BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G62800.1
Length=1302
Score E
Sequences producing significant alignments: (Bits) Value
Ahg486783 jgi|Araly1|486783|fgenesh2_kg.5__2775__AT3G62800.2 1144 0.0
> Ahg486783 jgi|Araly1|486783|fgenesh2_kg.5__2775__AT3G62800.2
Length=1209
Score = 1144 bits (619), Expect = 0.0
Identities = 789/869 (91%), Gaps = 19/869 (2%)
Strand=Plus/Plus
Query 343 AAATTGCACAGAAAGAGAGTTCTCTGTTACCATTTTATGCAACTGCTACATCTGGTCCAT 402
||||||| |||||||||| |||| |||||||| |||||||||||||||| ||||||||||
Sbjct 294 AAATTGCTCAGAAAGAGAATTCTATGTTACCAGTTTATGCAACTGCTACTTCTGGTCCAT 353
Query 403 CGCATGCGCCTACTTTTACTTCAACTGTTGAGTTTGCTGGTAAAGTTTTCAGTGGAGAAG 462
||||| |||||||||||| ||| ||||||||||||||||| || ||||||| |||||||
Sbjct 354 CGCATTCGCCTACTTTTATTTCGACTGTTGAGTTTGCTGGGAAGGTTTTCACCGGAGAAG 413
Query 463 AGGCGAAAACCAAAAAGTTGGCTGAAATGAGCGCTGCTAAAGTTGCATTCATGAGTATCA 522
|||| |||||||||||||||||||||||||| ||||||||| |||||||||||||||| |
Sbjct 414 AGGCAAAAACCAAAAAGTTGGCTGAAATGAGTGCTGCTAAAATTGCATTCATGAGTATAA 473
Query 523 AAAATGGGAACTCGAACCAGACCGGATCGCCTACTTTGCCTAGTGAGAGACAAGAAGATG 582
||||||||||||||||||| ||| ||||||| ||||| || ||||||||||||||| ||
Sbjct 474 AAAATGGGAACTCGAACCAAACCTCATCGCCTTCTTTGTCTTGTGAGAGACAAGAAGCTG 533
Query 583 TAAATTCAAATGTGAAGAGCAGTCCACAAGAGATCCATTCTCAACCTTCTTCCAAGGTGG 642
||| |||||||||||||||||||| ||||||||||||||| ||| | ||||||||||||
Sbjct 534 TAAGTTCAAATGTGAAGAGCAGTCTACAAGAGATCCATTCCCAA-C--CTTCCAAGGTGG 590
Query 643 TGATGACCCCTGATACCCCATCAAAGGGGATTAAAGTGAATGAAGATGAATTTCCAGATC 702
|||||||||||||| ||||||||||| ||| |||||| ||||||||||| ||||||||
Sbjct 591 TGATGACCCCTGATGCCCCATCAAAGTTGATGAAAGTGTCTGAAGATGAATGTCCAGATC 650
Query 703 TTCATGA-TGCACCAGCCAGTAATGCTAAGGAGATTAACGTTGCTTTGAATGAGCCTGAG 761
||||| | |||||||||||||||||||||||| ||||||||||||||| ||| ||||||
Sbjct 651 TTCAT-AGTGCACCAGCCAGTAATGCTAAGGAAATTAACGTTGCTTTGCATGTGCCTGAA 709
Query 762 AATCCTACAAACGATGGTACTCTTAGTGCACTAACTACTGATGGTATGAAGATGAACATT 821
|||||| |||||||||||||||||| ||||| ||||||||||||||||||||||||||||
Sbjct 710 AATCCTGCAAACGATGGTACTCTTAATGCACCAACTACTGATGGTATGAAGATGAACATT 769
Query 822 GCTTCTTCTTCTT-TGCCTATACCTCACAATCCTACAAACGTTATTACTCTTAATGCACC 880
||| ||||||||| | ||||||||||| ||||||||||||||| |||||||||||||| |
Sbjct 770 GCTGCTTCTTCTTCT-CCTATACCTCAGAATCCTACAAACGTTGTTACTCTTAATGCATC 828
Query 881 AGCTGCCAATGGTATCAAGAGGAACATTGCTGCTTGTTCTTCGTGGATGCCTCAGAATCC 940
| || |||||||||||||||||||||||||||||||||||||| | ||||||||| ||||
Sbjct 829 ATCTACCAATGGTATCAAGAGGAACATTGCTGCTTGTTCTTCGCGTATGCCTCAGCATCC 888
Query 941 CACAAACGATGGTAGTGAAACATCATCATGTGTAGTAGATGAGAGTGAGAAAAAGAAGCT 1000
|||||||||||||||||||||||||||| ||| ||||||||||||||||| ||||||||
Sbjct 889 CACAAACGATGGTAGTGAAACATCATCA--TGT-GTAGATGAGAGTGAGAAGAAGAAGCT 945
Query 1001 CATAATGGGAACTGGCCACCTGAGTATACCAACTGGCCAACATGTAGTTTGTCGCCCATG 1060
|||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 946 CATAATGGGAACTGGCCACCTGAGTATACCAACTGGCCAACATGTAGTTTGTCGTCCGTG 1005
Query 1061 GAACCCCGAGATAACTCTTCCTCAAGACGCGGAGATGCTCTTTAGAGATGATAAATTTAT 1120
|||||| |||||||||||||||||||||||||||||||||||||| ||||||| ||||||
Sbjct 1006 GAACCCGGAGATAACTCTTCCTCAAGACGCGGAGATGCTCTTTAGGGATGATAGATTTAT 1065
Query 1121 AGCCTATCGTCTTGTGAAGCCATAACGACATCATCATCTTTGATGCATAATAAGTGTAGA 1180
||||||||||| | |||||||||| ||||||||| ||| ||||||||| | |||||||
Sbjct 1066 TGCCTATCGTCTCGGGAAGCCATAAAGACATCATC--CTT-GATGCATAA-A-GTGTAGA 1120
Query 1181 GATAGAATGTTAAGGTAAGCTATATCTCA 1209
|| | | | | ||| ||||||||||||||
Sbjct 1121 GA-ATA-T-T-AAGCTAAGCTATATCTCA 1145
Score = 353 bits (191), Expect = 1e-96
Identities = 248/274 (91%), Gaps = 10/274 (4%)
Strand=Plus/Plus
Query 39 CTCGA-AGTGTCTTCACCATTTCAAAGAGTTTAGATAGAGATGGATCATGTATACAAAGG 97
||||| |||||||||||||| | || || ||||| ||||||||||||||||||| ||
Sbjct 24 CTCGAGTGTGTCTTCACCATTAC-AA-AG---AGATAAAGATGGATCATGTATACAAGGG 78
Query 98 TCAACTGCAAGCGTATGCCCTGCAACATAATCTGGAGCTACCAGTGTATGCGAATGAGAG 157
|||| ||||||| ||||||||| ||||||||||||||||||| |||||||| |||||| |
Sbjct 79 TCAATTGCAAGCATATGCCCTGAAACATAATCTGGAGCTACCGGTGTATGCCAATGAGCG 138
Query 158 AGAAGGGCCTCCTCATGCTCCTAGATTTAGATGTAATGTTACATTCTGTGGACAGACTTT 217
|||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||
Sbjct 139 AGAAGGGCCTCCTCATGCTCCTCGATTTAGATGTAAGGTTACATTCTGTGGACAGACTTT 198
Query 218 CCAGAGCTCTG-AATTCTTTCCGACACTAAAATCGGCTGAACATGCCGCTGCAAAAATTG 276
||||||| ||| |||||||||||||||| ||||||||||||||||||||||| |||||||
Sbjct 199 CCAGAGC-CTGGAATTCTTTCCGACACTTAAATCGGCTGAACATGCCGCTGCGAAAATTG 257
Query 277 CAGTTG-CTTCTTTGACGCCACAAAGTCCAGAGG 309
|| ||| |||| ||||||||||| ||||||||||
Sbjct 258 CA-TTGGCTTCATTGACGCCACAGAGTCCAGAGG 290
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48682965009
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5