BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G63180.1 Length=3238 Score E Sequences producing significant alignments: (Bits) Value Ahg486820 jgi|Araly1|486820|fgenesh2_kg.5__2812__AT3G63180.1 3408 0.0 > Ahg486820 jgi|Araly1|486820|fgenesh2_kg.5__2812__AT3G63180.1 Length=3241 Score = 3408 bits (1845), Expect = 0.0 Identities = 2337/2561 (91%), Gaps = 88/2561 (3%) Strand=Plus/Plus Query 747 AGAGATTTGCGGTTTATTCACTTGTAAAGCGAGATTCGACTCAGCCAACATTGATAAATC 806 ||||| |||||||||| ||||||||||||||||| |||||||||||||||||||||||| Sbjct 700 AGAGAATTGCGGTTTAATCACTTGTAAAGCGAGAATCGACTCAGCCAACATTGATAAATT 759 Query 807 GACCAACGGAGCTAAAACTTCGTTAGTAGTCG-CC----T--C-A-GATATTG-----TG 852 |||||||||| ||||||| ||||||||||||| || | | | || | | | Sbjct 760 GACCAACGGAACTAAAACATCGTTAGTAGTCGCCCATATTCACAAGGAGAAAGAACCAAG 819 Query 853 GAT-GA---GAAAG-AAC-CAA-GGGTATCAGAGGGTCCACAATTGGAAAACAACAAAG- 904 | | || | | | | || |||||||||| ||||||||||||||||||||||||| Sbjct 820 GCTAGATTCGGAGGTGTCAAAAGGGGTATCAGATGGTCCACAATTGGAAAACAACAAAGT 879 Query 905 --ATGAGAGTCATTGTA-T--TAGTAAGCTCGATATTCATCTCATGGTTCCTCCAACATT 959 ||||||||||| || | ||||||||||||||| |||||||||||||||||||| | Sbjct 880 TTTTGAGAGTCATTCTACTAGTAGTAAGCTCGATATGGATCTCATGGTTCCTCCAACAAT 939 Query 960 GCCTTCCTCTTCAGGGAGAGTTTCTCTTCTCCCACTCGTTTCTGATTATT-----GCAAG 1014 ||||||||| ||||||||||||||||||| ||||| ||||||||||||| ||||| Sbjct 940 GCCTTCCTCGCCAGGGAGAGTTTCTCTTCTTCCACTGGTTTCTGATTATTGCAAGGCAAG 999 Query 1015 -CGAGATAGTGCTCTAAAGAGCAAAGAGAA-GATTACTGTCAAGAATGAGATGAATCCAG 1072 ||||||||| ||||||||||||||||||| | |||| || | | | || ||||| Sbjct 1000 TCGAGATAGTTCTCTAAAGAGCAAAGAGAATG-TTAC--TC-----TCA-A-GACTCCAG 1049 Query 1073 AAGAAGTCAAACAAAAGAAGGTTGATAAACGTTACTGGCTGAATCTTGATATAGAGGGGC 1132 ||||||||||||| ||||||||||| |||||| | ||||||||||||||||||||||| | Sbjct 1050 AAGAAGTCAAACAGAAGAAGGTTGAAAAACGTGAATGGCTGAATCTTGATATAGAGGGTC 1109 Query 1133 CGAATCAAGAGACCGACAGAGACTCTAATTTAAGATTACAGAATTTGGATTGGAGCCAAC 1192 |||| |||||||| | |||||||||||||||||| ||||||||||||||||||||||||| Sbjct 1110 CGAACCAAGAGACTGGCAGAGACTCTAATTTAAGCTTACAGAATTTGGATTGGAGCCAAC 1169 Query 1193 CTCAGCAGGCTAAATCTGCTCCGCACAGTTCAGTCTTACCTTTGCCAGTAGCTGTAGCCA 1252 ||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||| || Sbjct 1170 CTCAGCAGGCTAAATCTGCTCAGCATAGTTCAGTCTTACCTTTGCCAGTAGCTGTAGGCA 1229 Query 1253 GCTGGCCTAGCGGGGTTCCTCCTCAGGGACATGTAGCCCTGATCCAGACCGGTAAACCTG 1312 ||| |||||||| ||||||||||| |||| ||||| |||||||||||||||||||||||| Sbjct 1230 GCTCGCCTAGCGTGGTTCCTCCTCGGGGATATGTACCCCTGATCCAGACCGGTAAACCTG 1289 Query 1313 TGGATGAAAGCAATGGATCTTCTAAATTAGTGCAGGGTGCTCCAATT-TCTGCCTCTCAG 1371 |||||| |||||||||||||||| || |||||||||||| | ||| |||||||||||| Sbjct 1290 TGGATGGGAGCAATGGATCTTCTACTTTGGTGCAGGGTGCT-CTATTCTCTGCCTCTCAG 1348 Query 1372 CCTAGGCCTAAAAGGTGTGCCACACACTTTTTCATAGCTCGGAACATTCAGCTACATCAG 1431 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 1349 CCTAGGCCTAAAAGGTGTGCCACACACTTTTTCATTGCTCGGAACATTCAGCTACATCAG 1408 Query 1432 CATTTCCTCAAAACAAACCATCTCCCTACACCAAACAAAGGTTCTGTTTATCTGAAAGGT 1491 |||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 1409 CATTTCGTCAAAACAAACCATCTCTCTACACCAAACAAAGGTTCTGTTTATCTGAAAGGT 1468 Query 1492 GGTGACTTGAGGCCAACCGCTGGAAACCCATCCTTGCATGGAAGCTCTCCTATTCTCAGT 1551 ||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||| Sbjct 1469 GGTGACTTGAGGCCAGCCGCTGGAAACCCATCCTTGCAAGGAAGCTCTCCTATTCTCAGT 1528 Query 1552 TTAAACTCCCAACCACACGTTAGAAACGGAGATAATATTTCTGCGCCTAATGTTAAAGCC 1611 ||||||||||| |||||| ||||| || |||||||||||||| || ||| | ||||||| Sbjct 1529 TTAAACTCCCAGGCACACGATAGAATCGTAGATAATATTTCTGTGCTTAAGGATAAAGCC 1588 Query 1612 TCTGAAAGTGGTCATTTTGCCTCAACCAGACAGAATAAACCTCAACCACCCCCTGCATCA 1671 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1589 TCTGAAAGTGGTCATTTTGCCTCAACCAGACAGAATAAACCTCAACCACCCCCTGCATCG 1648 Query 1672 ATTAGTGTAGTGCCTGCTCCAGCTTTTATCTACCCCGCAAACCACCATTTGCAACCAGTC 1731 |||||||||||||||||||| ||||| |||| ||||||||||||||| |||||||||||| Sbjct 1649 ATTAGTGTAGTGCCTGCTCCTGCTTTCATCTTCCCCGCAAACCACCAATTGCAACCAGTC 1708 Query 1732 ATGGTACCTTCTAAATCATCTCGCCCAACCAAGAGCCCCCATTTGGCTGTTGGTTTAGCA 1791 ||||||||||||||||| ||||||||||| |||||||| | | |||||||||||| |||| Sbjct 1709 ATGGTACCTTCTAAATCTTCTCGCCCAACAAAGAGCCCACGTGTGGCTGTTGGTTCAGCA 1768 Query 1792 TCTGCTAACTTCAGCCATCCAAGTTCATCAGCCAGCGAAGTTTCTTCTCCATACTTAACA 1851 |||| |||||||| |||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 1769 TCTGTTAACTTCACCCATCCAAGTTCATCAGCCAGCGAAGTTTCTTCTCCATACTTTACA 1828 Query 1852 GTTATTCCAAACAATGCATATTCCTTTCAACTGTCATCAACCATCAGAGGTGGGACTCCA 1911 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1829 GTTCTTCCAAACAATGCATATTCCTTTCAACTGTCATCAACCATCAGAGGTGGGACTCCA 1888 Query 1912 AGCCAGGCGGTGCCTTTCTACAATGGGTCTTTTTACTCGCCTCAGATGTTCCAACAACCT 1971 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| | Sbjct 1889 AGCCAGGCGGTGCCTTTCTACAATGGGTCTTTTTACTCGCCGCAGATGTTCCAACAACAT 1948 Query 1972 CCTCAGCCTCTGCAGAGACAGAGTCAAGCCCAGAGGGAGTCAAAGGCATCAAGCTGTTCC 2031 ||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 1949 CCTCAACCTCTGCAGAGACAGAGTCAAGCCCAAAGGGAGTCAAAGGCATCAAGCTGTTCC 2008 Query 2032 TCATC-TTCC-CA--C-A--G-----GCAACCGCAAGTTAGTGTGAATAGTCTTTCAAGC 2079 ||||| | || || | | | |||||||||||||||||||||||||||||||||| Sbjct 2009 TCATCATCCCACAGGCAACCGCAACCGCAACCGCAAGTTAGTGTGAATAGTCTTTCAAGC 2068 Query 2080 CAAGCTAATGTTCAGCAACACCGTCAAATGTCACAAAAGTTTGAGG-T-----AGCTGGA 2133 |||||||||||||| ||||||||||||||||||||||||| ||||| | ||||||| Sbjct 2069 CAAGCTAATGTTCAACAACACCGTCAAATGTCACAAAAGTCTGAGGCTAAAGCAGCTGGA 2128 Query 2134 GTTAACACTGATTCAAGGGGTAGCCACACTCAGAAAGGAGGCCCATTTGGCCAGATCATG 2193 | |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 2129 GATAACACTGATTCAAGGGGTAGCCACACTCAGAAAGGAGGCCCATTTAGCCAGATCATG 2188 Query 2194 GCAGCCCCTGTTCAGCCACAAAACTTTTCCATGTCGTTTGCGTCTATCGCCAGCAGTGCT 2253 |||| |||||||| |||||||||||||||||||||||||||||| |||||| ||||||| Sbjct 2189 ACAGCGCCTGTTCAACCACAAAACTTTTCCATGTCGTTTGCGTCTTTCGCCAACAGTGCT 2248 Query 2254 CCCCCTGCAACTCTGAATTTTTCCTCCAATGGCTAT--CA-CATCTCTACACCTCCTGGT 2310 ||||||||||||||||||| ||||||||||||||| || ||||||||||||||||||| Sbjct 2249 GCCCCTGCAACTCTGAATTTCTCCTCCAATGGCTATCACATCATCTCTACACCTCCTGGT 2308 Query 2311 GTTGCTCACCAGAAAAACCATCAATCAAGTGAGGCAAAGACTGGAGGTGGAAGCTGTTCA 2370 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2309 GTTGCTCACCAGAAAAACCATCAATCAAGTGAGGCAAAGACTGGAGGTGGAAGCTGTTCA 2368 Query 2371 AGCAATGCCGAAGACCCGAAAAAGAATCTTCAAGGGAAGCCTCAAGGGATGATGAATGGA 2430 ||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||| Sbjct 2369 AGCAATGCCGAAGACCCGAAAAAGAATCTTCCAGGGAAGCCTCCAGGGATGATGAATGGA 2428 Query 2431 CATACGCTGGTTTTTGACAATCCATCGAGAACCCTCAACTTTGTTTCTGGTACTTGGCCT 2490 || || |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2429 CAGACACTGGTTTTTGACAATCCATCGAGAACCCTCAACTTTGTTTCTGGTACTTGGCCT 2488 Query 2491 CCTCCTGCAGCAACAGCAATAAACGGAGACCCTTCAGTGTTTACGCAGCATCTCACGCAG 2550 ||||||||||||||||||||||| |||||||||||||||||||| |||||||| |||||| Sbjct 2489 CCTCCTGCAGCAACAGCAATAAATGGAGACCCTTCAGTGTTTACCCAGCATCTTACGCAG 2548 Query 2551 AGGCAGCAGCAATCTGGTCGGAGTAAAATGATGATGACTCATTCGCAGGCTGACTCTGTT 2610 || ||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 2549 AGACAGCAGCAATCTGGTCGGAGTAAAATGATGA---CTCATTCGCAGGCTGACTCTGTT 2605 Query 2611 TCTGCCACGTCATCCCAGTGGAAAAACCCTGCAACCTCATCATCACTCACGTC-GTGTAC 2669 |||||| |||||||||||||||||||||||||||||||||| ||||||||||| | |||| Sbjct 2606 TCTGCCCCGTCATCCCAGTGGAAAAACCCTGCAACCTCATCGTCACTCACGTCCG-GTAC 2664 Query 2670 TTCCTTAAACCTCAAGCAGTTCCAGTCGCAGCAGCAGATCAGAACACACGGACAGACACA 2729 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 2665 TTCCTTAAACCTCAAGCAGTTCCAGTCGCAGCAGCAGACCAGAACACACGGACAGACACA 2724 Query 2730 GATTTCTTTTGCAGCACCAACAAATCCGCAGCCTTCTCAGGGGAAACAGGGGAGATCTGG 2789 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 2725 GATTTCTTTTGCAGCACCATCAAATCCGCAGCCTTCTCAGGGGAAACAGGGGAGATCTGG 2784 Query 2790 TGGCTCTTCTCCTTCAGTCACTGGGTCTGCTTCACATGGCAAACCAGCGAACTCTAAGGT 2849 |||||||||| ||||||||||||||| |||||||||||||||| | || ||| ||||||| Sbjct 2785 TGGCTCTTCTTCTTCAGTCACTGGGTATGCTTCACATGGCAAAGCTGCAAACCCTAAGGT 2844 Query 2850 CAGCAATAGCAAAGCCTTGCTATTATCACCTGTTCCTTTGTCACAGGAACACACAGAGAA 2909 |||||||||||||||||||| ||||||||||||||||||||||| |||||| |||||||| Sbjct 2845 CAGCAATAGCAAAGCCTTGCCATTATCACCTGTTCCTTTGTCACGGGAACAGACAGAGAA 2904 Query 2910 TCCAGCTTCCGGGTCGACCCaaaaaaaCTCTCCCGTTTGTGGAAGGACCGTGCCACCGAT 2969 | |||| ||||||||| |||| |||| ||||||||||||||||||||||||||||||||| Sbjct 2905 TTCAGCGTCCGGGTCGTCCCAGAAAACCTCTCCCGTTTGTGGAAGGACCGTGCCACCGAT 2964 Query 2970 TATAACTTCGTGCCCTGGTCATCTGTCCGAGCTTAAGTACTAGTTCCA-TCGAAGCAGAC 3028 ||||||||||||||| ||||||||||| ||||| |||||||||||||| | ||||||||| Sbjct 2965 TATAACTTCGTGCCCGGGTCATCTGTCTGAGCTAAAGTACTAGTTCCAATTGAAGCAGAC 3024 Query 3029 GTATGAAGCCACCATTTTTGCAGTGTCTAGCTTCGAATTTAGGCTATTCCTAGATGAGGT 3088 || ||||||||||||||||||||||||| |||||||| |||||| ||||||||||||||| Sbjct 3025 GTTTGAAGCCACCATTTTTGCAGTGTCTTGCTTCGAAATTAGGCAATTCCTAGATGAGGT 3084 Query 3089 AATACCCTAATGGTTAGTGAAAGTAC-C-TCTTCTC-T-----AGGGAGTGAACGCTTT- 3139 |||||||||||||||||| ||||||| | ||||||| | | |||||||||||||| Sbjct 3085 AATACCCTAATGGTTAGTAAAAGTACACCTCTTCTCCTTCTCTACGGAGTGAACGCTTTC 3144 Query 3140 GGATCGGTATCTAAATTGTTTTATGTT--ATGGGGTCGATTGTTCTATCATTATGATTGG 3197 || || ||||||||||||||| ||||| ||||||||||||||||||||||||||||||| Sbjct 3145 GG-TCAGTATCTAAATTGTTTAATGTTTTATGGGGTCGATTGTTCTATCATTATGATTGG 3203 Query 3198 TCTGGTAGACTCTAGTGTAGATATTTAGACTAACAAAACCC 3238 ||| |||| |||||||||||||||||||||||||||||| Sbjct 3204 TCT---AGACACTAGTGTAGATATTTAGACTAACAAAACCC 3241 Score = 928 bits (502), Expect = 0.0 Identities = 617/668 (92%), Gaps = 25/668 (4%) Strand=Plus/Plus Query 65 AGCTTGCATTAATGGATAAACCCAGGGAAGCTCGAAGATCAACGACAAACATGGCTGCAT 124 |||||||||||||||||||| |||| |||||||||||||||||||||| ||||||||| | Sbjct 48 AGCTTGCATTAATGGATAAAACCAGAGAAGCTCGAAGATCAACGACAACCATGGCTGCTT 107 Query 125 CAAACGGAGTTACTAAACGGAGGCAGAGAATCTCAGAAAACAGTCGTGAGCAGATGCATC 184 |||| ||||| || |||||||| ||||| |||||||||| ||||||||||||||||||| Sbjct 108 CAAATGGAGTAACAAAACGGAGAAAGAGACTCTCAGAAAATAGTCGTGAGCAGATGCATC 167 Query 185 AGGAGGTGGCGACGGTGAGAGATCGACCGGGGAAGAAAGAGCGAGATCCGGAATCGTTCA 244 ||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 168 AGGAGGTGGCGACTGTGAGAGATCGACCAGGGAAGAAAGAGCGAGATCCGGAATCGTTCA 227 Query 245 ATCGGAGTAAGAGGAGAAGAAGCGAGAGGTTCGCGCCGAGGAACGAGAGAGATGTGGAAG 304 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 228 ATCGGAGTAAGAGGAGACGAAGCGAGAGGTTCGCGCCGAGGAACGAGAGAGATGTGGAAG 287 Query 305 AAGATAGCTCGGATGAGAGTCAAGGAGACGACGAT-T--A------TCATCAGAGGAAGA 355 ||||||||||||||||||||||||||||||||||| | | |||||||||||||| Sbjct 288 AAGATAGCTCGGATGAGAGTCAAGGAGACGACGATGTTCAGCAAAATCATCAGAGGAAGA 347 Query 356 GCTTCTCGTCGGGTCGAATCCCCAGGCATGCGGCGTCTTTGATGGTCGCCGATGAAATGA 415 ||||| |||||||||||||||||||||||||||||||||||| |||| |||||||||||| Sbjct 348 GCTTCCCGTCGGGTCGAATCCCCAGGCATGCGGCGTCTTTGAAGGTCACCGATGAAATGA 407 Query 416 TCGGCGTACCTGTCCCGAGAAAGGCTCGCTCAGCATGTTTAAAGAGGTCGCATGACTGCC 475 |||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 408 TCGGCGTAGCTGTCCCGAGAAAGGCTCGCTCAGCATGTATAAAGAGGTCGCATGACTGCC 467 Query 476 GGACTTCGTCGGGAAGCCATAGCTGCGAAGTCGTTTCACCGTCTTCTTCAACTCTTTCCG 535 ||||||||||||||||| | | | |||||||||||||||||||||||||||| Sbjct 468 GGACTTCGTCGGGAAGC----G-T------T-GTTTCACCGTCTTCTTCAACTCTTTCCG 515 Query 536 TCAAAG-AGA-GAAAGATTGTAAACGGATCCAAATCCCGGATACCCAAACCACCGAAATC 593 |||| | ||| ||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 516 TCAA-GCAGAAGAA-GATTGTAAACGGATCCAAATCCCGGATACCCAAACCACCGAAATC 573 Query 594 CTCCGGCACGGTTGAGGACGACTTGGAGATCGAAATAGCAGAGGTTCTCTCCGGATTGAA 653 ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 574 CTCCGGCACGGTTGAGGACGACTTGGAGATCGAAATAGCAGAGGTGCTCTCCGGATTGAA 633 Query 654 AAAGCAGCCTCATAGCTCAAAGAGAGGAGACGATTCGGAGAATTCTCAAAAATCATCGGA 713 ||||||||||| |||||| |||||||||||| ||||||||||||| ||||| ||||| || Sbjct 634 AAAGCAGCCTCGTAGCTCTAAGAGAGGAGACCATTCGGAGAATTCCCAAAAGTCATCCGA 693 Query 714 GGTTAAAG 721 |||||||| Sbjct 694 GGTTAAAG 701 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 122202866903 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5