BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G63060.1 Length=1184 Score E Sequences producing significant alignments: (Bits) Value Ahg486810 jgi|Araly1|486810|fgenesh2_kg.5__2802__AT3G63060.1 1445 0.0 > Ahg486810 jgi|Araly1|486810|fgenesh2_kg.5__2802__AT3G63060.1 Length=975 Score = 1445 bits (782), Expect = 0.0 Identities = 886/934 (95%), Gaps = 15/934 (2%) Strand=Plus/Plus Query 17 AATGCTTCTAGAGGGAAGATTCTCCGTCGTCCAGATGAACACGAATAGACGGCTCAAATT 76 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||| Sbjct 1 AATGCTTCTAGAGGGAAAATTCTCCGTCGTCCAGATGAACACGAATAGACGGCTCAGATT 60 Query 77 TAACCAACCGAGTCGATTACCCAACTCGGGTAAGTCAGGTATAGAGAATGAGCGAGTCCT 136 ||||||||||||||||||||||| ||| ||| |||||||||||||||| ||||||||||| Sbjct 61 TAACCAACCGAGTCGATTACCCAGCTCAGGTGAGTCAGGTATAGAGAACGAGCGAGTCCT 120 Query 137 GGTTCTTGTCTTCGAGTCCATTAGCTGGGACATCCACACGCTATGCACAATCGCCTCCCT 196 |||||| ||||||||||||||||||||||||||||||||||||||| |||| |||||||| Sbjct 121 GGTTCTCGTCTTCGAGTCCATTAGCTGGGACATCCACACGCTATGCGCAATTGCCTCCCT 180 Query 197 CAGCCGCAGATTCTGCGCAATCGCCAGACGAATTCTGTGGCGGCGGCTCTGTGTGAACCG 256 |||||||||||||||||||||||||| |||||||||||||||||||||||| || ||||| Sbjct 181 CAGCCGCAGATTCTGCGCAATCGCCAAACGAATTCTGTGGCGGCGGCTCTGCGTAAACCG 240 Query 257 TGCGCCAGGGATGGTGGCGGCATTGTCCGGCGAAGATCCCAGCGGTCGAATCGACGGCGG 316 |||||| ||||||||||| |||||||||||| |||||||||||| || ||||||||||| Sbjct 241 TGCGCCGGGGATGGTGGCAGCATTGTCCGGCTCAGATCCCAGCGGCCGGATCGACGGCGG 300 Query 317 CTGGCACGCGTTAGCGAAACTCATGTTCTTCTGCGGCGGGGGTGAGTCGACTCGGTATTT 376 |||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||| Sbjct 301 ATGGCACGCGTTAGCGAAACTCATGTTCTTCTGCGCCGGAGGTGAGTCGACTCGGTATTT 360 Query 377 CAATCTGAGTCAACCGACGTCGGGTCACTTCGCCTGCGAGTCCAGATTCTCCAAGACATC 436 |||||||||||||||| || |||||||||||||||||||||||||||||||||||||||| Sbjct 361 CAATCTGAGTCAACCGTCGCCGGGTCACTTCGCCTGCGAGTCCAGATTCTCCAAGACATC 420 Query 437 CGGGAGATTCTTCCTGCCAAAGAATTGCCGCCGTGATCTCCTATACATGAGCGATCCGTG 496 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 421 CGGGAGATTCTTCCTGCCGAAGAATTGCCGCCGTGATCTCCTATACATGAGCGATCCGTG 480 Query 497 CGAGCATCAGGCGGTGGGTGGAGATGAGCATTTAGGGGTTTTCAGAGGGGTATTTCGGGA 556 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 481 CGAGCATCACGCGGTGGGTGGAGATGAGCATTTAGGGGTTTTCAGAGGGGTATTTCGGGA 540 Query 557 ATTTATGAGGTCAAAGACGAGGGAGTGTCTCGTGAGAAGACAAGCGGCGCTGGAGGAGAA 616 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 541 ATTTATGAGGTCAAAGACGAGGGAGTGTCTCGTGAGAAGACAAGCGGCGCTGGAGGAGAA 600 Query 617 GGTTAGGTGTCCGTATTGCGGAGGGCGCGTGTGGAGCATGACGGCGGCGCGTCTCGTCCC 676 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 601 GGTTAGGTGTCCGTATTGCGGAGGGCGCGTGTGGAGCATGACGGCGGCGCGTCTTGTCCC 660 Query 677 GAAGAGTGCGGCGCGGCGGCTGGGATCACGTGAAGGTGGGTTAGAGTTCTTCGTGTGCGT 736 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 661 GAAGAGTGCGGCGCGGCGGCTGGGATCACGTGAAGGTGGGTTAGAGTTCTTCGTATGCGT 720 Query 737 GAACGGTCACTTGCACGGCACTTGCTGGCTGATTCCGCTTTCATCGGAGGAAGAAGACAA 796 |||||||||||||||||||| |||||||||||||||||||| ||||| | ||||| | Sbjct 721 CAACGGTCACTTGCACGGCACCTGCTGGCTGATTCCGCTTTCGTCGGA--A-GAAGA-A- 775 Query 797 TGGAGAAGACGACGACAACAGTGACGGAAGTGTGATCTAATCCAATGGTGGTGGCGATGT 856 | | |||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 776 -G-A-----CGACGACAACAGTGACGGCAGTGTGATCTAATCCAATGGTGGTGGCGATGT 828 Query 857 CCACGTGGAATTAGGTCTCTTGGGCCATATGCAAACCACAAGAGGAAAATCTCAGTTAGA 916 |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 829 CCACGTGGAATTAGGTCTCTTGGGGCATATGCAAACCACAAGAGGAAAATCTCAGTTAGA 888 Query 917 TT--T-CTCCTATGAGATGTGGAGCTCACTAGTA 947 || | ||||||||| |||||||||||||||||| Sbjct 889 TTCATTCTCCTATGACATGTGGAGCTCACTAGTA 922 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 44184460803 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5