BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G62550.1 Length=798 Score E Sequences producing significant alignments: (Bits) Value Ahg486755 jgi|Araly1|486755|fgenesh2_kg.5__2747__AT3G62550.1 1133 0.0 > Ahg486755 jgi|Araly1|486755|fgenesh2_kg.5__2747__AT3G62550.1 Length=786 Score = 1133 bits (613), Expect = 0.0 Identities = 739/797 (93%), Gaps = 20/797 (3%) Strand=Plus/Plus Query 1 GTAAAAATTACACAAAG-GATAGTGTCTGCAAATATCTAAATGAAAACACTTAATTCCAA 59 ||||||||||| ||| |||| ||||| ||||||||||||| ||||||||||||||| | Sbjct 1 GTAAAAATTAC-TTAAGAGATAATGTCTACAAATATCTAAATAAAAACACTTAATTCC-A 58 Query 60 AAT-GAGAAATCAAGTGGGTTTTGCCTAGCTAATTGTATAAATAGTAACACAATCATAAT 118 ||| | |||||||||||||||||||||||||| |||||||||||| ||||||||| |||| Sbjct 59 AATAGGGAAATCAAGTGGGTTTTGCCTAGCTAGTTGTATAAATAGAAACACAATCGTAAT 118 Query 119 CTCTTCTTCCATCAG-GTCTTCTTCATAATATATTTCTTCTCTAATAATTGAAAGCAAAA 177 ||||||||||||| | | ||||||||||| |||||||||||||||||||||||||||||| Sbjct 119 CTCTTCTTCCATC-GAGCCTTCTTCATAAGATATTTCTTCTCTAATAATTGAAAGCAAAA 177 Query 178 GAAAACAGtttttttttttAGAAAGGTAAAGAAATGGAGGAAACAAAGGAGAGAAAGATA 237 |||| ||| | ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 178 GAAATCAG-TATTTTTTTTAGAAAGGTAAAGAAATGGAGGAAACAAAGGAGAGAAAGATA 236 Query 238 GTAGTAGCAGTAGACGAAAGCGAAGAGAGCATGGAAGCTCTGTCATGGAGTCTTGACAAT 297 ||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 237 GTAGTAGCAGTGGACGAAAGCGAAGAGAGCATGGAAGCTCTTTCATGGAGTCTTGACAAT 296 Query 298 CTTTTTCCATATGGTTCCAATAATACACTCATCCTCCTCTACGTCAAGCCCCCTCTTCCC 357 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 297 CTTTTTCCATATGGTTCCAATAATACACTCATCCTCCTCTACGTAAAGCCCCCTCTTCCC 356 Query 358 GTTTACTCTTCCCTCGATGCCGCAGGGTTTATAGTGACAGGAGACCCGGTTGCAGCTTTG 417 |||||||||||||| || |||||||||||||||||||| ||||||||||||||||||||| Sbjct 357 GTTTACTCTTCCCTTGACGCCGCAGGGTTTATAGTGACCGGAGACCCGGTTGCAGCTTTG 416 Query 418 AAGAAGTATGAATACGAGCTCGTGGAATCGGTCATGGCTCGGTCTCGAACCGTGTACCAA 477 |||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||| Sbjct 417 AAGAAGTATGAATACGAGCTGGTGGAATCGGTCATGGCTCGATCTCGAACCGTGTACCAA 476 Query 478 GATTATGAGTCTGATATTAATATAGAGAGACGAGTTGGAAGAGGAGATGCTAAGGAAGTT 537 |||||||| || |||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 477 GATTATGAATCCGATATTAATATAGAAAGACGAGTTGGAAGAGGAGATGCTAAGGAAGTT 536 Query 538 ATATGCAACGCAGTTCAGAAACTTAGAGTTGATATGTTAGTAATGGGCACTCATGACTAT 597 |||||||| |||||| |||||||||||| ||||||||||||||||||||||||||||||| Sbjct 537 ATATGCAAGGCAGTTGAGAAACTTAGAGCTGATATGTTAGTAATGGGCACTCATGACTAT 596 Query 598 GGCTTCTTCAAAAGGGCTTTGCTAGGGAGTGTGAGCGAGTATTGCGCCAAACGAGTCAAG 657 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 597 GGCTTCTTCAAAAGGGCTTTGCTAGGGAGTGTGAGCGAGTATTGCGCCAAACGAGTCAAG 656 Query 658 TGTCCTGTGGTTATCGTCAAGAAGCAAGCTCAAGATAATTAAGCTCATA--TGAT-TGCA 714 ||||||||| |||| |||||||||||| || ||||||||||| | ||| | | || | Sbjct 657 TGTCCTGTGATTATTGTCAAGAAGCAACCTGAAGATAATTAAA-T-ATAACTCTTGTG-A 713 Query 715 TTGTGTATATGTTTCGAAAGAACTGGTGTAACACTTGAATCAATCTTCGTAT---GCGAT 771 ||||||||||||||||||||||||| ||||||| || || | ||||||||| || || Sbjct 714 TTGTGTATATGTTTCGAAAGAACTGATGTAACATTT-AA--A-TCTTCGTATATTGCAAT 769 Query 772 AATAAAATACATAACGG 788 ||||||||||| ||||| Sbjct 770 AATAAAATACACAACGG 786 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 29469014841 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5