BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G62650.2
Length=742
Score E
Sequences producing significant alignments: (Bits) Value
Ahg486762 jgi|Araly1|486762|fgenesh2_kg.5__2754__AT3G62650.1 998 0.0
> Ahg486762 jgi|Araly1|486762|fgenesh2_kg.5__2754__AT3G62650.1
Length=717
Score = 998 bits (540), Expect = 0.0
Identities = 632/675 (94%), Gaps = 11/675 (2%)
Strand=Plus/Plus
Query 74 CTATAGGGAGTGATGGAGATAACGCCGAAGAGGTACTGGAGGAGGTGGAGAGGATACGAG 133
|||| | |||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 46 CTATCGAGAGTGATGGAGATAACGCCGAAGAGGTACTGGCGGAGGTGGAGAGGATACGAG 105
Query 134 AAGCTTGATGGGTCATCGGAGACGACTTCGGGTCGAAGGAAAGGCAAAAGGGTCAAAATG 193
||||||||||||||||| ||||||| |||||||||||||||||| ||| || ||||||||
Sbjct 106 AAGCTTGATGGGTCATCAGAGACGAGTTCGGGTCGAAGGAAAGGTAAACGGATCAAAATG 165
Query 194 GATCCGACTCGCAAGAAACGTTTTTGGAGGATCAAGATTGTGCCGAAACTGAGGATCCTT 253
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 166 GATCCGACCCGCAAGAAACGTTTTTGGAGGATCAAGATTGTGCCGAAACTGAGGATCCTC 225
Query 254 AAAACGGCGTCGCCGAAGAAGTTCTTGGTGTGGCTACGTGATTCATATGTTAAGATGATG 313
||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 226 AAAACGGCGACGCCGAAGAAGTTTTTGGTGTGGCTACGTGATTCATATGTTAAGATGATG 285
Query 314 ATGCGGTTGGCTAACTCACGGGTTGTTGGATCTTCTGGATACGGTGGATCCGGATTCGGG 373
||||| ||||||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct 286 ATGCGTTTGGCTAACTCACGGGTAGTCGGATCTTCTGGATACGGTGGATCCGGATTCGGG 345
Query 374 TCAGGTCAGATGAAGGAGTACGATGAGAAAATGCTTGTGGAGATTTACAAGTCGATACTG 433
|| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 346 TCGGGTCAAATGAAGGAGTACGATGAGAAAATGCTTGTGGAGATTTACAAGTCGATACTG 405
Query 434 ATGGTGCAGGCGCAGGGGAATCTCGTGCACCGCGACACACCTAATAATAATCTTAAGCTT 493
|||| |||||||||||||||||||||||||||| | |||||||||||||||| |||||||
Sbjct 406 ATGGCGCAGGCGCAGGGGAATCTCGTGCACCGCCAAACACCTAATAATAATCATAAGCTT 465
Query 494 CCTTCAGAACCAGCGGTTGTCTCTGTCGTATCTTCTGTTGTTACTTGTTAGGTAATAAAG 553
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 466 CCTTCTGAACCAGCGGTTGTCTCTGTCGTATCTTCTGTTGTTACTTGTTAGGTAATAAAG 525
Query 554 AACAAACAATTATCCTTTCTT--CTTTACGATAAATTTCCAATGTTGAGAATCAAAATTG 611
|||||||||||||||||| || ||||| |||||||||||||||| |||||||||||||
Sbjct 526 AACAAACAATTATCCTTTTTTTTCTTTATAATAAATTTCCAATGTTAAGAATCAAAATTG 585
Query 612 TTGACTTGCTTGATACTATTTCGAGATTGATGATAGGCAAAGTTTGTGATTTTGATTTGT 671
|||||||| ||||||||||||||||||||||||| ||||||||| ||||||||||| |||
Sbjct 586 TTGACTTGTTTGATACTATTTCGAGATTGATGATTGGCAAAGTT-GTGATTTTGATCTGT 644
Query 672 ATCAAATTtatatatatataAAAAT-AGTACAAGAAAGAAAGAAA--G-A-AATAA-TAG 725
|||||||||||| | | | |||||| ||||||| ||||||||||| | | ||||| |||
Sbjct 645 ATCAAATTTATAAACA-A-AAAAATTAGTACAATAAAGAAAGAAATAGTACAATAAATAG 702
Query 726 ATGGTGGATTGTGGG 740
|||||||||||||||
Sbjct 703 ATGGTGGATTGTGGG 717
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 27334131489
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5