BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G62910.1
Length=1417
Score E
Sequences producing significant alignments: (Bits) Value
Ahg939382 jgi|Araly1|939382|scaffold_503573.1 2235 0.0
> Ahg939382 jgi|Araly1|939382|scaffold_503573.1
Length=1296
Score = 2235 bits (1210), Expect = 0.0
Identities = 1250/1270 (98%), Gaps = 0/1270 (0%)
Strand=Plus/Plus
Query 24 CTCTCTAGAGTCTAGACAATGAATAGCTCGATGACGACGAGTCCAACGGCTCGAGCCTTC 83
||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 4 CTCTCTAGACTCTAGACAATGAATAGCTCGATGACTACGAGTCCAACGGCTCGAGCCTTC 63
Query 84 CTTCATCTTCACTCGTCACCATTCACTTTACGTTCGAGAAAGTCACCGTCTGGAGTTTGT 143
||||||||||||||||||||||||||||||||||| || || ||||| ||||||| |||
Sbjct 64 CTTCATCTTCACTCGTCACCATTCACTTTACGTTCTAGGCAGCCACCGGCTGGAGTATGT 123
Query 144 CTAGTCTCGTGGCCGCCTTCTCGGTCTCGCAGGACTCGACGACTCGTTTGTATGGCCGAA 203
|||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||
Sbjct 124 CTAGTCTCGTGGCCGCCTTCTCCGTCTCGCAGGACTCGACGACTCGTCTGTATGGCCGAA 183
Query 204 CCTTACCTCATTAGGAAAATGGAGTCTGTTGAGAAGACATGGAAGGAGTTATCGGTGAAA 263
||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||
Sbjct 184 CCTTACCTCATTAGGAAAATGGAGTCTGTGGAGAAGACATGGAAGGAGTTATCGGTAAAA 243
Query 264 CTAGCTGACCCAGATGTTGTTTCGAATCAATCTGAATACCAAAAACTGGCACAATCCATG 323
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 244 CTAGCTGACCCAGATGTTGTTTCGAATCAATCTGAATACCAAAAACTGGCACAATCCATG 303
Query 324 TCGGAGCTTGACGAGGTTGTAACAGTCTTCAGAAGATTCAAGGACTGTGAGAAGCAGTTA 383
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 304 TCGGAGCTTGACGAGGTTGTAACAGTCTTCAGAAGATTCAAGGACTGTGAGAAGCAGTTA 363
Query 384 CTAGAAAGCAAAGTTTTGGCGAAAGAGGCTGGAGATGATGAAGATATGGCTGAAATGATA 443
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 364 CTAGAAAGCAAAGTTTTGGCGAAAGAGGCTGGAGATGATGAAGATATGGCTGAAATGATA 423
Query 444 GGAAGTGAAATCAACTCGCTCACTAAAGAAATTGAGGAGCTTGAAAAACAACTTAAGGTG 503
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 424 GGAAGTGAAATCAACTCGCTCACTAAAGAAATTGAGGAGCTTGAAAAACAACTTAAGGTG 483
Query 504 TTACTTCTTCCTTCCGATCCTCTTGATGCCAGAAACATTTTGCTTGAAGTTAGAGCAGGA 563
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 484 TTACTTCTTCCTTCCGATCCTCTTGATGCCAGAAACATTTTGCTCGAAGTTAGAGCAGGA 543
Query 564 ACTGGTGGCGATGAAGCTGCAATTTGGACTGGTGACCTTGTGCGGATGTATCAGAGGTAC 623
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 544 ACTGGTGGCGATGAAGCTGCAATTTGGACTGGTGACCTTGTGCGGATGTATCAGAGGTAC 603
Query 624 AGCGAGCGCAGCTCTTGGAAGTTTTCAATGGTTTCATGCTCAGAGGCTGAACATGGAGGT 683
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 604 AGCGAGCGCAGCTCTTGGAAGTTTTCAATGGTTTCATGCTCAGAGGCTGAACATGGTGGT 663
Query 684 TACAAGACGTGTGTGATGGAGATTAAAGGAAATCGTGTCTATAGCAAGCTCAAGTATGAA 743
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 664 TACAAGACGTGTGTGATGGAGATTAAAGGAAATCGTGTCTATAGCAAGCTCAAGTACGAA 723
Query 744 TCTGGTGTTCATCGAGTCCAGCGTGTTCCTCAAACAGAAACACAGGGTCGTGTACACACT 803
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 724 TCTGGTGTTCATCGAGTCCAGCGTGTTCCTCAAACAGAAACACAGGGTCGTGTACACACT 783
Query 804 TCTACAGCAACTGTAGCCATCATGCCAGAGGCTGATGAAGTGGAAGTGGTGATTGACCCA 863
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 784 TCTACAGCAACTGTAGCCATCATGCCAGAGGCTGATGAAGTGGAAGTGGTGATTGACCCA 843
Query 864 AAGGACATTGAACTTACATCTGCAAGATCTGGCGGCGCTGGAGGCCAAAATGTGAACAAG 923
||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 844 AAGGATATTGAACTTACATCTGCAAGATCTGGCGGCGCTGGAGGGCAAAATGTGAACAAG 903
Query 924 GTGGAGACGGCTATAGATCTATTCCACAAACCGTCAGGTATTCGCATTTTCTGTACAGAA 983
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 904 GTGGAGACGGCTATAGATCTATTCCACAAACCGTCAGGTATTCGCATTTTCTGTACAGAA 963
Query 984 GAAAGGACCCAGATTAGGAATAAGGCGCGTGCTTTCCAGCTTCTGCGAGCAAAACTGTAT 1043
|||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 964 GAAAGGACTCAGATTAGGAATAAGGCTCGTGCTTTCCAGCTTCTGCGAGCAAAACTGTAT 1023
Query 1044 GAAATAAAAGTAAGGGAACAACAAGAGAAGATAAGGAATGAAAGGAAATCTCAGGTTGGG 1103
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1024 GAAATAAAAGTAAGGGAACAACAAGAGAAGATAAGGAATGAAAGGAAATCTCAGGTTGGG 1083
Query 1104 ACTGGAGCTCGTTCAGAAAAGATAAGAACATACAATTATAAGGACAGTAGAGTGACTGAT 1163
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1084 ACTGGAGCTCGTTCAGAAAAGATAAGAACATACAATTATAAGGACAGTAGAGTGACTGAT 1143
Query 1164 CATAGGCTAAAGATGAACTTTGCGCTTACAACATTTCTTGACGGTGCTTTAGAGGACGCA 1223
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1144 CATAGGCTAAAGATGAACTTTGCGCTTACATCATTTCTTGACGGTGCTTTAGAGGACGCA 1203
Query 1224 GTGCAGGCTTGTGCTGCTTTGGAGCAAAAGGAACTCATGGAAGAACTCTCCGAGTCTGTA 1283
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1204 GTGCAGGCTTGTGCTGCTTTGGAGCAAAAGGAACTCATGGAAGAACTCTCCGAGTCTGTA 1263
Query 1284 GCTGCTTCTT 1293
||||||||||
Sbjct 1264 GCTGCTTCTT 1273
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52983530795
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5