BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G62600.1 Length=1453 Score E Sequences producing significant alignments: (Bits) Value Ahg939346 jgi|Araly1|939346|scaffold_503537.1 1777 0.0 > Ahg939346 jgi|Araly1|939346|scaffold_503537.1 Length=1082 Score = 1777 bits (962), Expect = 0.0 Identities = 1042/1081 (96%), Gaps = 4/1081 (0%) Strand=Plus/Plus Query 149 TCC-GATTTCCGTTTCCATGGCGATTCGGTGGTCGGAGCTGTGTATCGTACTGTTCGCTC 207 ||| |||||||||||| ||||||||||||||||||||| ||||||||||| ||||||||| Sbjct 5 TCCTGATTTCCGTTTCTATGGCGATTCGGTGGTCGGAGTTGTGTATCGTATTGTTCGCTC 64 Query 208 TTTCCTACGCCATCTGCGTCCTTGCCGGGAAGAGTTACTACGATGTGTTGCAAGTCCCGA 267 |||| || ||||| ||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 65 TTTCTTATGCCATTTGCGTCCTTGCCGGGAAGAGTTACTACGATGTGTTGCAAGTTCCGA 124 Query 268 AAGGTGCATCTGATGAACAGATCAAGAGAGCTTATAGGAAACTAGCTTTGAAGTATCATC 327 ||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 125 AAGGTGCATCTGACGAACAGATCAAGAGAGCTTATAGGAAACTCGCTTTGAAGTATCATC 184 Query 328 CCGATAAGAATCAAGGAAATGAGGAAGCGACTCGCAAATTCGCTGAGATCAACAATGCTT 387 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 185 CGGATAAGAATCAAGGAAATGAGGAAGCGACTCGCAAATTCGCTGAGATCAACAATGCTT 244 Query 388 ATGAAGTGTTATCGGATGAGGAGAAGAGGGAGATATATAACAAGTATGGTGAAGAGGGAC 447 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 245 ATGAAGTGTTATCGGATGAGGAGAAGAGGGAGATATATAACAAGTATGGTGAAGAGGGAC 304 Query 448 TTAAACAGTTTTCTGCAAATggaggaagaggaggaggaggaggCGGCATGAATATGCAGG 507 |||||||||||||||||||||||||||||||||| ||||| || |||||||||||||||| Sbjct 305 TTAAACAGTTTTCTGCAAATGGAGGAAGAGGAGGTGGAGGCGGAGGCATGAATATGCAGG 364 Query 508 ACATCTTCAGCTCGTTTTTTGGTGGAGGTTCGATGGAGGAAGAAGAGAAGGTTGTCAAGG 567 |||| || ||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 365 ACATTTTTAGCTCGTTTTTCGGTGGAGGTTCGATGGAGGAAGAAGAGAAGGTTGTCAAGG 424 Query 568 GGGATGACGTAATTGTGGAACTTGAGGCAACTCTAGAAGATTTGTACATGGGAGGCTCTA 627 | |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 425 GTGATGACGTGATTGTGGAACTTGAGGCAACTCTAGAAGATTTGTACATGGGAGGCTCTA 484 Query 628 TGAAGGTATGGAGGGAAAAGAATGTGATAAAACCAGCTCCTGGAAAGAGAAAGTGTAACT 687 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 485 TGAAGGTATGGAGGGAAAAGAATGTGATAAAACCAGCTCCTGGAAAGAGAAAGTGTAACT 544 Query 688 GCAGGAACGAGGTCTATCACAGACAAATTGGTCCTGGAATGTTCCAACAGATGACAGAGC 747 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 545 GCAGGAACGAGGTCTACCACAGACAAATTGGTCCTGGAATGTTCCAACAGATGACAGAGC 604 Query 748 AGGTCTGTGACAAATGCCCTAATGTCAAATACGAACGGGAGGGATACTTTGTGACAGTTG 807 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 605 AGGTCTGTGACAAATGCCCTAATGTCAAATACGAACGGGAGGGATACTTTGTGACAGTTG 664 Query 808 ATATCGAGAAAGGAATGAAAGATGGAGAAGAAGTGTCTTTCTATGAAGACGGCGAACCCA 867 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 665 ATATCGAGAAAGGAATGAAAGATGGAGAAGAAGTGTCTTTCTATGAAGACGGTGAACCCA 724 Query 868 TTCTTGACGGTGACCCTGGTGACCTTAAGTTCCGAATCAGAACTGCACCACATGCCCGTT 927 |||| |||||||| ||||||||||||||||| |||||||||||||||||||| |||||| Sbjct 725 TTCTCGACGGTGAACCTGGTGACCTTAAGTTTCGAATCAGAACTGCACCACACACCCGTT 784 Query 928 TCAGAAGGGATGGCAACGATCTACACATGAACGTGAACATTACACTGGTTGAGGCGCTAG 987 || |||| |||||||||||||||||||||| ||| ||||| ||||||||||||||||||| Sbjct 785 TCCGAAGAGATGGCAACGATCTACACATGACCGTTAACATAACACTGGTTGAGGCGCTAG 844 Query 988 TTGGTTTTGAGAAATCATTCAAACACTTGGATGATCACGAAGTTGACATCAGTTCCAAGG 1047 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 845 TTGGTTTTGAGAAATCATTCAAACACTTAGATGATCACGAAGTTGACATCAGTTCCAAGG 904 Query 1048 GAATTACAAAGCCGAAGGAAGTAAAGAAGTTCAAAGGAGAAGGGATGCCACTTCACTACA 1107 |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 905 GAATTACAAAGCCGAAGGAAGTGAAGAAGTTCAAAGGAGAAGGGATGCCACTTCACTACA 964 Query 1108 GCACAAAGAAAGGCAACCTCTTTGTCACTTTTGAGGTTTTGTTTCCGTCTTCTCTCACTG 1167 ||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 965 GCACAAAGAAAGGGAACCTCTTTGTCACTTTTGAGGTTTTGTTTCCTTCTTCTCTCACTG 1024 Query 1168 ACGATCAGAAGAAGAAGATTAAAGAAGTCTTTGCTTAGTGctcttctctcgctttcgctc 1227 |||||||||||||||||||||||||||||||||||||||||||| ||||| |||| ||| Sbjct 1025 ACGATCAGAAGAAGAAGATTAAAGAAGTCTTTGCTTAGTGCTCT-CTCTC--TTTCTCTC 1081 Query 1228 t 1228 | Sbjct 1082 T 1082 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 54354779615 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5