BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G63070.1 Length=4429 Score E Sequences producing significant alignments: (Bits) Value Ahg486811 jgi|Araly1|486811|fgenesh2_kg.5__2803__AT3G63070.1 6525 0.0 Ahg484006 jgi|Araly1|484006|fgenesh2_kg.4__3066__AT2G48160.1 983 0.0 > Ahg486811 jgi|Araly1|486811|fgenesh2_kg.5__2803__AT3G63070.1 Length=4361 Score = 6525 bits (3533), Expect = 0.0 Identities = 4124/4404 (94%), Gaps = 62/4404 (1%) Strand=Plus/Plus Query 1 TCGTGTGTGAATGTTTCTCTTCCACAAAAGCGATAGAATCCACCAGAAATCTTCGATTGT 60 |||||||||||| |||||||||| |||||||||| |||||||||| ||||||| ||||| Sbjct 1 TCGTGTGTGAATATTTCTCTTCCGGAAAAGCGATAAAATCCACCAGCAATCTTCTATTGT 60 Query 61 CTCTCTCCCTCATCTCAATTAGGGTTTACGGGACCGATTTTCTTCTGTCTTGCGTGCCTA 120 ||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 61 CTCTCTCGCTCGTCTCAATTAGGGTTTACGGGACCGATTTTCTTCTGTCTTGCGTGCCTA 120 Query 121 CATCCGTCGATTGGGTTGGGAATTTTCAATGCCTGCGAGTTCTTTAGCGGAATCTGTCTC 180 ||||||||||||||||| | | ||||||||||||||||||||| |||||||||||||| | Sbjct 121 CATCCGTCGATTGGGTTCGTATTTTTCAATGCCTGCGAGTTCTATAGCGGAATCTGTCAC 180 Query 181 CGAAAACCCTAGGCACTGCCGAGCTGCTAATTTTCGCCTGTGGTTCTGGCTTAACTTCGA 240 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 181 CGAAAACCCTAGGCACTGCCGAGCTGCTAATTTTCGCCTGCGGTTCTGGCTTAACTTCGA 240 Query 241 GAGTTAGAATCCTTACCTTTTCCTT-TTCTGATTTTCGTTGtttttttttCTTCTGAATT 299 ||||||||||||||||||||||||| || ||||||||| || ||||||||| ||||||| Sbjct 241 GAGTTAGAATCCTTACCTTTTCCTTATT-TGATTTTCGCTG-TTTTTTTTC--CTGAATT 296 Query 300 CCGATGGCTCCGAGCCGCAAGAGAGGGGGTGGTAGGGCTGCGGCGGCATCATCCGCTCGC 359 |||||||||||||||||||||| ||| ||||||| ||||||||||||||||||||||||| Sbjct 297 CCGATGGCTCCGAGCCGCAAGAAAGGCGGTGGTAAGGCTGCGGCGGCATCATCCGCTCGC 356 Query 360 CGAGAGT------GGAAGGTTGGCGATCTCGTTCTTGCCAAAGTCAAAGGATTTCCTGCT 413 ||||||| ||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 357 CGAGAGTGGAAGGGGAAGGTTGGCGATCTCGTGCTTGCCAAAGTCAAAGGATTTCCTGCT 416 Query 414 TGGCCTGCCGTGGTTGA-CGAACCGGAAAAATGGGGCCACTCAGCCGATTCGAAGAAAGT 472 |||||||||| |||| | ||||||||||||||||||| |||||||||||||||||||||| Sbjct 417 TGGCCTGCCGCGGTT-AGCGAACCGGAAAAATGGGGCTACTCAGCCGATTCGAAGAAAGT 475 Query 473 AACT-GTTCACTTTTTTGGCACTCAACAGATAGCTTTTTGCAATCATGGTGATGTTGAAT 531 | | |||||||||||||||||||||||||||||| | ||||||| || ||||||||||| Sbjct 476 -ATTAGTTCACTTTTTTGGCACTCAACAGATAGCTCTCTGCAATCCTGCTGATGTTGAAT 534 Query 532 CATTTACTGAGGAGAAGAAGCAATCACTTTTGACAAGACGGCACGCCAAAGGTTCAGATT 591 ||||||| ||||||||||||||||| |||||||||| ||| || |||||||||||||||| Sbjct 535 CATTTACGGAGGAGAAGAAGCAATCGCTTTTGACAAAACGACATGCCAAAGGTTCAGATT 594 Query 592 TTGTCCGTGCTGTCAAGGAGATCACAGAGAGTTACGAGAAGCTGAAGCAGCAGGACCAAG 651 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 595 TTGTCCGTGCCGTCAAGGAGATCACAGAGAGTTACGAGAAGCTGAAGCAGCAGGACCAAG 654 Query 652 CTAGTGGGCCTAAATATGCTGAAGAAACAACTGCTGGAAGTTCTGGGAACACT-TCACAG 710 |||||| ||||||| ||||||||||||||||| ||||||||||| ||||||| | |||| Sbjct 655 CTAGTGATCCTAAATGTGCTGAAGAAACAACTGTTGGAAGTTCTGCGAACACTGT-ACAG 713 Query 711 CTGCCTCAGGCCTGTGAAAATCTAATTGGTTCAAGACTTGACACTCAAATAGAGTCAAGT 770 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 714 CTGCCTCAGGCCTGTGAAAATCTAATTGGTTCAAGACTTAACACTCAAATAGAGTCAAGT 773 Query 771 TCTAGTCATGGTAGAGATGAGTTGACTCTTCTCAGCGAAGATGCTTCAGCTGCTGAACAA 830 |||||||||||||||||||| | |||||||||||||||||||| |||||||||||||| Sbjct 774 TCTAGTCATGGTAGAGATGAATCGACTCTTCTCAGCGAAGATG---CAGCTGCTGAACAA 830 Query 831 ATGCTAGCCCTGCGTCATAACACTCTAGCTCATAATGGTGCCTGTGATAGTGCAGCAGCT 890 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 831 ATGCTAGCCCTGCGTCATAACACTCTAGCTCATAATGGAGCCTGTGATAGTGCAGCAGCT 890 Query 891 AAAGATCTATGTGAGATAGCTACATATTCCTCAAGGAGAAGAAATGAAAGGGTGCGGGCT 950 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 891 AAAGATCTATGTGAGATAGCTACATATTCTTCAAGGAGAAGAAATGAAAGGGTGCGGGCT 950 Query 951 CTAAAGTATGCTCCACAGAGTATAATATTACCGGTTGAGCACTCTAAAATCTCATCAAGG 1010 ||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 951 CTAAAGTGTGCTCCACAAAGTATAATATTACCGGTTGAGCACTCTAAAATCTCATCAAGG 1010 Query 1011 TTGGAATTGGATAGAGTTCAAAGGTCCATGCTTCAATGCAGTGATGGTGGTCCAAGTGTC 1070 ||||||||||||||| |||||||||||||||||||||||||||||||||| || |||||| Sbjct 1011 TTGGAATTGGATAGACTTCAAAGGTCCATGCTTCAATGCAGTGATGGTGGCCCGAGTGTC 1070 Query 1071 AATAGTATAAATGGCAA-AGCTATAAGAAGGAGAAAAAGAATCCGTACGTCAGGTCAATC 1129 ||| ||||| || | || ||| ||||||||||||||||| ||||||| |||||||||||| Sbjct 1071 AATGGTATAGAT-GAAAGAGCCATAAGAAGGAGAAAAAGGATCCGTAGGTCAGGTCAATC 1129 Query 1130 TGAATCAGATGACGTGGTTTCATCAGATCTAAATCTGCACGGATCTGATGAGGACAACGC 1189 ||||||||||||||| |||||||||||||||||| ||||||||||||||||||| ||||| Sbjct 1130 TGAATCAGATGACGTTGTTTCATCAGATCTAAATTTGCACGGATCTGATGAGGAGAACGC 1189 Query 1190 ATCTGAAATTGCTACAGTTGAATCTAACAATAATAGTAGGAATGAAGGCAATGGTGTGGA 1249 |||||||||||| |||||||||||| | |||||||||||||||||||||||||||||||| Sbjct 1190 ATCTGAAATTGCGACAGTTGAATCTGATAATAATAGTAGGAATGAAGGCAATGGTGTGGA 1249 Query 1250 TTCTGGTTCCAAAGTTGAGTATTCTGATGCCGTTGGTGAGGGTTGTGACGGAGGTCATGA 1309 ||||||||||||||||||| |||||||| | |||| ||| |||||||||||||||||||| Sbjct 1250 TTCTGGTTCCAAAGTTGAGCATTCTGATACTGTTGCTGACGGTTGTGACGGAGGTCATGA 1309 Query 1310 GCTTAACAAAGGGCTTGATTTTCATATTAGCACCATGGTTAAGAGGAAGAAGAGGAAACC 1369 ||| ||||||||||||||||| || |||||||||||||||||||||||||||||||| || Sbjct 1310 GCTCAACAAAGGGCTTGATTTCCAAATTAGCACCATGGTTAAGAGGAAGAAGAGGAAGCC 1369 Query 1370 CACCAGAAAACGTGAAACCAGTGACATTATTGACCCTCCTGCTAAAGTTGAAGCAGAAGG 1429 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1370 CACCAGGAAACGTGAAACCAGTGACATTATTGACCCTCCTGCTAAAGTTGAAGCAGAAGG 1429 Query 1430 TCTTGGGCCCAATGCATGTGATAGCTGCCAGAGATCTCAAAATTCTCATGAAAGGCTGAA 1489 ||||||||||||||| ||||| |||||||||||||||||||||||||||||||||| ||| Sbjct 1430 TCTTGGGCCCAATGCTTGTGACAGCTGCCAGAGATCTCAAAATTCTCATGAAAGGCCGAA 1489 Query 1490 TGAGAGGCCCTGTGAAGAGAATGGTGATGAACATTTGCCTCTGGTAAAGCGAGCCAGAGT 1549 |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 1490 TGAGAGGCCCTGTGAAGAGAATGGTGATGAACATTTGCCTCTTGTAAAGCGAGCCAGAGT 1549 Query 1550 TCGAATGAGTAGAGCTTTTTATGCTGATGAAAAGGTCAATGCCTCTTCACAGGTGGAAGA 1609 ||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||| Sbjct 1550 CCGAATGAGTAGAGCTTTTTATGCTGATGAAAAGGTCAATACCTCTTCACAGGTCGAAGA 1609 Query 1610 GAGATCGTCGAAAGACACCCTACTAAGTGCAGCTTTGCAGACAAGCCCTTCTGTGAATCA 1669 |||||| ||||||||||| ||| | |||||||||||||||||||||||||| |||||||| Sbjct 1610 GAGATCATCGAAAGACACTCTAATGAGTGCAGCTTTGCAGACAAGCCCTTCGGTGAATCA 1669 Query 1670 TGAAAATGGTATTGGTTCTGGTCATGATACTTCTGCAGCCGAAGAATTTAACAGCTTTGA 1729 |||||||| ||||| ||||| |||||||||||||||||||||| |||||||||||||||| Sbjct 1670 TGAAAATGATATTGTTTCTGTTCATGATACTTCTGCAGCCGAAAAATTTAACAGCTTTGA 1729 Query 1730 GTTGTCTGCTAAGCTTTCAGGTGTTATGGTTGATGTAGTGCCTTCTCATATGGAGAAACC 1789 |||||||||||||||||||| |||||||||||||||||||||||||||||||||||| | Sbjct 1730 GTTGTCTGCTAAGCTTTCAGATGTTATGGTTGATGTAGTGCCTTCTCATATGGAGAATTC 1789 Query 1790 TTCAGACAGAATGTCTCCTTCT-GTGGCCTGTGTTCAGACTGTAGGAGATAGACAAACGG 1848 |||||||||||||||||| ||| | ||||||||||||||||||||||||||||||||| | Sbjct 1790 TTCAGACAGAATGTCTCCGTCTAG-GGCCTGTGTTCAGACTGTAGGAGATAGACAAACTG 1848 Query 1849 CTGTGAATTTCCATGAGAACGAGTTTACCATGACACTAGATGATGAAGTAACTCGAGCAC 1908 ||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 1849 CTGTGAAATTCCATGAGAACGTGTTTACCATGACACTAGATGATGAAGTAACTCGAGCAC 1908 Query 1909 AATCTAACCAACTTAGCAGTTTGGTAGAAACAGAAGCTCGTGTTCCTGAAGTAGTTCAGG 1968 |||||||||||||||||||||||| ||||| | |||||| ||| |||||||||||||||| Sbjct 1909 AATCTAACCAACTTAGCAGTTTGGCAGAAAGAAAAGCTCATGTGCCTGAAGTAGTTCAGG 1968 Query 1969 GATGTTCTGAGGAATCGCAAACTGGGAACTGTCTAATTAGTGAGACTGATCCTATTGATA 2028 |||||||||||||||||||||| ||||||||||||| |||||| || ||||||| ||| | Sbjct 1969 GATGTTCTGAGGAATCGCAAACCGGGAACTGTCTAAATAGTGAAACCGATCCTACTGACA 2028 Query 2029 TACAATGCTCACATCAAAGTGAGAAACATGAAACCCCTTTGAATCCTGATATCGTTGATT 2088 | |||||||||| ||||| ||||||| |||||||||| |||||||||||||||||||||| Sbjct 2029 TGCAATGCTCACTTCAAAATGAGAAAAATGAAACCCCGTTGAATCCTGATATCGTTGATT 2088 Query 2089 CATCTGCAAATAAGTCCCCCGGTTTATGCTCGAGTTTGGATATGACAACAACAGTGGTAC 2148 |||| || | |||||||| ||||||||||||||||||||||||||||||| || ||| | Sbjct 2089 CATCGGC--A-AAGTCCCCTGGTTTATGCTCGAGTTTGGATATGACAACAATAGGGGTTC 2145 Query 2149 CTGCTCAATCTCCTCACCAACACAAAATCCAGGAGTATGATTCTAGTGACCATTCATTGG 2208 ||||||||||||||||||||||| ||| |||||||||||||||| ||||||||||||||| Sbjct 2146 CTGCTCAATCTCCTCACCAACACCAAAGCCAGGAGTATGATTCTGGTGACCATTCATTGG 2205 Query 2209 TCATTGTTGGAGATTCTCTTAATGGAAAATGTGAGAAAATTGATTACTGTATGACTCAGG 2268 |||||| ||||||||||||||||| |||||||||||||||||||||| |||||||||||| Sbjct 2206 TCATTGGTGGAGATTCTCTTAATGAAAAATGTGAGAAAATTGATTACCGTATGACTCAGG 2265 Query 2269 TTGTTCAGTCCCAAGCCTTAGAACCGCCGCCTCCATTGTTCTGTTCAGTGGTCAATTATC 2328 |||||||||||||||| |||||| || |||||||||||||||||||||||||||||| Sbjct 2266 TTGTTCAGTCCCAAGCTTTAGAA---CCTCCTCCATTGTTCTGTTCAGTGGTCAATTATG 2322 Query 2329 AGGAGGTTGAAAACCTGCAGGAGACTGAAAATACTCTTTGGAAAGAAAACCAAGGAAGTC 2388 | ||||||||||||| |||||||||||| || ||||| ||||||||||||||||||||| Sbjct 2323 AAGAGGTTGAAAACCCGCAGGAGACTGAGAACACTCTACGGAAAGAAAACCAAGGAAGTC 2382 Query 2389 CCGGTAAAGAACTTGATAGTGACAAACAAGCTCACATGATACAGAATCCAGTACTCTCTG 2448 | ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 2383 CGGGTAAAGAACTTGATAGTGACAAACAAGCTCACATGATACAGAATCCAGCACTCTCTG 2442 Query 2449 CTACTGAAAGTGAAATGATCGTAGATGATGCGGAACCTCAGTATGAAACTGTATATAGTC 2508 |||||||||||||||||||||| || || || |||||||||||||||||| | ||| ||| Sbjct 2443 CTACTGAAAGTGAAATGATCGTTGAAGAAGCAGAACCTCAGTATGAAACTATGTATGGTC 2502 Query 2509 ACTGTGCAGATGCTGTGGAGAACAGAGAGCTGGAAAAGAGTTGTGAGGTTGATGAGCAGA 2568 ||||||| ||||| |||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 2503 ACTGTGCGGATGCAGTGGAGAACATAGAGCTGGAAAAGAGTTGTGAGGTTGATGAGCAGA 2562 Query 2569 AGGAGCAGATGCAAGCCACCAATTCTATCTCAGTATCTGAGAACTTTTCACGTGAAAAAT 2628 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 2563 AGGAGCAGATGCAAGCCACCAATTCTATCTCAGTATCTGAGAACCTTTCACGTGAAAAAT 2622 Query 2629 TGAATTCATCTCCTGCAAGGGGTACTCCAAATTGCAACTCAGTATGCCGAATTTCTACCG 2688 ||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||| Sbjct 2623 TGAATTCATCTCCTGCAAGGGGTACTCCACATTGCAACTCTGTATGCCGAATTTCTACCG 2682 Query 2689 CAGAAAGTGAAAATGCTATGCA-GAACAACAGTTATTACAGCACCAATGTTCAGTATGGT 2747 ||||||||| |||||||||||| ||| |||||| ||| ||||||||||||||||| |||| Sbjct 2683 CAGAAAGTGCAAATGCTATGCAGGAA-AACAGTAATTGCAGCACCAATGTTCAGTTTGGT 2741 Query 2748 GAGAACAAATCATTAAATGTTGACACTGTCAAAGAAGAAAGCAAAGTTGAAACAGGCACA 2807 ||| | |||||||| ||| ||||||||||||||||||||||||||||||||||||| || Sbjct 2742 GAGGAGAAATCATTGAATAATGACACTGTCAAAGAAGAAAGCAAAGTTGAAACAGGCCCA 2801 Query 2808 ACTCAGGTGAAGAAAGTTGTTAGTTCTGATGTGCAATGCACTGTTGAGTCTTTTGAGACT 2867 |||||||||||||||||| |||||||||||||||||| ||||||||| |||||||||||| Sbjct 2802 ACTCAGGTGAAGAAAGTTATTAGTTCTGATGTGCAATTCACTGTTGAATCTTTTGAGACT 2861 Query 2868 GCACTTGACTCATTGGTGAGGACAAAGGAGACCATTGGCCGAGCAACTCGCTTGGCTATG 2927 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2862 GCACTTGACTCATTGGTGAGGACAAAGGAGACCATTGGCCGAGCAACTCGCTTGGCTATG 2921 Query 2928 GACTTGGCGAAATTTGGCGTTTCAGCAAAGGCGATGGAAATTCTGGCCCACACTTTGGAA 2987 |||||||| |||||||| || || |||||||||||||||||||||||||| ||||||||| Sbjct 2922 GACTTGGCAAAATTTGGTGTGTCGGCAAAGGCGATGGAAATTCTGGCCCATACTTTGGAA 2981 Query 2988 AGTGAGTCAAATTTACAAAGGAGGGTGGATTTATTTTTCCTTGTGGATTCTATTGCTCAG 3047 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2982 AGCGAGTCAAATTTACAAAGGAGGGTGGATTTATTTTTCCTTGTGGATTCTATTGCTCAG 3041 Query 3048 TGCTCCAAAGGTTTGAATGGTGATGCTGGTGGTGTTTATCTTTCATCCATTCAGGCTATG 3107 |||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 3042 TGCTCCAAAGGTCTGAATGGTGATGCTGGTGGTGTTTATCTTTCATCCATTCAAGCTATG 3101 Query 3108 CTACCTCGCCTATTAACTGCTGCTGTCCCAGCTGGAGCTACCACACAAGAAAACCGAAAA 3167 || ||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||| Sbjct 3102 CTGCCTCGCCTATTAACTGCTGCTGTTCCAGCTGGAGCTACCACACAAGAAAACCGGAAA 3161 Query 3168 CAGTGCTTGAAGGTTTTGAGGCTTTGGCTTGAAAGACGGATCCTTCCTGAATCTATAGTT 3227 |||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 3162 CAGTGCCTGAAGGTTTTGAGGCTTTGGCTCGAAAGACGGATCCTTCCTGAATCTATAGTT 3221 Query 3228 CGTCACCATATAAGAGAACTTGATTC-GCTTAGTAATGTTCCTGCTTGCCTCTATTCTCG 3286 |||||||||||||||||||||||||| | ||||||||||||||||||| ||||||||||| Sbjct 3222 CGTCACCATATAAGAGAACTTGATTCAG-TTAGTAATGTTCCTGCTTGTCTCTATTCTCG 3280 Query 3287 GCGATCCGCTCGAACAGAAAGGGCGCTGGATGACCCTGTTAGAGATATGGAGGGTATACT 3346 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 3281 GCGATCTGCTCGAACAGAAAGGGCGCTGGATGACCCTGTTAGAGATATGGAGGGTATACT 3340 Query 3347 GGTGGATGAATATGGAAGTAATTCAACTCTCCAGCTTCATGGATTCTGCATACCTCCAAT 3406 ||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||| Sbjct 3341 GGTGGATGAATATGGAAGTAATTCAACTCTCCAGCTTCATGGATTCTGCATGCCTGCAAT 3400 Query 3407 ACTTAGGGATGAAGACGAAGGAAGTGACTCGGATGGGGGTGATTTTGAGTCTGTCACCCC 3466 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 3401 GCTTAGGGATGAAGACGAAGGAAGTGACTCGGATGGGGGTGATTTTGAGTCTGTCACCCC 3460 Query 3467 TGAACACGAGTCAAGAAGCCTTGAAGAACATGTCACACCGTCCATTACCGAAAGGCATAC 3526 |||||| ||||| |||||||||||||||||||||||||| |||||||| ||||||||||| Sbjct 3461 TGAACATGAGTCCAGAAGCCTTGAAGAACATGTCACACCCTCCATTACTGAAAGGCATAC 3520 Query 3527 CCGTATACTGGAAGATGTTGATGGTGAGCTTGAAATGGAAGACGTGGCTCCACCTTGGGA 3586 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 3521 CCGTATATTGGAAGATGTTGATGGTGAGCTTGAAATGGAAGACGTGGCTCCACCTTGGGA 3580 Query 3587 AGGTGGAAGCAGTGCTAGTGCGATCACAGATCAAGCTGATAATAGAGAGTCTGCAAATTG 3646 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 3581 AGGTGGAAGCAGTACTAGTGCGATCACAGATCAAGCTGATAATAGAGAGTCTGCAAATTG 3640 Query 3647 TCTGCTTGTCCCTGGAACTTCACATCAGAATGTTACCTCGTCATCTCCACCAGCTCGCCC 3706 || || |||| |||| ||||||||||||||||||||||| |||||||||||||||| ||| Sbjct 3641 TCAGCCTGTCTCTGGCACTTCACATCAGAATGTTACCTCTTCATCTCCACCAGCTCCCCC 3700 Query 3707 TTCGCAGAATGCTCAGTTGGCAATGTCTAATTCCTACTCAAATGGCTTTGACTACCGCAG 3766 |||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||| Sbjct 3701 TTCGCAGAATGCTCAGTTGGCAATGTCTGATTCCTACTCAAATGGCTTTGACTACAGCAG 3760 Query 3767 AAATCCCAGCATGCAGGGCGACTATCATGCCGGTCCTCCAAGGATGAATCCCCCAATGCA 3826 ||||||||||||||| || || ||||| ||||||||||||| || || | | Sbjct 3761 AAATCCCAGCATGCATGGAGATTATCAGGCCGGTCCTCCAA---TGCAT-------T--A 3808 Query 3827 TTACGGAAGTCCTGAACCATCTTATAGTTCCCGAGTATCTTTGTCAAAAAGCATGCCACG 3886 | |||||||| || |||||||||||||||| |||||||||||||||||||||| || Sbjct 3809 T---GGAAGTCCCGAGTCATCTTATAGTTCCCGCGTATCTTTGTCAAAAAGCATGCTGCG 3865 Query 3887 TGGGGAGGGTTCTAACTTCCAGCATAGGCCATATCCATCTTCTCATCCCCCACCTCCTCC 3946 |||||||||||||||||||||||||||||| || ||||||||||||| |||||||| Sbjct 3866 TGGGGAGGGTTCTAACTTCCAGCATAGGCCTTACCCATCTTCTCATCTACCACCTCC--- 3922 Query 3947 GCCATCACATCATTATTCATATATGGAGCCGGACCACCATATAAAGTCGCGGAGAGAAGG 4006 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 3923 GCCATCACATCATTATTCATATATGGAGCAGGACCACCATATAAAGTCGCGGAGAGAAGG 3982 Query 4007 TCTATCATACCCTCACAGATCTCATTACACACTGGAATTTGACGAAAGGAATTATCAAGA 4066 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 3983 TCCATCATACCCTCACAGATCTCATTACACACTGGAATTTGACGAAAGGAATTATCAAGA 4042 Query 4067 CAGCTATGAGAGAATGAGGCCTGAACCATGCGAGAATCGAGACAATTGGAGATATCATCC 4126 ||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||| Sbjct 4043 CAGCTATGAGAGAATGAGGCCTGCACCATGTGAGAATCGAGACAATTGGAGATATCATCC 4102 Query 4127 GCCCTCTTCTCATGGTCCACGATATCATGACAGACACAAAGGACCTCATCAATCGAGCTC 4186 |||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||| Sbjct 4103 GCCCTCTTCTCATGGTCCACGATATCATGACAGACACAAAGGCCCTTATCAATCGAGCTC 4162 Query 4187 ATACAGTGGGCATCACCGTGACTCAGGAAGGTTGCAGAACAATAGGTGGAGTGATTCTCC 4246 ||||||||| |||||||||||||| ||||| || |||||||||||||||||| ||||||| Sbjct 4163 ATACAGTGGCCATCACCGTGACTCTGGAAGATTTCAGAACAATAGGTGGAGTCATTCTCC 4222 Query 4247 GCGTGCATATAACAATAGACACTC-TTATCACTATAAGCAGCATTCGGAAGGTCCTGTTC 4305 |||||||||||||| ||||||||| || ||||||||||| |||||||||||||||||||| Sbjct 4223 GCGTGCATATAACAGTAGACACTCGTT-TCACTATAAGCCGCATTCGGAAGGTCCTGTTC 4281 Query 4306 CAGTAGGAATGAGAGATCC---AGGGACGTGGCATCAAAGGTGAGTGGGAGACAAGAGAT 4362 ||||||||||||||||||| |||||||||||||||||||||||||||||||| | | Sbjct 4282 CAGTAGGAATGAGAGATCCTCCAGGGACGTGGCATCAAAGGTGAGTGGGAGACATG---T 4338 Query 4363 GAAGAAGG-GCAAAGGTGCAGTCT 4385 ||||||| | ||||||||||||| Sbjct 4339 CAAGAAGGCG-AAAGGTGCAGTCT 4361 > Ahg484006 jgi|Araly1|484006|fgenesh2_kg.4__3066__AT2G48160.1 Length=4601 Score = 983 bits (532), Expect = 0.0 Identities = 1310/1673 (78%), Gaps = 104/1673 (6%) Strand=Plus/Plus Query 302 GATGGCTCCGAGCCGCAAGAGAGGGGGTGGTAGGGCTGCGGCGGCATCAT-CCG-CTCGC 359 ||||||||||||||||| || ||| ||||||| |||||| || | | | | ||| || || Sbjct 172 GATGGCTCCGAGCCGCAGGAAAGGCGGTGGTAAGGCTGCCGCCGTAGC-TGCCGCCT-GC 229 Query 360 CGAGAGTGGAAGGTTGGCGATCTCGTTCTTGCCAAAGTCAAAGGATTTCCTGCTTGGCCT 419 | | |||||||||| ||||| || || ||||||||||||||||| ||||||||||||||| Sbjct 230 CTAAAGTGGAAGGTGGGCGACCTTGTGCTTGCCAAAGTCAAAGGTTTTCCTGCTTGGCCT 289 Query 420 GCCGTGGTTGA-CGAACCGGAAAAATGGGGCCA-C-TCAGCCGATTCGAAGAAAGTAACT 476 |||| |||| | || || ||||| ||||| | | ||| |||||| ||||||||| | Sbjct 290 GCCGCGGTT-AGTGAGCCAGAAAAGTGGGG--AGCTTCAACCGATTTGAAGAAAGTCTTT 346 Query 477 GTTCACTTTTTTGGCACTCAACAGATAGCTTTTTGCAATCATGGTGATGTTGAATCATTT 536 |||||||||||||| || |||||||||||||| ||||||||| ||||||||| ||||| Sbjct 347 GTTCACTTTTTTGGAACACAACAGATAGCTTTCTGCAATCATACCGATGTTGAAGCATTT 406 Query 537 ACTGAGGAGAAGAAGCAATCACTTTTGACAAGACGGCACGCCAAAGGTTCAGATTTTGTC 596 || || |||| |||||||||||||||||||| ||| || || ||||||||||||||||| Sbjct 407 ACAGACGAGAGGAAGCAATCACTTTTGACAAAACGCCATGCGAAAGGTTCAGATTTTGTT 466 Query 597 CGTGCTGTCAAGGAGATCACAGAGAGTTACGAGAAGCTGAAGCAGCAGGACCAAGCTAGT 656 |||||||| |||||||| | ||||||||| |||||||| |||||||| || |||||| || Sbjct 467 CGTGCTGTAAAGGAGATTATAGAGAGTTATGAGAAGCTTAAGCAGCAAGAACAAGCTGGT 526 Query 657 GGGCCTAAATATGCTGAAGAAACAACTGCTGGA-AGTTCTG-GGAACACTTCACAGCTGC 714 | || |||| |||||||||| | ||| || || ||| ||| || | ||| ||| | ||| Sbjct 527 GATCCCAAATCTGCTGAAGAAGCCACT-CTTGAGAGTGCTGAGG-ATACTACACTGATGC 584 Query 715 CTCAGGCCTGTGAAAATCTAATTGGTTCAAGACTTGACACTCAAATAG-AGTCAAGTT-C 772 |||||| | |||||| || || ||| |||| | | | || ||||| | |||| ||| | Sbjct 585 CTCAGGTCAGTGAAATTCCAACTGGGACAAGTC-T-A-ACACAAAT-GAAGTC-TGTTCC 639 Query 773 TAGTCATGGTAGAGATGAGT-TGACTCTTCTCAGCGAAGATGCTTCAGCTGCTGAACAAA 831 |||||||||||||||||| | | ||| | || | || |||||||||||||||||||||| Sbjct 640 TAGTCATGGTAGAGATGAATCT-ACTATGCTAAATGAGGATGCTTCAGCTGCTGAACAAA 698 Query 832 TGCTAGCCCTGCGTCATAACACTCTAGCTCATAATGGTGCCTGTGATAGTGCAGCAGCTA 891 |||||||||||||| |||||| | || | | ||| |||||||||||||||| | || Sbjct 699 TGCTAGCCCTGCGTGATAACAGTGTACCACGTAACAAAGCCTGTGATAGTGCAGTTGTTA 758 Query 892 AAGATCTATGTGAGATAGCTACATATTCCTCAAGGAGAAGAAATGAAAGGGTGCGGGCTC 951 |||| | | | ||||||| |||||||| ||||||| |||||||| | |||| || ||| Sbjct 759 AAGAACCACGCAAGATAGCAACATATTCTTCAAGGAAAAGAAATGGAGGGGTACGATCTC 818 Query 952 TAAAG-TATGCTCCACAGA-GTATA-ATATTACCGGTTGAGCACTCTAAAA-TCTCATCA 1007 |||| | ||| ||||||| | ||| || || | |||| ||| |||||||| | |||||| Sbjct 819 -AAAGGTGTGCACCACAGAAGAATACATGTT-C-GGTTCAGCGCTCTAAAAGT-TCATCA 874 Query 1008 AGGTTGGAATTGGATAGAG-TTCAAAGGTCCATGCTT-CAATGCAGTGATGGTGGTCCA- 1064 |||||| || |||| || ||||||| |||||| || ||| ||| |||||||| | | Sbjct 875 AGGTTGCAAACCGATA-AGCTTCAAAGCTCCATG-TTGCAAAACAGCGATGGTGGAC-AG 931 Query 1065 AGTGTCAAT-A-GTATAA-ATGGCAAAGCTAT-AAGAAGGAGAAAAAGAATCCGTA---C 1117 ||| | || | || || |||| | || || ||||||| ||||||| ||| | | | Sbjct 932 AGTATTGATGACGTGGAAGATGG-A--GC-ATTAAGAAGGGGAAAAAGGATCAGAAGATC 987 Query 1118 GTCAGGTCAATCTGAATCAGATGACGTGGTTTCATCAGATCTAAATCTGC-ACGG-ATCT 1175 |||||||| |||||||||||||| |||| |||||||| | ||||| | | | || | | Sbjct 988 ATCAGGTCATTCTGAATCAGATGATGTGGCTTCATCAGCTTTAAAT-TCCCATGGGAG-T 1045 Query 1176 GATGAGGACAACGCATCTGAAATTGCTACAGTTGAATCTAACAATAATAGTAGGAATGAA 1235 || || || || || ||||||||||| || ||||||||| | ||||||| |||||||||| Sbjct 1046 GACGAAGAAAATGCCTCTGAAATTGCGACGGTTGAATCTGATAATAATACTAGGAATGAA 1105 Query 1236 GGCAATGGTGTGGATTCTGGTTCCAAAGTTGAGTATTCTG-ATGCCGTTGGTG-AGGGTT 1293 ||||||||||| |||||||||||||||||||| | || || |||||| | || Sbjct 1106 GGCAATGGTGTAGATTCTGGTTCCAAAGTTGAACAAA-TGGATA---TTGGTGGACAATT 1161 Query 1294 G-T-GACGGAGGTCATGAGCTTAACAAAGGGCTTGATTTTCATATTAGCACCATGGTTAA 1351 | || |||| | ||||||| ||||| |||||| |||| || |||| | ||||||||| Sbjct 1162 TCTCGAAGGAGATTATGAGCTCAACAAGGGGCTTAATTTCCAAATTAATATCATGGTTAA 1221 Query 1352 GAGGAAGAAGAGGAAACCC-ACCAGAAAACGTGAAACCAGTGACATTATTGACCCTCCTG 1410 ||| |||||||| ||| || ||||||||||||| ||||||||| || |||| |||| | Sbjct 1222 GAGAAAGAAGAG-AAAGCCGACCAGAAAACGTGGAACCAGTGATGTTGTTGATCCTCAGG 1280 Query 1411 CTAAAGTTGAAGCAGAAG--GT-CTTG-GGCCCAATGCATGTGATAGCTGC-CAGAGATC 1465 |||||||||||||||||| || | || ||| | ||| |||||| || |||| ||| Sbjct 1281 CTAAAGTTGAAGCAGAAGCAGTTCCTGAGGCTGGA-GCACGTGATAA-TGTTCAGACATC 1338 Query 1466 TCAAAATTCTCATGAAAGGCTGAATGAGAGGCCCTGTGAAGAGAATGGTGATGAACATTT 1525 |||||||||||||||||| | | ||||||||| |||||||| ||||| ||||| || || Sbjct 1339 ACAAAATTCTCATGAAAGGTTTACTGAGAGGCCTTGTGAAGATAATGGGGATGAGCACTT 1398 Query 1526 GCCTCTGGT-AAAGCGAGCCAGAGTTC-GAATGAGTAGAGCTTTTTATGCTGATGAAAAG 1583 |||||||| ||| ||||||||||| | | ||||||||||| ||||||| | || | || Sbjct 1399 ACCTCTGGTGAAA-CGAGCCAGAGT-CAGGATGAGTAGAGCATTTTATGGTAATCATGAG 1456 Query 1584 GTCAAT-GCCTCTTCACAGGTGGAAGAGAGATCGTCGAAAGACACCCTACTAAGTGCAGC 1642 | |||| || ||||||||||| ||||| ||||| || || |||||||| | |||||| | Sbjct 1457 GCCAATAGC-TCTTCACAGGTTGAAGAAAGATCATCCAAGGACACCCTGGTCAGTGCAAC 1515 Query 1643 TTTGCAGACAAGCCCTTCTGTGAATCATGAAAATGGTATTGGTTCTGGTCATGATACTTC 1702 |||||||||||||||| | | || | | | | || |||||||||||| Sbjct 1516 AGCACAGACAAGCCCTTCTG--A-T-ATCA---T--T-T-----CTAGTCATGATACTTT 1560 Query 1703 TGCAGCCGAAGAATTTAACAGCTTT-GA-GTTGTCTGCTAAGCTTTCAGGTGTTATGGTT 1760 ||||| ||||||| || || ||| || || |||||||||||| ||||||| |||||| Sbjct 1561 TGCAGTTGAAGAATCTA-CATTTTTTGAAGT-GTCTGCTAAGCTCTCAGGTGACATGGTT 1618 Query 1761 GATGTAGTGCCTTCTCATATGGAGAAACCTTCA-GACAGAATGTCTCCTTCTGTGGCCTG 1819 |||||| || |||| | ||||||||||| || || |||||||||| |||| ||| || Sbjct 1619 AATGTAGCACCATCTCCTGTGGAGAAACCT-CATGATGGAATGTCTCCATCTGAGGCTTG 1677 Query 1820 TGTTCAGACTGTAGGAGATAGACAA-ACGGCTGTGAATTTCCATGAGAACGAGTTTACCA 1878 ||||||||||| |||| ||| || | | ||||| | | ||| ||| ||| || Sbjct 1678 CGTTCAGACTGTGGGAGGGAGAGAATATG-CTGTGGGGT-----G-GAATGAGCTTAGCA 1730 Query 1879 TGACACTAGATGATGAAGTAACTCGAGCACAATCTAACCAACTTAGCAGTTTG 1931 ||||| | ||||||||| | || || | |||||||| ||| ||||||||||| Sbjct 1731 AGACACCAAATGATGAAGCAGCTGGACCCCAATCTAATCAAGTTAGCAGTTTG 1783 Score = 933 bits (505), Expect = 0.0 Identities = 882/1055 (84%), Gaps = 61/1055 (6%) Strand=Plus/Plus Query 2638 CTCCTGCAAGGGGTACTCCAAATTGCAACTCAG--TA-TGCCGA-ATTTCTACCGCAGAA 2693 ||||||| ||||| |||||| || ||| ||||| || | || | |||||||| |||||| Sbjct 2499 CTCCTGCGAGGGGGACTCCACATAGCAGCTCAGTTTATTACC-ACATTTCTACTGCAGAA 2557 Query 2694 AGTGAAAATGCTATGCAGAACAACAGTTA-TTACAGCACC-AATGTT-CAGTATGGTGAG 2750 |||| ||||| ||||||||||||||| || || |||| || |||||| || | ||||||| Sbjct 2558 AGTGCAAATGATATGCAGAACAACAG-TAGTTGCAGC-CCAAATGTTCCA-TCTGGTGAG 2614 Query 2751 AACAAATCAT-TAAATGTTGACACTGTCAAAGAAGAA-AGCAAAGTTGAAACAGGCACAA 2808 || ||| || | || || || ||||||||||||| || ||| | |||||||| | Sbjct 2615 AAGAAA-AATGTTTGTGATGCCATTGTCAAAGAAGAAGAG-AAAATCGAAACAGGTGTAT 2672 Query 2809 CTCAGGTGA-AGAAAGTTGTTAGTTCTGATGTGCAATGCACT-GTTGAGTCTTTTGA-GA 2865 ||||| || ||||||||||||||| ||||||||||| |||| || || |||| ||| || Sbjct 2673 GTCAGG-GACAGAAAGTTGTTAGTTGTGATGTGCAATCCACTCGTGGA-TCTTATGAGGA 2730 Query 2866 CTGCACTTGA-CTCATTGGTGAGGACAAAGGAGACCATTGGCCGAGCAACTCGCTTGGCT 2924 ||||||| | |||||||||||||||||||||| ||||||||||||||||| |||||| Sbjct 2731 -TGCACTT-AGTTCATTGGTGAGGACAAAGGAGAGTATTGGCCGAGCAACTCGTTTGGCT 2788 Query 2925 ATGGACTTGGCGAAATTTGGCGTTTCAGCAAAGGCGATGGAAATTCTGGCCCACACTTTG 2984 ||||||||| ||||||||| || || |||||||| ||||| ||| |||| || |||||| Sbjct 2789 ATGGACTTGATGAAATTTGGTGTGTCTGCAAAGGCTATGGAGATTTTGGCTCATACTTTG 2848 Query 2985 GAAAGTGAGTCAAATTTACAA-AGGAGGGTGGATTTATTTTTCCTTGTGGATTCTATTGC 3043 |||||||||||||||||| || ||||||||||| |||||||||||||||||||| ||||| Sbjct 2849 GAAAGTGAGTCAAATTTA-AAGAGGAGGGTGGACTTATTTTTCCTTGTGGATTCCATTGC 2907 Query 3044 TCAGTGCTCCAAAGGTTTGAATGGTGATGCTGGTGGTGTTTATCTTTCATCCATTCAGGC 3103 ||||||||||||||| |||| |||||| ||||| |||||||||||||| ||||||| | Sbjct 2908 TCAGTGCTCCAAAGGGCTGAAAGGTGATACTGGTTGTGTTTATCTTTCAGCCATTCAAG- 2966 Query 3104 T-ATGCTACCTCGCCTATTAACTGCTGCTGTCCCAGCTGGAGCTACCACACAAGAAAACC 3162 | || ||||||||||||| | |||||||| || ||||||||||||||||||||||| | Sbjct 2967 TAATTTTACCTCGCCTATTGGCGGCTGCTGTACCTGCTGGAGCTACCACACAAGAAAATC 3026 Query 3163 GAAAACAGTGCTTGAAGGTTTTGAGGCTTTGGCTTGAAAGACGGATCCTTCCTGAATCTA 3222 | ||||||||||| |||||||||| |||||||||||||||||||||||| |||||||||| Sbjct 3027 GGAAACAGTGCTTAAAGGTTTTGAAGCTTTGGCTTGAAAGACGGATCCTGCCTGAATCTA 3086 Query 3223 TAGTTCGTCACCATATAAGAGAACTTGATTCGCTTAGTAAT-GTTCCTGCTTGCCTCTAT 3281 | ||||||||||||||||||||||||||||| | |||| || ||||||| |||||||||| Sbjct 3087 TTGTTCGTCACCATATAAGAGAACTTGATTCACATAGT-ATAGTTCCTGTTTGCCTCTAT 3145 Query 3282 TCTCGGCGATCCGCTCGAACAGAAAGGGCGCTGGATGACCCTGTTAGAGATATGGAGGGT 3341 |||||||| || ||||||||||||||| || ||||||| ||||| ||||||||||||| | Sbjct 3146 TCTCGGCGCTCAGCTCGAACAGAAAGGTCGTTGGATGATCCTGTGAGAGATATGGAGGAT 3205 Query 3342 ATACTGGTGGATGAATATGGAAGTAATTCAACTCTCCAGCTTCATGGATTCTGCATACCT 3401 || |||||||||||||||||||||||||||||||||||||| | |||||| ||||| || Sbjct 3206 ATGCTGGTGGATGAATATGGAAGTAATTCAACTCTCCAGCTCCCTGGATTTTGCATGCC- 3264 Query 3402 C-CAAT-ACTTAGGGATGA--AG--A----C-GA-----AGG-A---AGTGACTCGGATG 3441 | || | | ||| |||||| || | | || ||| | ||||||||||||| Sbjct 3265 CGCATTGA-TTAAGGATGAGGAGGGAGGGACTGACTCGGAGGGAGGCAGTGACTCGGATG 3323 Query 3442 G-GGGTGATTTTGAGTCTGTCACCCCTGAACACGAGTCAAGAAGCCTTGAAGAACATGTC 3500 | ||| ||||| |||||||||||||||||||| ||||| |||| |||||||||| ||||| Sbjct 3324 GAGGG-GATTTCGAGTCTGTCACCCCTGAACATGAGTCCAGAATCCTTGAAGAAAATGTC 3382 Query 3501 ACACCGTCCATTACCGAAAGGCATACCCGTATACTGGAAGATGTTGATGGTGAGCTTGAA 3560 | | |||| | ||||||||||| | |||| |||||||||||||||||||||||||| Sbjct 3383 TCGTCATCCACGGCTGAAAGGCATACACTTATATTGGAAGATGTTGATGGTGAGCTTGAA 3442 Query 3561 ATGGAAGACGTGGCTCCACCTTGGGAAGGTGGAAGCAGTGCTAGTGCGATCACAGATCAA 3620 |||||||| |||||||| ||||||||| ||||| | | || | | | ||| |||||| Sbjct 3443 ATGGAAGATGTGGCTCCGCCTTGGGAAACTGGAAACTGCGC-A---C-A-CACTGATCAA 3496 Query 3621 GCTGATAATAGAGAG-TCTGCAAATTGTCTGCTTG 3654 |||||||||| | || | | | ||||||| ||||| Sbjct 3497 GCTGATAATACAAAGGT-TACCAATTGTCAGCTTG 3530 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 167529436346 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5