BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G63010.1
Length=1857
Score E
Sequences producing significant alignments: (Bits) Value
Ahg486805 jgi|Araly1|486805|fgenesh2_kg.5__2797__AT3G63010.1 2148 0.0
> Ahg486805 jgi|Araly1|486805|fgenesh2_kg.5__2797__AT3G63010.1
Length=1764
Score = 2148 bits (1163), Expect = 0.0
Identities = 1455/1587 (92%), Gaps = 55/1587 (3%)
Strand=Plus/Plus
Query 290 ACTATGGCTGGTGGTAACGAAGTCAACCTTAACGAATGCAAGAGAATTGTCCCACTCAAC 349
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 214 ACTATGGCTGGTGGAAACGAAGTCAACCTTAACGAATGCAAGAGAATTGTCCCACTCAAC 273
Query 350 ACATGGGTCCTCATTTCCAATTTCAAGCTTGCTTACAAAGTCCTCCGTCGCCCTGACGGT 409
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 274 ACATGGGTCCTCATTTCCAATTTCAAGCTTGCTTACAAAGTCCTCCGTCGTCCTGACGGT 333
Query 410 TCTTTCAACCGCGACCTCGCCGAGTTCCTTGACCGTAAAGTTCCCGCCAACTCTTTCCCC 469
|| ||||||||||||||||||||||| |||||||||||||||||||| ||| |||||||
Sbjct 334 TCCTTCAACCGCGACCTCGCCGAGTTTCTTGACCGTAAAGTTCCCGCTAACACTTTCCCT 393
Query 470 CTCGACGGCGTTTTCTCCTTCGACCACGTCGACTCAACAACTAACCTTCTCACCAGAATC 529
|||||||||||||||||||||| ||||||||||| | |||||||||||||||||||||
Sbjct 394 GTCGACGGCGTTTTCTCCTTCGATCACGTCGACTCTGCCACTAACCTTCTCACCAGAATC 453
Query 530 TACCAACCTGCGTCTCTCCTTCATCAGACCCGTCACGGAACCCTCGAGCTAACCAAACCT 589
||||||||||| ||||||||| | | |||||||| ||||||||||||||| |||||||||
Sbjct 454 TACCAACCTGCCTCTCTCCTTGACCTGACCCGTCTCGGAACCCTCGAGCTTACCAAACCT 513
Query 590 CTCAGTACTACAGAGATCGTCCCTGTTCTCATTTTCTTCCATGGAGGCAGCTTCACTCAT 649
||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 514 CTCAGCACTACAGAGATCGTCCCTGTTCTCATTTTCTTCCATGGAGGTAGCTTCACTCAT 573
Query 650 TCCTCCGCCAATAGTGCTATCTACGACACTTTCTGCCGACGCCTTGTCACCATTTGCGGT 709
||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 574 TCCTCGGCCAATAGTGCCATCTACGACACTTTCTGCCGACGCCTTGTCACCATTTGCGGT 633
Query 710 GTTGTTGTTGTCTCTGTTGATTACCGGAGATCCCCTGAGCATCGCTACCCTTGTGCTTAC 769
|||||||||||||||||||||||||||||||| ||||||||||| || ||||||||||||
Sbjct 634 GTTGTTGTTGTCTCTGTTGATTACCGGAGATCGCCTGAGCATCGGTATCCTTGTGCTTAC 693
Query 770 GACGATGGATGGAACGCTCTCAACTGGGTCAAGTCCAGAGTCTGGCTTCAGAGTGGTAAA 829
|||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 694 GACGATGGATGGAATGCTCTCAAATGGGTCAAGTCCAGAGTCTGGCTTCAGAGTGGTAAA 753
Query 830 GACTCCAATGTTTATGTTTATTTGGCTGGAGATAGCTCTGGAGGCAACATTGCTCACAAT 889
|||||||| ||||||||||||||||||||||||||||| ||||||||||| |||||||||
Sbjct 754 GACTCCAACGTTTATGTTTATTTGGCTGGAGATAGCTCAGGAGGCAACATAGCTCACAAT 813
Query 890 GTCGCTGTCAGAGCTACCAATGAAGGAGTCAAAGTGTTGGGGAACATTCTTCTTCATCCA 949
|| ||||| ||||| ||||| ||||||||||||||||||||||||||||||||||| |||
Sbjct 814 GTTGCTGTGAGAGCAACCAAAGAAGGAGTCAAAGTGTTGGGGAACATTCTTCTTCACCCA 873
Query 950 ATGTTTGGTGGACAGGAGAGGACTCAGTCTGAGAAGACCCTTGATGGCAAATACTTTGTG 1009
|||||||||||||| ||||||||| |||||||||||| ||||||||||||||||||||||
Sbjct 874 ATGTTTGGTGGACAAGAGAGGACTGAGTCTGAGAAGAGCCTTGATGGCAAATACTTTGTG 933
Query 1010 ACTATACAAGATCGAGATTGGTATTGGAGGGCTTATCTACCGGAAGGTGAAGATAGAGAT 1069
|||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||
Sbjct 934 ACTATACAAGATCGAGATTGGTATTGGAGGGCTTATTTACCTGAAGGTGAAGATAGAGAT 993
Query 1070 CATCCAGCATGTAATCCCTTTGGCCCGAGAGGTCAAAGCCTTAAAGGAGTCAACTTTCCA 1129
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 994 CATCCAGCATGTAATCCCTTTGGCCCGAGAGGTCAAAGCCTTAAAGGTGTCAACTTTCCC 1053
Query 1130 AAGAGTCTTGTTGTTGTCGCTGGTTTAGATCTTGTTCAAGATTGGCAATTAGCCTATGTG 1189
||||||||||||||||| |||||||||||||||||||| ||||||||||| || || |||
Sbjct 1054 AAGAGTCTTGTTGTTGTGGCTGGTTTAGATCTTGTTCAGGATTGGCAATTTGCTTACGTG 1113
Query 1190 GATGGGCTTAAGAAGACTGGTCTTGAAGTCAATCTTTTGTATTTGAAACAAGCTACCATT 1249
||||| |||||||||| |||||||||||| |||||||||||||||||||||||||||||
Sbjct 1114 GATGGCCTTAAGAAGAATGGTCTTGAAGTGAATCTTTTGTATTTGAAACAAGCTACCATC 1173
Query 1250 GGCTTTTACTTCTTGCCTAACAATGATCACTTTCATTGTCTTATGGAAGAGTTGAATAAG 1309
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1174 GGGTTTTACTTCTTGCCTAACAATGATCACTTTCATTGTCTTATGGAAGAGTTGAAAAAG 1233
Query 1310 TTTGTGCACTCCATAGAGGATTCTCAAAGCAAGTCAAGTCCTGTGCTTCTTACTCCTTAG 1369
||||||||| |||||||||||||||||||||||||||||||| ||||||||||||| |||
Sbjct 1234 TTTGTGCACCCCATAGAGGATTCTCAAAGCAAGTCAAGTCCTTTGCTTCTTACTCCGTAG 1293
Query 1370 ---CAACGACAAT--G-TCTGGTCATGTTGCTGATATATACCACATGAAGAGTAGAAGAA 1423
|||| |||| | ||| |||||||||||||||||||| | | || || |||||||
Sbjct 1294 GAACAACAACAACAAGGTCTAGTCATGTTGCTGATATATAC-A--T-AA-AG-AGAAGAA 1347
Query 1424 GAAGACTAGAGGATCGGTTTGTTTTGCCTAT----CTATGATTGGGTTGT-GTACAGTTT 1478
||| | ||||||||||||||||||||||| ||||||| ||||| | |||||||||
Sbjct 1348 GAA-A---GAGGATCGGTTTGTTTTGCCTATATATCTATGAT-GGGTTTTTGTACAGTTT 1402
Query 1479 CCACAAGTGGTGTCTAGTGTTCAATAGCGTTTCTTTTGTGTTCCTTGGTCTCCGGAAGCA 1538
||||||||| ||||||||||| | ||||||||||||||||||||||||||||||||||||
Sbjct 1403 CCACAAGTGTTGTCTAGTGTTTAGTAGCGTTTCTTTTGTGTTCCTTGGTCTCCGGAAGCA 1462
Query 1539 TAATAAGTCTGTCTTTCTGTGAGGTCTTGGTTGCGCCTGGCGAGAGACCACTTCGGTTAT 1598
||||| | | || | | |||||| ||||||| ||||||| ||||
Sbjct 1463 TAATA--T--G-------GT----T---G----CGCCTGACGAGAGATCACTTCGCTTAT 1500
Query 1599 CGGCATCTATCGTTTTAGGGCTATACCGGGGA-ATGGTACTTTGTTTGCGTACTAGTATG 1657
|||||||||||| ||||||||||||||||| | || ||||||||||||||||||||||||
Sbjct 1501 CGGCATCTATCGGTTTAGGGCTATACCGGG-ACATTGTACTTTGTTTGCGTACTAGTATG 1559
Query 1658 GGTAGGCTTTAGTTGGTTCTAGCTTAGAGTACAGAGGGTAAATTACAAGACAACTAACTT 1717
||||| ||||| || | | ||||| |||||||||||||||||||||||||||||||||||
Sbjct 1560 GGTAGACTTTAATTAGCTGTAGCT-AGAGTACAGAGGGTAAATTACAAGACAACTAACTT 1618
Query 1718 GTCTTCAACATGTTGTGaaaaaaaCTAATCCTTGGTGAGGATTTGTATGTTTATATTAAC 1777
|||||||||||||||||||||||||| |||||||||| ||||||||||||| ||||||||
Sbjct 1619 GTCTTCAACATGTTGTGAAAAAAACTTATCCTTGGTGTGGATTTGTATGTTGATATTAAC 1678
Query 1778 TTTTGCTTTCTCATGCTATTAATAGA----GTATGTCTTTGTGGTTGTAGTTTCTCAC-T 1832
||| |||||||||||||||||||||| |||||||||||||||||||||||| ||| |
Sbjct 1679 TTT-GCTTTCTCATGCTATTAATAGAAATAGTATGTCTTTGTGGTTGTAGTTTCCCACCT 1737
Query 1833 TC--CTTCTTGTTTTAGTTCATGCATT 1857
|| |||||||||||||||||||||||
Sbjct 1738 TCTTCTTCTTGTTTTAGTTCATGCATT 1764
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 69743238595
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5