BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G62830.1
Length=1705
Score E
Sequences producing significant alignments: (Bits) Value
Ahg486786 jgi|Araly1|486786|fgenesh2_kg.5__2778__AT3G62830.2 2499 0.0
Ahg483948 jgi|Araly1|483948|fgenesh2_kg.4__3008__AT2G47650.1 1098 0.0
> Ahg486786 jgi|Araly1|486786|fgenesh2_kg.5__2778__AT3G62830.2
Length=1658
Score = 2499 bits (1353), Expect = 0.0
Identities = 1511/1586 (95%), Gaps = 16/1586 (1%)
Strand=Plus/Plus
Query 104 TTTTCTA-TCTTTCGATTCTAGATCTAGAATTCAATTTGTGAGGTTTGGAGATGGCGAGC 162
||||| | ||| ||| ||| || ||| ||||||||||| |||||||||||||||||||||
Sbjct 80 TTTTC-ACTCTCTCG-TTCAAGTTCTCGAATTCAATTT-TGAGGTTTGGAGATGGCGAGC 136
Query 163 GAGCTGATCAATCGGCGACACGAGACGGATCAACCAACCGCCGATGCTTATTACCCGAAA 222
|||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||
Sbjct 137 GAGCTGATCAATCGGCGACACGAGGCGGATCAACCAATCGCCGATGCTTATTACCCGAAA 196
Query 223 CCAATCAAACCATGGTTCACGGTGACTCGTCCGATGCGTTACATGCTCCGTGAACAGAGA 282
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 197 CCAATCAAACCATGGTTCATGGTGACTCGTCCGATGCGTTACATGCTCCGTGAACAGAGA 256
Query 283 CTTATCTTCGTTCTCGTTGGCATTGCAATCGCTACTTTGGTTTTCACAATTTTCCCTCGC 342
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 257 CTTATCTTCGTTCTCGTTGGCATTGCAATCGCTACTTTGGTTTTCACAATTTTCCCTCGC 316
Query 343 TCCACACAATCAACCCCTTACTCGGATCCTTTCTCCGGTTACGGAATCCGACCCGACGAA 402
||||| ||||||| | ||||||||||||| |||||||||||||||||| |||||||||||
Sbjct 317 TCCACCCAATCAAGCGCTTACTCGGATCCGTTCTCCGGTTACGGAATCAGACCCGACGAA 376
Query 403 TCGTACGTTCCGGCTATACAAGCTCAGAGGAAACCTAGCCTCGAGTACCTGAACCGGATC 462
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 377 TCGTACGTTCCGGCGATACAAGCTCAGAGGAAACCTAGCCTCGAGTACCTGAACCGGATC 436
Query 463 GGAGCAACAGGCGGGAAAATCCCACTGGGATTGAAACGCAAAGGGCTAAGAGTGGTTGTG 522
|||||||||||||||||||||||||| |||||||||||||||||||||||||| || ||
Sbjct 437 GGAGCAACAGGCGGGAAAATCCCACTCGGATTGAAACGCAAAGGGCTAAGAGTCGTCGTC 496
Query 523 ACCGGTGGTGCTGGATTCGTTGGATCGCATCTCGTGGATCGTTTGATGGCTAGAGGAGAT 582
|||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct 497 ACCGGTGGTGCTGGATTCGTTGGATCGCATCTTGTGGATCGTTTGATGGCGAGAGGAGAC 556
Query 583 ACTGTGATTGTTGTTGATAATTTCTTCACTGGAAGGAAAGAGAACGTTATGCACCATTTC 642
|||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 557 ACTGTGATCGTTGTTGACAATTTCTTCACTGGAAGGAAAGAGAACGTTATGCACCATTTC 616
Query 643 AGTAACCCTAACTTTGAGA-TGATCCGTCACGATGTGGTTGAGCCGATTCTTCTTGAGGT 701
||||||||||| ||||| | | |||||||||||||| |||||||||||||||||||||||
Sbjct 617 AGTAACCCTAATTTTGA-ACTTATCCGTCACGATGTTGTTGAGCCGATTCTTCTTGAGGT 675
Query 702 TGATCAGATCTACCATTTGGCTTGCCCTGCTTCTCCTGTTCATTACAAATTCAATCCCGT 761
|||||||||||| ||| ||||||||||||| |||||||||||||||||||||||||||||
Sbjct 676 TGATCAGATCTATCATCTGGCTTGCCCTGCCTCTCCTGTTCATTACAAATTCAATCCCGT 735
Query 762 CAAGACTATCAAGACGAATGTGGTTGGAACATTGAACATGCTTGGTTTGGCTAAGCGAGT 821
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 736 CAAGACTATCAAGACGAATGTGGTTGGAACACTGAACATGCTTGGTTTGGCTAAGCGAGT 795
Query 822 TGGGGCTAGATTTCTTCTGACGAGTACCAGTGAGGTTTATGGTGATCCTCTGCAGCATCC 881
|| |||||||||||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct 796 CGGTGCTAGATTTCTTCTGACGAGTACCAGTGAGGTCTATGGGGATCCTCTGCAGCATCC 855
Query 882 TCAGGTTGAGACTTACTGGGGCAACGTTAATCCCATTGGTGTTCGTAGTTGCTACGATGA 941
|||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 856 TCAGGTCGAGACTTACTGGGGCAACGTTAATCCAATTGGTGTTCGTAGTTGCTACGATGA 915
Query 942 AGGAAAACGTACGGCAGAGACGTTGACCATGGACTATCACCGAGGTGCCAATGTTGAGGT 1001
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 916 AGGAAAACGTACGGCAGAGACGTTGACCATGGACTATCACAGAGGTGCCAATGTTGAGGT 975
Query 1002 CAGAATTGCTAGGATCTTCAACACCTATGGTCCAAGAATGTGTATAGATGATGGGCGTGT 1061
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 976 CAGGATTGCTAGGATCTTCAACACCTATGGTCCAAGAATGTGTATAGATGATGGGCGTGT 1035
Query 1062 TGTTAGTAACTTCGTTGCACAGGCACTAAGGAAAGAGCCATTGACTGTTTACGGTGATGG 1121
||| || ||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1036 TGTCAGCAACTTCGTTGCACAGGCACTAAGGAAAGAACCATTGACTGTTTACGGTGATGG 1095
Query 1122 GAAGCAGACAAGGAGTTTCCAATTTGTTTCTGATCTGGTTGAAGGTTTGATGAGACTGAT 1181
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1096 GAAGCAGACAAGGAGTTTCCAATTTGTTTCTGATCTGGTTGAAGGTTTGATGAGATTGAT 1155
Query 1182 GGAAGGAGAACATGTCGGCCCATTCAACCTCGGTAACCCTGGTGAATTCACGATGCTCGA 1241
|||||||||||||||||| ||||| |||||||||||||||||||||||||| ||||||||
Sbjct 1156 GGAAGGAGAACATGTCGGGCCATTTAACCTCGGTAACCCTGGTGAATTCACAATGCTCGA 1215
Query 1242 GCTCGCTAAGGTGGTCCAAGAGACAATTGATCCGAATGCAAACATAGAGTTCAGACCAAA 1301
|||||||||||||||||||||||| ||||||| || |||||||||||||||||||||||
Sbjct 1216 GCTCGCTAAGGTGGTCCAAGAGACGATTGATCAAAACGCAAACATAGAGTTCAGACCAAA 1275
Query 1302 CACAGAAGACGACCCTCACAAGAGAAAGCCTGACATCACAAAGGCCAAAGAGCTTTTAGG 1361
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1276 CACAGAAGACGACCCTCACAAGAGAAAGCCTGACATCACAAAGGCCAAAGAGCTTTTAGG 1335
Query 1362 TTGGGAACCAAAGGTCTCTCTTCGTCAGGGACTGCCTCTCATGGTCAAAGATTTCCGTCA 1421
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1336 TTGGGAACCAAAGGTCTCTCTTCGTCAGGGACTGCCTCTCATGGTCAAAGATTTCCGTCA 1395
Query 1422 ACGTGTCTTTGGTGACCAGA-AGGAAGGCTCCTCCGCAGCTGCAACCACCACCAAGACAA 1480
|||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 1396 ACGTGTCTTTGGTGACCAGAGAG-AAGGCTCCTCCGCAGCTGCAACCACCACCAAGACAA 1454
Query 1481 CTTCAGCTTGAGCAAATGCAGAATCTGAGTAGCAGCCACTGCGGCTGGTAGTGGGTTTAT 1540
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||
Sbjct 1455 CTTCAGCTTGAGCAAATGCAGAATC-GAGTAGCAGCCACTGCGGCTGGTAGTGGGTTGAT 1513
Query 1541 AACAAAATTGCAAGAGCGTCGTTTC-TTTAAATTTATTTCGCTTTTGATTTCTGTTTTGA 1599
||||||| ||||||| | | | ||| ||| |||||||||| ||||||||||||||||||
Sbjct 1514 AACAAAAATGCAAGACCTT-GCTTCGTTTCTATTTATTTCGTTTTTGATTTCTGTTTTGA 1572
Query 1600 TAATCGTGTAAACGTAGAGTAAGAATTTGGTACCTTTACTTACTACTA-T-T-CATGGAC 1656
|||||||||||| |||||||||||||||||||||||||||||||||| | | |||| ||
Sbjct 1573 TAATCGTGTAAAATTAGAGTAAGAATTTGGTACCTTTACTTACTACTACTATTCATGAAC 1632
Query 1657 CTC--ACTACAGTTTTAAAAGAAAAA 1680
||| |||||||||||||||||||||
Sbjct 1633 CTCTCACTACAGTTTTAAAAGAAAAA 1658
> Ahg483948 jgi|Araly1|483948|fgenesh2_kg.4__3008__AT2G47650.1
Length=1466
Score = 1098 bits (594), Expect = 0.0
Identities = 881/1019 (86%), Gaps = 22/1019 (2%)
Strand=Plus/Plus
Query 439 AGCCTCGAGTACCTGAACCGGATCGGAGCAACAGGCGGGAAAATCCCACTGGGATTGAAA 498
||| |||||||| ||| |||||||||| | ||||||| |||||||| || || |||||
Sbjct 301 AGCATCGAGTACATGAGCCGGATCGGATCGGCAGGCGGCAAAATCCCTCTAGGCCTGAAA 360
Query 499 CGCAAAGGGCTAAGAGTGGTTGTGACCGGTGGTGCTGGATTCGTTGGATCGCATCTCGTG 558
|| |||| |||||| ||||||||||| ||||| || |||||||| || || || || |||
Sbjct 361 CGGAAAGTGCTAAGGGTGGTTGTGACAGGTGGAGCAGGATTCGTCGGGTCACACCTGGTG 420
Query 559 GATCGTTTGATGGCTAGAGGAGAT-ACTGTGATTGTTGTTGATAATTTCTTCACTGGAAG 617
|| || |||||||| ||||||||| || ||||| || || || ||||||||||| |||||
Sbjct 421 GACCGGTTGATGGCGAGAGGAGATAAC-GTGATCGTGGTCGACAATTTCTTCACCGGAAG 479
Query 618 GAAAGAGAACGTTATGCACCATTTCAGTAACCCTAACTTT-GAGATGATCCGTCACGATG 676
|||||||||||| |||||||| |||||||||||||| ||| || ||||||||||||||||
Sbjct 480 GAAAGAGAACGTGATGCACCACTTCAGTAACCCTAA-TTTCGAAATGATCCGTCACGATG 538
Query 677 TGGTTGAGCCGATTCTTCTTGAGGTTGATCAGATCTACCATTTGGCTTGCCCTGCTTCTC 736
| || |||||||| || || |||||||||||||||||||||||||| |||||||||||||
Sbjct 539 TAGTGGAGCCGATCCTCCTAGAGGTTGATCAGATCTACCATTTGGCATGCCCTGCTTCTC 598
Query 737 CTGTTCATTACAAATTCAATCCCGTCAAGACTATCA-A-----GACGAATGTGGTTGGAA 790
|||| || |||||||||||||||||||||||||||| | ||||||||||| ||||
Sbjct 599 CTGTCCACTACAAATTCAATCCCGTCAAGACTATCATATCCTTTACGAATGTGGTGGGAA 658
Query 791 CATTGAACATGCTT-GGTTTGGCTAAGCGAGTTGGG-GCTAGATTTCTT-CTGACGAGTA 847
| ||||||||| || || | || ||| ||| |||| || ||| ||||| ||||||||||
Sbjct 659 CCTTGAACATG-TTGGGGCTAGCGAAGAGAG-TGGGAGCAAGA-TTCTTGCTGACGAGTA 715
Query 848 CCAGTGAGGTTTATGGTGATCCTCTGCAGCATCCTCAGGTTGAGACTTACTGGGGCAACG 907
| |||||||| || || |||||||| || |||||||||||||||||||||||||||||||
Sbjct 716 CAAGTGAGGTCTACGGAGATCCTCTTCAACATCCTCAGGTTGAGACTTACTGGGGCAACG 775
Query 908 TTAATCCCATTGGTGTTCGTAGTTGCTACGATGAAGGAAAACGTACGGCAGAGACGTTGA 967
|||||||||| |||||||| ||||| ||||| ||||| ||||||||||| ||||| |||
Sbjct 776 TTAATCCCATCGGTGTTCGGAGTTGTTACGACGAAGGCAAACGTACGGCTGAGACTTTGG 835
Query 968 CCATGGACTATCACCGAGGTGCCAATGTTGAGGTCAGAATTGCTAGGATCTTCAACACCT 1027
||||||||||||| |||| || ||||||||||| || |||||| |||||||||| || |
Sbjct 836 CCATGGACTATCATAGAGGCGCTAATGTTGAGGTTAGGATTGCTCGGATCTTCAATACTT 895
Query 1028 ATGGTCCAAGAATGTGTATAGATGATGGGCGTGTTGTTAGTAACTTCGTTGCACAGGCAC 1087
|||| ||||| |||||||| ||||| || ||||| ||||| ||||||||||| ||||||
Sbjct 896 ATGGCCCAAGGATGTGTATCGATGACGGTCGTGTGGTTAGCAACTTCGTTGCCCAGGCAT 955
Query 1088 TAAGGAAAGAGCCATTGACTGTTTACGGTGATGGGAAGCAGACAAGGAGTTTCCAATTTG 1147
|||| |||||||| ||||||||||| |||||||| |||||||||||||||||||| ||||
Sbjct 956 TAAGAAAAGAGCCTTTGACTGTTTATGGTGATGGTAAGCAGACAAGGAGTTTCCAGTTTG 1015
Query 1148 TTTCTGATCTGGTTGAAGGTTTGATGAGACTGATGGAAGGAGAACATGTCGGCCCATTCA 1207
| ||||||||||| || ||| ||||||| ||||||| |||||||||||||| ||||| |
Sbjct 1016 TCTCTGATCTGGTGGAGGGTCTGATGAGGTTGATGGAGGGAGAACATGTCGGTCCATTTA 1075
Query 1208 ACCTCGGTAACCCTGGTGAATTCACGATGCTCGAGCTCGCTAAGGTGGTCCAAGAGACAA 1267
|||| |||||||| ||||||||||| ||||||||||||||||||||||| |||||||| |
Sbjct 1076 ACCTTGGTAACCCCGGTGAATTCACCATGCTCGAGCTCGCTAAGGTGGTTCAAGAGACGA 1135
Query 1268 TTGATCCGAATGCAAACATAGAGTTCAGACCAAACACAGAAGACGACCCTCACAAGAG-A 1326
|||| ||||| ||||| ||||||||||||||||||||||| |||||||| |||||||| |
Sbjct 1136 TTGACCCGAACGCAAAGATAGAGTTCAGACCAAACACAGAGGACGACCCACACAAGAGGA 1195
Query 1327 AAGCCTGACATCACAAAGGCCAAAGAGCTT-TTAGGTTGGGAACCAAAGGTCTCTCTTCG 1385
|| || |||||||||||||||||||||||| || ||||||||||||||||| |||| ||
Sbjct 1196 AA-CCAGACATCACAAAGGCCAAAGAGCTTCTT-GGTTGGGAACCAAAGGTGGCTCTACG 1253
Query 1386 TCA-GGGACTGCCTCTCATGGTCAAAGATTTCCGTCAACGTGTCTTTGGTGACCAGAAG 1443
|| ||| || || || |||||||||||||||||||||||||||||||| ||||| |||
Sbjct 1254 CCAAGGG-CTCCCACTTATGGTCAAAGATTTCCGTCAACGTGTCTTTGGCGACCAAAAG 1311
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63953521355
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5