BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G63030.1 Length=784 Score E Sequences producing significant alignments: (Bits) Value Ahg939394 jgi|Araly1|939394|scaffold_503585.1 717 0.0 > Ahg939394 jgi|Araly1|939394|scaffold_503585.1 Length=589 Score = 717 bits (388), Expect = 0.0 Identities = 517/578 (89%), Gaps = 14/578 (2%) Strand=Plus/Plus Query 45 AAGTGAGATGAAGGAAGAGGAGGAGATCGGAAAACCAGCGAAACCAAAAGCCAAGAAAGA 104 |||||||||| ||| | || ||||||| |||||||||||||||||||||||||||||| Sbjct 14 AAGTGAGATGGAGG--CA-GACGAGATCGCAAAACCAGCGAAACCAAAAGCCAAGAAAGA 70 Query 105 TGTTGCTCCTGGGAGGTTGATTGATACCTATGCTGCACAGTGCGATAACTGTCACAAGTG 164 ||| || ||||||||||| ||||||||||||||||| ||||| |||||||||||||| Sbjct 71 CACTGCGCCAGGGAGGTTGATCGATACCTATGCTGCACAATGCGAAAACTGTCACAAGTG 130 Query 165 GAGGGTGATTGATAGCCAGGAGGAATATGAAGATATCAGAAGTAAAATGCTCGAGGATCC 224 |||||||||||||||||| ||||| ||||| |||||||||||||||||||| ||||| || Sbjct 131 GAGGGTGATTGATAGCCAAGAGGAGTATGAGGATATCAGAAGTAAAATGCTTGAGGACCC 190 Query 225 TTTTAACTGTCAGAAGAAACAGGGCATGTCTTGTGAAGAGCCTGCTGATATTGACTACGA 284 |||||||||||||||||||||||||||||| |||||||||||||||||| ||||||| || Sbjct 191 TTTTAACTGTCAGAAGAAACAGGGCATGTCCTGTGAAGAGCCTGCTGATCTTGACTATGA 250 Query 285 TTCTTCTCGGACTTGGGTCATTGACAAGCCTGGTCTCCCCAAAACGCCTAAAGGTTTCAA 344 ||| || ||||||||||||| ||||||||||||||||||||||||||| ||||||||| Sbjct 251 TTCCTCAAGGACTTGGGTCATCGACAAGCCTGGTCTCCCCAAAACGCCTCAAGGTTTCAG 310 Query 345 GAGAAGCTTAGTTCTCAGAAAAGATTACTCTAAGATGGATACCTACTACTTTACTCCTAC 404 ||| |||||||| ||||| ||||| ||||||||||||||||||||||| |||||||| || Sbjct 311 GAGGAGCTTAGTCCTCAGGAAAGACTACTCTAAGATGGATACCTACTATTTTACTCCAAC 370 Query 405 CGGGAAGAAGCTCAGGAGTCGCAATGAAATCGCTGCCTTCGTTGAAGCCAATCCGGAATT 464 |||||||||||| |||||||||||||||||||| ||||| |||||||||||||||||||| Sbjct 371 CGGGAAGAAGCTGAGGAGTCGCAATGAAATCGCAGCCTTTGTTGAAGCCAATCCGGAATT 430 Query 465 CAGGAACGCACCACTTGGAGACTTCAATTTCACTGTCCCCAAGGTCATGGAAGATACTGT 524 || ||||||||| || |||||||||||||| ||||||||||||||||||||||||||||| Sbjct 431 CAAGAACGCACCCCTCGGAGACTTCAATTTTACTGTCCCCAAGGTCATGGAAGATACTGT 490 Query 525 TCCCCCTGATCCGAAGCTTGGCTCTCCTTTTCCAAGCACTACTACCACTACTTCAGAGAA 584 ||| |||||||| ||||||| ||||||| || | ||||||||||| ||||||| Sbjct 491 TCCTCCTGATCCTAAGCTTGCCTCTCCTATT--------T-CTACCACTACTACAGAGAA 541 Query 585 GAGCAGTGTCAAGCAGAGCCATAA-CTAATATGTTCTC 621 ||||||| ||||||||| ||| | ||||||||||||| Sbjct 542 GAGCAGTTTCAAGCAGATCCA-AGGCTAATATGTTCTC 578 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 28935294003 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5