BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G63110.1 Length=1465 Score E Sequences producing significant alignments: (Bits) Value Ahg939405 jgi|Araly1|939405|scaffold_503596.1 1600 0.0 > Ahg939405 jgi|Araly1|939405|scaffold_503596.1 Length=1051 Score = 1600 bits (866), Expect = 0.0 Identities = 986/1046 (94%), Gaps = 0/1046 (0%) Strand=Plus/Plus Query 74 ATATTGCAAAGCGTTTCATCATGATCATGAAGATATCTATGGCTATGTGCAAACAACCAT 133 ||| ||||||||| |||||||||||||||||| ||||||||||||||||||||| ||||| Sbjct 1 ATACTGCAAAGCGCTTCATCATGATCATGAAGGTATCTATGGCTATGTGCAAACTACCAT 60 Query 134 TGCCTCCTTCGCCGACTTTAGACTTCCCTCCAGCGAGATTTGGTCCCAATATGCTAACTC 193 |||||||||||||| | |||||||||||||| |||||||||||||||||||||||| ||| Sbjct 61 TGCCTCCTTCGCCGGCGTTAGACTTCCCTCCTGCGAGATTTGGTCCCAATATGCTATCTC 120 Query 194 TAAACCCATACGGTCCAAAGGACAAAGTTGTGGTCATCATGGGTGCTACCGGGACAGGCA 253 ||||||||| |||||||||||||||||||||||||| |||||||||||||| ||||||| Sbjct 121 TAAACCCATTTGGTCCAAAGGACAAAGTTGTGGTCATAATGGGTGCTACCGGAACAGGCA 180 Query 254 AGTCACGACTCTCCGTGGATATAGCCACACGTTTTCGGGCTGAGATCATAAACTCAGACA 313 ||||| |||||||||| ||||||||||||||||||||||||||||| ||||| || |||| Sbjct 181 AGTCAAGACTCTCCGTCGATATAGCCACACGTTTTCGGGCTGAGATAATAAATTCCGACA 240 Query 314 AGATACAAGTCCACCAAGGTCTAGACATTGTAACCAACAAGATCACGAGCGAGGAGAGCT 373 |||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 241 AGATCCAAGTCCACCAAGGTCTAGACATTGTCACCAACAAGATCACGAGCGAGGAGAGCT 300 Query 374 GCGGGGTACCGCACCATCTCCTCGGCGTCTTGCCGCCTGAAGCCGACTTAACCGCCGCGA 433 ||||||||||||| ||||||||||||||||||||||||||||| |||||||||||| ||| Sbjct 301 GCGGGGTACCGCATCATCTCCTCGGCGTCTTGCCGCCTGAAGCGGACTTAACCGCCCCGA 360 Query 434 ATTACTGTCACATGGCGAATCTCTCCATTGAATCCGTCCTAAACCGTGGAAAGCTTCCAA 493 ||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||| Sbjct 361 ATTACTGTCACATGGCGAATCTCTCCATTGAATCCATCCTAAACCGGGGAAAGCTTCCAA 420 Query 494 TCATCGTTGGAGGTTCCAACTCTTACGTGGAGGCTCTAGTGGATGACAAAGAAAACAAGT 553 |||||||||||||||| |||||||||||||||||||||||||||||| |||| ||||| | Sbjct 421 TCATCGTTGGAGGTTCTAACTCTTACGTGGAGGCTCTAGTGGATGACGAAGACAACAAAT 480 Query 554 TCAGGTCGAGATACGACTGTTGTTTTCTATGGGTGGACGTGGCACTTCCCGTTTTGCACG 613 ||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||| | Sbjct 481 TCAGGTCCAGATACGACTGTTGTTTTCTATGGGTCGACGTGGCACTTCCCGTTTTGCATG 540 Query 614 GGTTCGTGTCTGAGAGAGTTGACAAGATGGTGGAGAGTGGAATGGTTGAGGAAGTCAGAG 673 |||||||||||||||| |||||||||||||| || | |||||||||||||||||| |||| Sbjct 541 GGTTCGTGTCTGAGAGGGTTGACAAGATGGTAGAAAATGGAATGGTTGAGGAAGTTAGAG 600 Query 674 AATTTTTCGACTTTTCGAACTCTGATTACTCAAGAGGGATCAAGAAAGCAATCGGATTTC 733 | ||||| ||||||||| | |||||||||||||||||||||||||||||||||||| ||| Sbjct 601 ATTTTTTTGACTTTTCGGATTCTGATTACTCAAGAGGGATCAAGAAAGCAATCGGAGTTC 660 Query 734 CGGAGTTTGACAGGTTTTTCAGGAACGAGCAGTTCTTGAATGTGGAAGACAGAGAAGAAC 793 | |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 661 CAGAGTTTGACAGGTTTTTCAGGAACGAGCAGTTCTTGAATGTGGAAGACAGGGAAGAAC 720 Query 794 TGTTAAGTAAAGTGTTGGAAGAAATAAAGAGGAATACATTTGAGTTAGCTTGTAGGCAGA 853 |||||| ||||||| | ||||| ||||||||||| ||||||||||||||||||||||||| Sbjct 721 TGTTAATTAAAGTGGTCGAAGACATAAAGAGGAACACATTTGAGTTAGCTTGTAGGCAGA 780 Query 854 GAGAAAAGATCGAACGGTTGAGAAAAGTGAAGAAGTGGTCTATTCAGAGAGTGGATGCGA 913 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 781 GAGAAAAGATCGAACGGTTGAGAAAAGTGAAGAAGTGGTCCATTCAGAGAGTGGATGCGA 840 Query 914 CTCCAGTCTTTACAAAGCGAAGGTCCAAGATGGATGCTAACGTGGCCTGGGAGAGGCTCG 973 |||| |||||||||||||| |||||||||| ||||||| ||||||||||||||| ||||| Sbjct 841 CTCCGGTCTTTACAAAGCGCAGGTCCAAGACGGATGCTGACGTGGCCTGGGAGAAGCTCG 900 Query 974 TGGCTGGACCAAGCACAGATACTGTGTCGCGGTTTCTGCTGGACATTGCCAGCCGACGAC 1033 |||||||||||||||| |||||||||||||||||||||||||||||||||||||| || | Sbjct 901 TGGCTGGACCAAGCACCGATACTGTGTCGCGGTTTCTGCTGGACATTGCCAGCCGTCGGC 960 Query 1034 CGCTCGTGGAAGCTTCAACAGCGGTTGCGGCCGCCATGGAACGCGAGTTGTCGCGGTGTC 1093 ||||||||||||||||||| || |||||||| |||||||||||||||||||||||||||| Sbjct 961 CGCTCGTGGAAGCTTCAACCGCCGTTGCGGCGGCCATGGAACGCGAGTTGTCGCGGTGTC 1020 Query 1094 TAGTGGCGTGATCAGTTGTAACCACG 1119 |||||||||||||||||||||||||| Sbjct 1021 TAGTGGCGTGATCAGTTGTAACCACG 1046 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 54811862555 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5