BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G62690.1 Length=1354 Score E Sequences producing significant alignments: (Bits) Value Ahg939357 jgi|Araly1|939357|scaffold_503548.1 1205 0.0 > Ahg939357 jgi|Araly1|939357|scaffold_503548.1 Length=819 Score = 1205 bits (652), Expect = 0.0 Identities = 761/815 (93%), Gaps = 2/815 (0%) Strand=Plus/Plus Query 79 TCTCTATCTATCTTCAAAACAATGGGAAACCTGTTTGACAGTAGCAAGACTTTATGGGGA 138 |||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||| Sbjct 5 TCTCTATCTATCTTCAAAACAATGGGAAACATGTTTGACAGTAGCAAGACGATATGGGGA 64 Query 139 AACATGAACCATGGATCGTCACGTTACTCTCTAAACGGCAAAATCATGCTTGCTTCCGTC 198 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 65 AACATGAACCATGGATCGTCACGTTACTCTCTCAACGGCAAAATCATGCTTGCTTCCGTC 124 Query 199 ATCATCCTCTTCGTCGCCGTCATTTTAATCCTCTGTTTCCACAGCTACGCTAGATGGTTA 258 |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 125 ATCATCCTCTTCGTCGCCGTCATTTTAATCCTCTGTTTCCACAGCTACGCCAGATGGTTG 184 Query 259 TTCCGCCGTCAAAACCGCCGTATTCGCCGCCGTATCAGTGCTCACCTCCGATCACTCGCC 318 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 185 TTCCGCCGTCAAAACCGCCGTATTCGCCGCCGTATCAGTGCTCACCTCCGATCACTTGCC 244 Query 319 GCCGCTAGAGACCCCACCCAATCATCATCCTCCCTCTCTCCTCTTGATCCGACGGTGCTC 378 |||||| |||||||||| ||||| || || || || |||||||||||||||||||||||| Sbjct 245 GCCGCTCGAGACCCCACTCAATCTTCCTCATCTCTATCTCCTCTTGATCCGACGGTGCTC 304 Query 379 GAGAAGATCCCTATCTTCGTCTACTCCGTTAAAACCCATGAATCTCCGCTTGAGGAATGC 438 ||||||||||| |||||||||||||||| |||||||||||||||||| || ||||| ||| Sbjct 305 GAGAAGATCCCGATCTTCGTCTACTCCGCTAAAACCCATGAATCTCCACTGGAGGAGTGC 364 Query 439 TCTGTTTGCTTGTCGGAATTCGAAGAAGACGACGAAGGACGTGTCCTTCCCAAATGCGGC 498 ||||||||||| ||||| || ||||||||||||||||||||||||||||||||||||||| Sbjct 365 TCTGTTTGCTTATCGGAGTTTGAAGAAGACGACGAAGGACGTGTCCTTCCCAAATGCGGC 424 Query 499 CACGTGTTCCATGTCGATTGTATAGACACGTGGTTCCGGTCCAGATCAAGTTGTCCTCTT 558 ||||||||||| || |||||||| |||||||||||||||||||||||||||||||||||| Sbjct 425 CACGTGTTCCACGTTGATTGTATCGACACGTGGTTCCGGTCCAGATCAAGTTGTCCTCTT 484 Query 559 TGTAGAGCTCCGGTTCAACCCGCACAGCCGGTTACCGAACCCGAACCGGTTGCTGCTGTG 618 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||| Sbjct 485 TGTAGAGCTCCGGTTCAACCCGCACAGCCGGTTACCGAATCCGAACCGGTTGCTGCCGTG 544 Query 619 TTTCCATCGGTTAAACCAATTGAGGATACCGAAGCCGGAAGTTCCTCTTCATCGGACGAA 678 || ||||||||||||||| |||| |||||||||||||||||||| || |||||||||||| Sbjct 545 TTCCCATCGGTTAAACCAGTTGAAGATACCGAAGCCGGAAGTTCTTCATCATCGGACGAA 604 Query 679 TCCGAATCCTCGACGCCGTCTTCCTCCTCTGGTTCGCCGGTGAGGTTTCCGATGGAAGCT 738 |||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||| Sbjct 605 TCCGAATCCTCGACGCCGTCTTCCTCCTCTGGGTCGCCGGTTAGGTTTCCGATGGAAGCT 664 Query 739 TGTGAGAGAGAACCGATTGATTTAGTCGGTATCATTGTGGAGATTCCCAGGGAATTTCAA 798 |||||||||| ||||||||||||| || ||| ||||||||||| ||||||| |||| || Sbjct 665 TGTGAGAGAGCACCGATTGATTTAATCCATATAATTGTGGAGATCCCCAGGGCATTTGAA 724 Query 799 GATTCTAATTCGGATCTACCCGCAGATAACGGGTCGAATCGTCGGGCTTCGTTGA-AAAG 857 ||||||||||||| |||||||| |||||||||||||||| ||| |||| || | |||| Sbjct 725 GATTCTAATTCGGGTCTACCCGGAGATAACGGGTCGAATAACCGGACTTCATT-ACAAAG 783 Query 858 GCTATGGATTATTTGATCACATAATTGGATAGTGA 892 |||||||| |||||||| ||| ||||||||||||| Sbjct 784 GCTATGGAGTATTTGATTACAAAATTGGATAGTGA 818 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 50665356693 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5