCTTCTTCCT 707
|||||||||||| || ||||||||||| ||||||||||||||||||||||||||||| |
Sbjct 674 AGGCTTAGGAGAGCATTGTGTGGTTTGG-TTTTAATCGAGGAGAGTCTTGTCTTCTTCGT 732
Query 708 -TCTATCTTTTGTTCTTTCGTCTCAAACTC-TTATCATTTCATACTCTTTGTTCTTCGCT 765
||| |||||||||||||| |||||||||| ||||||||||||||||||||||||| |||
Sbjct 733 CTCTCTCTTTTGTTCTTTCTTCTCAAACTCTTTATCATTTCATACTCTTTGTTCTTTGCT 792
Query 766 CTAATAATTT-ACAAGttttttttt--ttGTTGCTTTTATCCTATAATTCAGACT--C-- 818
||||||| || || ||||||||||| || || |||||||||||||||||||| | |
Sbjct 793 CTAATAAATTCACGAGTTTTTTTTTCCTTTTTTCTTTTATCCTATAATTCAGAGTTTCAG 852
Query 819 ----TTATAAAATGGGGCCCAATTTCGGCGGATATTCCAAttttttttt 863
||||||||||||||||||||| ||||||||||||||||| |||||
Sbjct 853 ACGCTTATAAAATGGGGCCCAATTTAGGCGGATATTCCAATTTCTTTTT 901
> Ahg483893 jgi|Araly1|483893|fgenesh2_kg.4__2953__AT2G47170.1
Length=922
Score = 728 bits (394), Expect = 0.0
Identities = 504/558 (90%), Gaps = 3/558 (1%)
Strand=Plus/Plus
Query 100 GGCTTG-AAAAAT-GGGTCTATCCTTCGGAAAGTTGTTCAGCAAGCTCTTTGCAAAGAAA 157
|||||| |||||| |||| | || ||||||||||||||||||||||||||||| ||||||
Sbjct 155 GGCTTGAAAAAATGGGGT-TGTCATTCGGAAAGTTGTTCAGCAAGCTCTTTGCGAAGAAA 213
Query 158 GAGATGCGTATCCTCATGGTGGGTCTCGATGCAGCTGGTAAGACTACGATCTTGTACAAG 217
||||||||||| || ||||| ||||||||||| ||||||||||| || ||| ||||||||
Sbjct 214 GAGATGCGTATTCTGATGGTTGGTCTCGATGCTGCTGGTAAGACGACTATCCTGTACAAG 273
Query 218 CTCAAGCTTGGAGAGATCGTGACTACGATTCCAACCATTGGTTTCAATGTGGAGACTGTG 277
||||| |||||||||||||| || || |||||||||||||| |||||||| ||||||||
Sbjct 274 CTCAAACTTGGAGAGATCGTCACCACTATTCCAACCATTGGGTTCAATGTTGAGACTGTT 333
Query 278 GAATACAAGAACATTAGCTTTACCGTGTGGGATGTCGGGGGTCAAGACAAGATTCGTCCA 337
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 334 GAATACAAGAACATTAGCTTTACCGTGTGGGATGTCGGGGGTCAAGACAAGATCCGTCCA 393
Query 338 TTGTGGAGGCACTACTTCCAGAACACTCAGGGACTTATCTTTGTGGTGGACAGCAATGAT 397
|||||||| || |||||||||||||| ||||||||||||||||| |||||||||||||||
Sbjct 394 TTGTGGAGACATTACTTCCAGAACACACAGGGACTTATCTTTGTTGTGGACAGCAATGAT 453
Query 398 CGTGACCGTGTTGTGGAAGCCAGAGATGAGCTTCACAGAATGTTGAACGAAGATGAGTTG 457
|||||||||||||| |||||||| || ||||||||||| ||| |||| || ||||| |||
Sbjct 454 CGTGACCGTGTTGTTGAAGCCAGGGACGAGCTTCACAGGATGCTGAATGAGGATGAATTG 513
Query 458 AGAGATGCTGTGCTTCTCGTTTTTGCTAACAAGCAAGATCTTCCAAATGCGATGAACGCC 517
|| ||||| || || || || ||||||||||| ||||||||||| || |||||||||||
Sbjct 514 AGGGATGCAGTTCTGCTTGTATTTGCTAACAAACAAGATCTTCCCAACGCGATGAACGCT 573
Query 518 GCTGAGATAACCGATAAGCTTGGACTTCACTCTCTCCGTCAACGACACTGGTACATACAG 577
||||||||||| || |||||||| ||||||||||| || ||||||||||||||||| |||
Sbjct 574 GCTGAGATAACTGACAAGCTTGGGCTTCACTCTCTTCGCCAACGACACTGGTACATTCAG 633
Query 578 AGCACATGTGCTACCTCCGGAGAAGGGCTTTATGAGGGACTTGACTGGCTCTCTAACAAC 637
||||||||||| ||||| ||||||||||| ||||||||||||||||||||||| ||||||
Sbjct 634 AGCACATGTGCCACCTCAGGAGAAGGGCTCTATGAGGGACTTGACTGGCTCTCCAACAAC 693
Query 638 ATCGCAAACAAGGCTTAG 655
|||||||||||||| |||
Sbjct 694 ATCGCAAACAAGGCATAG 711
> Ahg476172 jgi|Araly1|476172|fgenesh2_kg.2__1302__AT1G70490.1
Length=900
Score = 536 bits (290), Expect = 9e-152
Identities = 443/518 (86%), Gaps = 6/518 (1%)
Strand=Plus/Plus
Query 128 AAGTTGTTCAGCAAGCTCTTTGCAAAGAAAGAGATGCGTATCCTCATGGTGGGTCTCGAT 187
||| |||| |||| ||| ||||| ||||| |||||||| || || ||||| ||||| |||
Sbjct 131 AAGCTGTTTAGCAGGCTTTTTGCCAAGAAGGAGATGCGAATTCTGATGGTTGGTCTTGAT 190
Query 188 GCAGCTGGTAAGACTACGATCTTGTACAAGCTCAAGCTTGGAGAGATCGTGACTACGATT 247
|| ||||||||||| || || ||||||||||||||||| |||||||| || || || ||
Sbjct 191 GCTGCTGGTAAGACCACTATTTTGTACAAGCTCAAGCTCGGAGAGATTGTCACCACCATC 250
Query 248 CCAACCATTGGTTTCAATGTGGAGACTGTGGAATACAAGAACATTAGCTTT-ACCGTGTG 306
|| || ||||||||||||||||| |||||||||||||||||||| || ||| ||||||||
Sbjct 251 CCTACTATTGGTTTCAATGTGGAAACTGTGGAATACAAGAACATCAG-TTTCACCGTGTG 309
Query 307 GGATGTCGGGGGTCAAGACAAGATTCGTCCATTGTGGAGGCACTACTTCCAGAACACTCA 366
||||||||||||||| |||||||| ||||| |||||||| ||||||||||||||||||||
Sbjct 310 GGATGTCGGGGGTCAGGACAAGATCCGTCCCTTGTGGAGACACTACTTCCAGAACACTCA 369
Query 367 GGGACTTATCTTTGTGGTGGACAGCAATGATC-GTGACCGTGTTGTGGAAGCCAGAGATG 425
||| ||||||||||| ||||| ||||| || | | ||| | ||||| || || |||||||
Sbjct 370 GGGTCTTATCTTTGTCGTGGATAGCAACGA-CAGAGACAGAGTTGTTGAGGCTAGAGATG 428
Query 426 AGCTTCACAGAATGTTGAACGAAGATGAGTTGAGAGATGCTGTGCTT-CTCGTTTTTGCT 484
|||| ||||| ||| |||| || || ||| || | ||||||||| || || || |||||
Sbjct 429 AGCTCCACAGGATGCTGAATGAGGACGAGCTGCGTGATGCTGTG-TTGCTTGTGTTTGCC 487
Query 485 AACAAGCAAGATCTTCCAAATGCGATGAACGCCGCTGAGATAACCGATAAGCTTGGACTT 544
|||||||||||||||||||||||||||||||||||||| || || ||||||||||| |||
Sbjct 488 AACAAGCAAGATCTTCCAAATGCGATGAACGCCGCTGAAATCACAGATAAGCTTGGCCTT 547
Query 545 CACTCTCTCCGTCAACGACACTGGTACATACAGAGCACATGTGCTACCTCCGGAGAAGGG 604
|| || |||||||| || || |||||||| |||||||||||||| || || || ||||||
Sbjct 548 CATTCCCTCCGTCAGCGTCATTGGTACATCCAGAGCACATGTGCCACATCAGGTGAAGGG 607
Query 605 CTTTATGAGGGACTTGACTGGCTCTCTAACAACATCGC 642
|||||||| || || ||||||||||| |||||||||||
Sbjct 608 CTTTATGAAGGTCTGGACTGGCTCTCCAACAACATCGC 645
> Ahg472612 jgi|Araly1|472612|fgenesh2_kg.1__2566__AT1G23490.1
Length=931
Score = 516 bits (279), Expect = 1e-145
Identities = 461/550 (84%), Gaps = 8/550 (1%)
Strand=Plus/Plus
Query 110 ATGGGTCTATCCTTCGGAAAG-TTGTTCAGCAAGCTCTTTGCAAAGAAAGAGATGCGTAT 168
|||||| | || |||| ||| || || ||| ||| ||||| |||| |||||||| ||
Sbjct 88 ATGGGTTTGTCATTCGCCAAGCTT-TTTAGCCGGCTTTTTGCCAAGAGGGAGATGCGAAT 146
Query 169 CCTCATGGTGGGTCTCGATGCAGCTGGTAAGACTACGATCTTGTACAAGCTCAAGCTTGG 228
|||||||| ||||| ||||| ||||||||||| || || ||||||||||||||||| ||
Sbjct 147 TCTCATGGTTGGTCTTGATGCTGCTGGTAAGACCACCATTTTGTACAAGCTCAAGCTCGG 206
Query 229 AGAGATCGTGACTACGATTCCAACCATTGGTTTCAATGTGGAGACTGTGGAATACAAGAA 288
|||||| || || || ||||| || ||||| ||||||||||| |||||||| ||||||||
Sbjct 207 AGAGATTGTAACCACCATTCCTACTATTGGGTTCAATGTGGAAACTGTGGAGTACAAGAA 266
Query 289 CATTAGCTTT-ACCGTGTGGGATGTCGGGGGTCAAGACAAGATTCGTCCATTGTGGAGGC 347
||| || ||| || |||||||||||||||||||| |||||||| ||||| ||||||||||
Sbjct 267 CATCAG-TTTCACAGTGTGGGATGTCGGGGGTCAGGACAAGATCCGTCCCTTGTGGAGGC 325
Query 348 ACTACTTCCAGAACACTCAGGGACTTATCTTTGTGGTGGACAGCAATGATC-GTGACCGT 406
||||||||||||||||||| || |||||||||||||||||||||||||| | | ||||||
Sbjct 326 ACTACTTCCAGAACACTCAAGGTCTTATCTTTGTGGTGGACAGCAATGA-CAGAGACCGT 384
Query 407 GTTGTGGAAGCCAGAGATGAGCTT-CACAGAATGTTGAACGAAGATGAGTTGAGAGATGC 465
||||| || || |||||||| || ||| ||||| |||| || |||||| || | |||||
Sbjct 385 GTTGTTGAGGCTAGAGATGAA-TTGCACCGAATGCTGAATGAGGATGAGCTGCGTGATGC 443
Query 466 TGTGCTTCTCGTTTTTGCTAACAAGCAAGATCTTCCAAATGCGATGAACGCCGCTGAGAT 525
||| || ||||| |||||||||||||| ||||| |||||||| ||||| || ||||| ||
Sbjct 444 TGTTCTGCTCGTGTTTGCTAACAAGCAGGATCTCCCAAATGCTATGAATGCAGCTGAAAT 503
Query 526 AACCGATAAGCTTGGACTTCACTCTCTCCGTCAACGACACTGGTACATACAGAGCACATG 585
|| ||||||||||| || |||||||||||||| || ||||||||||| |||||||||||
Sbjct 504 CACTGATAAGCTTGGTCTCCACTCTCTCCGTCAGCGTCACTGGTACATCCAGAGCACATG 563
Query 586 TGCTACCTCCGGAGAAGGGCTTTATGAGGGACTTGACTGGCTCTCTAACAACATCGCAAA 645
||| || || || || |||||||| || || ||||||||| | || |||||||| ||
Sbjct 564 TGCCACTTCAGGTGAGGGGCTTTACGAAGGTCTTGACTGGTTGTCCAACAACATTGCCGG 623
Query 646 CAAGGCTTAG 655
|||||| |||
Sbjct 624 CAAGGCGTAG 633
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32099496114
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5